PDB Short entry for 3BDP
HEADER    TRANSFERASE/DNA                         17-NOV-97   3BDP              
TITLE     DNA POLYMERASE I/DNA COMPLEX                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*CP*2DT)-3');            
COMPND   3 CHAIN: P;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: DNA (5'-D(*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3');              
COMPND   7 CHAIN: T;                                                            
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 MOL_ID: 3;                                                           
COMPND  10 MOLECULE: PROTEIN (DNA POLYMERASE I);                                
COMPND  11 CHAIN: A;                                                            
COMPND  12 FRAGMENT: RESIDUES 297-876;                                          
COMPND  13 SYNONYM: BF;                                                         
COMPND  14 EC: 2.7.7.7;                                                         
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 MOL_ID: 2;                                                           
SOURCE   4 SYNTHETIC: YES;                                                      
SOURCE   5 MOL_ID: 3;                                                           
SOURCE   6 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;                 
SOURCE   7 ORGANISM_TAXID: 1422;                                                
SOURCE   8 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   9 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    BACILLUS STEAROTHERMOPHILUS DNA POLYMERASE, BF THERMOPHILUS           
KEYWDS   2 POLYMERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE/DNA)                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.R.KIEFER,C.MAO,L.S.BEESE                                            
REVDAT   2   24-FEB-09 3BDP    1       VERSN                                    
REVDAT   1   13-JAN-99 3BDP    0                                                
JRNL        AUTH   J.R.KIEFER,C.MAO,J.C.BRAMAN,L.S.BEESE                        
JRNL        TITL   VISUALIZING DNA REPLICATION IN A CATALYTICALLY               
JRNL        TITL 2 ACTIVE BACILLUS DNA POLYMERASE CRYSTAL.                      
JRNL        REF    NATURE                        V. 391   304 1998              
JRNL        REFN                   ISSN 0028-0836                               
JRNL        PMID   9440698                                                      
JRNL        DOI    10.1038/34693                                                
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   J.R.KIEFER,C.MAO,C.J.HANSEN,S.L.BASEHORE,                    
REMARK   1  AUTH 2 H.H.HOGREFE,J.C.BRAMAN,L.S.BEESE                             
REMARK   1  TITL   CRYSTAL STRUCTURE OF A THERMOSTABLE BACILLUS DNA             
REMARK   1  TITL 2 POLYMERASE I LARGE FRAGMENT AT 2.1 A RESOLUTION              
REMARK   1  REF    STRUCTURE                     V.   5    95 1997              
REMARK   1  REFN                   ISSN 0969-2126                               
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.851                                         
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 88.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 63955                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.250                           
REMARK   3   FREE R VALUE                     : 0.294                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 3232                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.005                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.02                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 72.70                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 8257                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3890                       
REMARK   3   BIN FREE R VALUE                    : 0.3980                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.20                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 450                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.019                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4656                                    
REMARK   3   NUCLEIC ACID ATOMS       : 403                                     
REMARK   3   HETEROGEN ATOMS          : 20                                      
REMARK   3   SOLVENT ATOMS            : 434                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 21.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 20.50                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 5.64000                                              
REMARK   3    B22 (A**2) : -2.45000                                             
REMARK   3    B33 (A**2) : -3.19000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.25                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.05                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 20.00                           
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.29                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.012                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.50                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.40                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.01                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 0.880 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 1.470 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 1.570 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.500 ; 2.500                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : PARAM19.SOL                                    
REMARK   3  PARAMETER FILE  3  : DNA-RNA-MULTI-ENDO.PARAM                       
REMARK   3  PARAMETER FILE  4  : PARAM_SULFATE.TXT                              
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : TOPHCSDX.PRO                                   
REMARK   3  TOPOLOGY FILE  2   : TOPH19.SOL                                     
REMARK   3  TOPOLOGY FILE  3   : DNA-RNA-MULTI-ENDO.TOP                         
REMARK   3  TOPOLOGY FILE  4   : TOP_SULFATE.TXT                                
REMARK   3  TOPOLOGY FILE  5   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3BDP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 15-AUG-97                          
REMARK 200  TEMPERATURE           (KELVIN) : 90                                 
REMARK 200  PH                             : 5.8                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : NULL                               
