PDB Short entry for 3BE1 HEADER TRANSFERASE 15-NOV-07 3BE1 TITLE DUAL SPECIFIC BH1 FAB IN COMPLEX WITH THE EXTRACELLULAR DOMAIN OF TITLE 2 HER2/ERBB-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 23-646; COMPND 5 SYNONYM: P185ERBB2, C-ERBB-2, NEU PROTO-ONCOGENE, TYROSINE KINASE- COMPND 6 TYPE CELL SURFACE RECEPTOR HER2, MLN 19, CD340 ANTIGEN; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FAB FRAGMENT-HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: FAB FRAGMENT-LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHINESE HAMSTER OVARY; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAB COMPLEX, ATP-BINDING, GLYCOPROTEIN, KINASE, MEMBRANE, NUCLEOTIDE- KEYWDS 2 BINDING, PHOSPHORYLATION, RECEPTOR, TRANSFERASE, TRANSMEMBRANE, KEYWDS 3 TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BOSTROM,C.WIESMANN,B.A.APPLETON REVDAT 7 30-AUG-23 3BE1 1 HETSYN REVDAT 6 29-JUL-20 3BE1 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 25-OCT-17 3BE1 1 REMARK REVDAT 4 13-JUL-11 3BE1 1 VERSN REVDAT 3 31-MAR-09 3BE1 1 JRNL REVDAT 2 24-FEB-09 3BE1 1 VERSN REVDAT 1 18-NOV-08 3BE1 0 JRNL AUTH J.BOSTROM,S.F.YU,D.KAN,B.A.APPLETON,C.V.LEE,K.BILLECI,W.MAN, JRNL AUTH 2 F.PEALE,S.ROSS,C.WIESMANN,G.FUH JRNL TITL VARIANTS OF THE ANTIBODY HERCEPTIN THAT INTERACT WITH HER2 JRNL TITL 2 AND VEGF AT THE ANTIGEN BINDING SITE JRNL REF SCIENCE V. 323 1610 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19299620 JRNL DOI 10.1126/SCIENCE.1165480 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -4.19000 REMARK 3 B33 (A**2) : 4.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.776 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.407 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.304 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.265 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8024 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5412 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10937 ; 1.210 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13133 ; 0.846 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1005 ; 6.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;36.357 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1253 ;15.444 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;14.469 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1208 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8949 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1530 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5586 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3800 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4331 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 15 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5401 ; 2.728 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2052 ; 0.464 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8131 ; 4.227 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3291 ; 2.402 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2806 ; 3.741 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 114 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7944 -19.4991 86.4199 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: -0.0205 REMARK 3 T33: -0.1547 T12: 0.0147 REMARK 3 T13: -0.0039 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.1396 L22: 1.2177 REMARK 3 L33: 3.0757 L12: -0.4194 REMARK 3 L13: 2.1476 L23: 0.3570 REMARK 3 S TENSOR REMARK 3 S11: -0.2968 S12: 0.2112 S13: 0.1829 REMARK 3 S21: -0.2307 S22: 0.1503 S23: 0.1922 REMARK 3 S31: -0.3832 S32: 0.0143 S33: 0.1465 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 115 H 215 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9774 11.1172 96.6333 REMARK 3 T TENSOR REMARK 3 T11: 0.6142 T22: -0.4985 REMARK 3 T33: 0.5217 T12: 0.1456 REMARK 3 T13: -0.4472 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 5.3815 L22: 3.3279 REMARK 3 L33: 1.2477 L12: 4.2304 REMARK 3 L13: 1.4682 L23: 1.1094 REMARK 3 S TENSOR REMARK 3 S11: -0.6556 S12: -0.2077 S13: 0.9928 REMARK 3 S21: -0.3479 S22: -0.0627 S23: 0.7108 REMARK 3 S31: -0.9371 S32: 0.0292 S33: 0.7184 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 109 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8698 -21.1832 103.6787 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.0196 REMARK 3 T33: -0.1747 T12: -0.0009 REMARK 3 T13: 0.0723 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1178 L22: 2.8866 REMARK 3 L33: 3.2055 L12: 0.9418 REMARK 3 L13: 2.0106 L23: 1.8968 REMARK 3 S TENSOR REMARK 3 S11: 0.1894 S12: 0.0139 S13: -0.0446 REMARK 3 S21: 0.0792 S22: 0.0134 S23: 0.0244 REMARK 3 S31: -0.1064 S32: 0.1430 S33: -0.2028 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 110 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7138 12.3864 113.