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : NULL                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 63997                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 92.8                               
REMARK 200  DATA REDUNDANCY                : 5.100                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.06100                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.93                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 75.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.18700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: X-PLOR                                                
REMARK 200 STARTING MODEL: 2BDP                                                 
REMARK 200                                                                      
REMARK 200 REMARK: LTI/SIGMA(I)> FOR THE DATA SET : 26.4 LTI/SIGMA(I)> FOR      
REMARK 200  SHELL : 6.1                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 58.76                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.8                                   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       43.53150            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       53.12600            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       46.77350            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       53.12600            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       43.53150            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       46.77350            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A  2057     O    HOH A  2793              2.09            
REMARK 500   O    HOH A  2578     O    HOH A  2773              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A  2171     O    HOH A  2385     3555     2.14            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    LEU A 834   CA  -  CB  -  CG  ANGL. DEV. =  17.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A 298      152.82    -42.26                                   
REMARK 500    ASP A 402       94.98   -170.16                                   
REMARK 500    ALA A 421       39.71    -85.81                                   
REMARK 500    LYS A 434        1.63    -64.44                                   
REMARK 500    ALA A 436      147.32   -179.35                                   
REMARK 500    LEU A 477      -73.96   -113.03                                   
REMARK 500    LEU A 610      -52.03   -122.42                                   
REMARK 500    ASN A 625       34.21   -140.02                                   
REMARK 500    ILE A 628      -31.99   -152.36                                   
REMARK 500    VAL A 713      -77.79    -36.25                                   
REMARK 500    TYR A 714       62.01    -66.50                                   
REMARK 500    ILE A 716       74.14     45.37                                   
REMARK 500    HIS A 829      -55.15     66.98                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500     DT P  13         0.10    SIDE_CHAIN                              
REMARK 500     DG T  19         0.06    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A2708        DISTANCE =  5.81 ANGSTROMS                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 910                 
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 912                 
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 915                 
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 920                 
DBREF  3BDP A  297   876  UNP    P52026   DPO1_BACST     297    877             
DBREF  3BDP P    7    16  PDB    3BDP     3BDP             7     16             
DBREF  3BDP T   18    27  PDB    3BDP     3BDP            18     27             
SEQADV 3BDP ALA A  298  UNP  P52026    LYS   298 CONFLICT                       
SEQADV 3BDP ARG A  411  UNP  P52026    ALA   411 CONFLICT                       
SEQADV 3BDP GLU A  456  UNP  P52026    ALA   456 CONFLICT                       
SEQADV 3BDP LYS A  505  UNP  P52026    GLU   505 CONFLICT                       
SEQADV 3BDP GLY A  512  UNP  P52026    ARG   512 CONFLICT                       
SEQADV 3BDP THR A  550  UNP  P52026    SER   550 CONFLICT                       
SEQADV 3BDP     A       UNP  P52026    GLN   576 DELETION                       
SEQADV 3BDP HIS A  823  UNP  P52026    ARG   824 CONFLICT                       
SEQRES   1 P   10   DG  DC  DA  DT  DG  DA  DT  DG  DC 2DT                      
SEQRES   1 T   10   DA  DG  DC  DA  DT  DC  DA  DT  DG  DC                      
SEQRES   1 A  580  ALA ALA MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU          
SEQRES   2 A  580  GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL          
SEQRES   3 A  580  VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE          
SEQRES   4 A  580  ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO          
SEQRES   5 A  580  GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU          
SEQRES   6 A  580  GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS          
SEQRES   7 A  580  ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU          
SEQRES   8 A  580  CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU          
SEQRES   9 A  580  LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ARG ALA ALA          
SEQRES  10 A  580  ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU          
SEQRES  11 A  580  ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP          
SEQRES  12 A  580  GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA          
SEQRES  13 A  580  ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU          
SEQRES  14 A  580  ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU          
SEQRES  15 A  580  GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA          
SEQRES  16 A  580  GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY          
SEQRES  17 A  580  LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG          
SEQRES  18 A  580  ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER          
SEQRES  19 A  580  PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN          
SEQRES  20 A  580  LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR          
SEQRES  21 A  580  SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU          
SEQRES  22 A  580  ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS          
SEQRES  23 A  580  LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL          
SEQRES  24 A  580  ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN          
SEQRES  25 A  580  ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO          
SEQRES  26 A  580  ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG          
SEQRES  27 A  580  LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP          
SEQRES  28 A  580  LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG          
SEQRES  29 A  580  VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU          
SEQRES  30 A  580  ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA          
SEQRES  31 A  580  MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO          
SEQRES  32 A  580  ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE          
SEQRES  33 A  580  VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU          
SEQRES  34 A  580  ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG          
SEQRES  35 A  580  TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU          
SEQRES  36 A  580  ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR          
SEQRES  37 A  580  THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR          
SEQRES  38 A  580  SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET          
SEQRES  39 A  580  ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE          
SEQRES  40 A  580  ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS          
SEQRES  41 A  580  GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS          
SEQRES  42 A  580  ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU          
SEQRES  43 A  580  ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA          
SEQRES  44 A  580  VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR          
SEQRES  45 A  580  GLY SER THR TRP TYR ASP ALA LYS                              
MODRES 3BDP 2DT P   16   DT  3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE                 
HET    2DT  P  16      19                                                       
HET    SO4  A 910       5                                                       
HET    SO4  A 912       5                                                       
HET    SO4  A 915       5                                                       
HET    SO4  A 920       5                                                       
HETNAM     2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE                               
HETNAM     SO4 SULFATE ION                                                      
HETSYN     2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE                          
FORMUL   1  2DT    C10 H15 N2 O7 P                                              
FORMUL   4  SO4    4(O4 S 2-)                                                   
FORMUL   8  HOH   *434(H2 O)                                                    
HELIX    1   1 GLU A  309  LEU A  312  5                                   4    
HELIX    2   2 PRO A  348  ALA A  353  1                                   6    
HELIX    3   3 PRO A  355  GLY A  362  1                                   8    
HELIX    4   4 SER A  373  LYS A  383  1                                  11    
HELIX    5   5 LEU A  394  LEU A  401  1                                   8    
HELIX    6   6 PRO A  403  GLN A  405  5                                   3    
HELIX    7   7 VAL A  410  LYS A  417  1                                   8    
HELIX    8   8 ASP A  425  TYR A  429  1                                   5    
HELIX    9   9 GLY A  432  LYS A  434  5                                   3    
HELIX   10  10 GLU A  440  ARG A  467  1                                  28    
HELIX   11  11 ASP A  471  VAL A  475  1                                   5    
HELIX   12  12 GLU A  478  ALA A  491  1                                  14    
HELIX   13  13 THR A  497  ALA A  522  1                                  26    
HELIX   14  14 PRO A  531  PHE A  539  1                                   9    
HELIX   15  15 ALA A  558  TYR A  567  1                                  10    
HELIX   16  16 GLU A  569  TYR A  587  1                                  19    
HELIX   17  17 GLU A  589  VAL A  594  1                                   6    
HELIX   18  18 GLU A  631  ALA A  639  1                                   9    
HELIX   19  19 ILE A  657  ALA A  666  1                                  10    
HELIX   20  20 ASP A  669  ARG A  676  1                                   8    
HELIX   21  21 ILE A  681  ILE A  689  1                                   9    
HELIX   22  22 PRO A  699  VAL A  713  1                                  15    
HELIX   23  23 ASP A  718  ASN A  724  1                                   7    
HELIX   24  24 ARG A  729  SER A  742  1                                  14    
HELIX   25  25 PRO A  744  LYS A  760  1                                  17    
HELIX   26  26 PRO A  774  THR A  777  5                                   4    
HELIX   27  27 PHE A  781  GLU A  817  1                                  37    
HELIX   28  28 LYS A  838  GLN A  854  5                                  17    
SHEET    1   A 6 THR A 302  ALA A 304  0                                        
SHEET    2   A 6 GLY A 342  LEU A 346  1  N  PHE A 345   O  THR A 302           
SHEET    3   A 6 GLY A 334  ASN A 339 -1  N  ASN A 339   O  GLY A 342           
SHEET    4   A 6 LYS A 315  GLU A 321 -1  N  GLU A 321   O  GLY A 334           
SHEET    5   A 6 LYS A 367  MET A 370  1  N  LYS A 367   O  ALA A 316           
SHEET    6   A 6 VAL A 390  ASP A 393  1  N  SER A 391   O  LYS A 368           
SHEET    1   B 2 ILE A 605  ASN A 607  0                                        
SHEET    2   B 2 SER A 617  THR A 619 -1  N  THR A 619   O  ILE A 605           
SHEET    1   C 4 VAL A 864  GLY A 869  0                                        
SHEET    2   C 4 TRP A 647  TYR A 654 -1  N  ASP A 653   O  ASP A 865           
SHEET    3   C 4 GLU A 831  PRO A 837 -1  N  ALA A 836   O  LEU A 648           
SHEET    4   C 4 HIS A 823  GLN A 827 -1  N  LEU A 826   O  ILE A 833           
SHEET    1   D 2 TYR A 762  THR A 764  0                                        
SHEET    2   D 2 ARG A 770  TYR A 772 -1  N  ARG A 771   O  VAL A 763           
LINK         P   2DT P  16                 O3'  DC P  15     1555   1555  1.60  
CISPEP   1 GLU A  620    PRO A  621          0         0.07                     
SITE     1 AC1  4 ARG A 702  LYS A 706  SO4 A 915  HOH A2301                    
SITE     1 AC2  5 MET A 299  ALA A 300  ARG A 343  ARG A 677                    
SITE     2 AC2  5 HOH A2752                                                     
SITE     1 AC3  5 SER A 655  GLN A 656  SO4 A 910  HOH A2279                    
SITE     2 AC3  5 HOH A2796                                                     
SITE     1 AC4  3 ARG A 779  ARG A 819  HOH A2664                               
CRYST1   87.063   93.547  106.252  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.011486  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010690  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009412        0.00000