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.5511 T22: -0.1081 REMARK 3 T33: 0.5100 T12: 0.3969 REMARK 3 T13: -0.2773 T23: -0.5922 REMARK 3 L TENSOR REMARK 3 L11: 0.3428 L22: 3.3432 REMARK 3 L33: 1.0378 L12: -1.0705 REMARK 3 L13: 0.5964 L23: -1.8627 REMARK 3 S TENSOR REMARK 3 S11: -0.2965 S12: -0.1750 S13: 0.3310 REMARK 3 S21: 0.2064 S22: -0.0493 S23: 0.6930 REMARK 3 S31: -0.4743 S32: -0.1829 S33: 0.3458 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0268 -24.8261 39.5992 REMARK 3 T TENSOR REMARK 3 T11: -0.0267 T22: 0.0288 REMARK 3 T33: 0.0788 T12: -0.0207 REMARK 3 T13: -0.0119 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.0876 L22: 1.0365 REMARK 3 L33: 0.1507 L12: 0.0911 REMARK 3 L13: 0.3419 L23: 0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.2082 S13: -0.0122 REMARK 3 S21: -0.0185 S22: 0.0617 S23: -0.0109 REMARK 3 S31: -0.0251 S32: 0.0205 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 320 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9660 -7.3859 57.0914 REMARK 3 T TENSOR REMARK 3 T11: -0.0197 T22: -0.0150 REMARK 3 T33: 0.1375 T12: 0.0231 REMARK 3 T13: 0.0062 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3893 L22: 2.0757 REMARK 3 L33: 0.2710 L12: -0.1593 REMARK 3 L13: 0.2549 L23: 0.3531 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: 0.0055 S13: 0.0691 REMARK 3 S21: 0.2203 S22: 0.0844 S23: 0.0127 REMARK 3 S31: -0.0053 S32: -0.0222 S33: 0.0068 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 488 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0973 -38.7217 51.6103 REMARK 3 T TENSOR REMARK 3 T11: -0.0124 T22: -0.0328 REMARK 3 T33: 0.1244 T12: 0.0100 REMARK 3 T13: -0.0567 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.3097 L22: 1.1772 REMARK 3 L33: 0.5752 L12: 0.3309 REMARK 3 L13: -0.1491 L23: -0.1827 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0520 S13: -0.0633 REMARK 3 S21: 0.1222 S22: 0.0517 S23: -0.0810 REMARK 3 S31: 0.0235 S32: -0.0049 S33: -0.0262 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 607 REMARK 3 RESIDUE RANGE : A 1002 A 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3618 -45.0651 82.0399 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.0523 REMARK 3 T33: -0.0850 T12: 0.1355 REMARK 3 T13: -0.0948 T23: -0.1061 REMARK 3 L TENSOR REMARK 3 L11: 2.5972 L22: 0.7191 REMARK 3 L33: 2.4049 L12: 0.7931 REMARK 3 L13: 2.4935 L23: 0.8339 REMARK 3 S TENSOR REMARK 3 S11: 0.1291 S12: 0.2237 S13: -0.1703 REMARK 3 S21: 0.2505 S22: 0.2294 S23: 0.0561 REMARK 3 S31: 0.2136 S32: 0.2414 S33: -0.3585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BDY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF THE FAB/HER2 COMPLEX WERE REMARK 280 OBTAINED BY MIXING PROTEIN SOLUTION (11 MG/ML PROTEIN, 25 MM REMARK 280 TRIS-HCL PH 8 AND 150 MM SODIUM CHLORIDE) WITH CRYSTALLIZATION REMARK 280 BUFFER CONTAINING 25% W/V PEG2000, 0.1M MES PH 6.5. BEFORE DATA REMARK 280 COLLECTION THE CRYSTALS WERE FLASH FROZEN IN LIQUID NITROGEN REMARK 280 WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.16200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.08550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.52800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.08550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.52800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 101 REMARK 465 ASN A 102 REMARK 465 ASN A 103 REMARK 465 THR A 104 REMARK 465 THR A 105 REMARK 465 PRO A 106 REMARK 465 VAL A 107 REMARK 465 THR A 108 REMARK 465 GLY A 109 REMARK 465 ALA A 110 REMARK 465 ASP A 362 REMARK 465 PRO A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 GLY A 581 REMARK 465 VAL A 582 REMARK 465 LYS A 583 REMARK 465 PRO A 584 REMARK 465 ASP A 585 REMARK 465 LEU A 586 REMARK 465 SER A 587 REMARK 465 TYR A 588 REMARK 465 MET A 589 REMARK 465 PRO A 590 REMARK 465 CYS A 608 REMARK 465 THR A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 CYS A 612 REMARK 465 VAL A 613 REMARK 465 ASP A 614 REMARK 465 LEU A 615 REMARK 465 ASP A 616 REMARK 465 ASP A 617 REMARK 465 LYS A 618 REMARK 465 GLY A 619 REMARK 465 CYS A 620 REMARK 465 PRO A 621 REMARK 465 ALA A 622 REMARK 465 GLU A 623 REMARK 465 GLN A 624 REMARK 465 GLU H -2 REMARK 465 ILE H -1 REMARK 465 SER H 0 REMARK 465 SER H 129 REMARK 465 SER H 130 REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 LYS H 216 REMARK 465 SER H 217 REMARK 465 CYS H 218 REMARK 465 ASP H 219 REMARK 465 LYS H 220 REMARK 465 THR H 221 REMARK 465 HIS H 222 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 27D CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 125 O ALA A 219 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 78.23 -156.16 REMARK 500 LYS A 10 -123.99 49.30 REMARK 500 THR A 45 -50.61 -19.58 REMARK 500 LEU A 74 40.42 -106.15 REMARK 500 ASN A 89 -40.80 -155.87 REMARK 500 TYR A 141 -12.57 72.13 REMARK 500 LYS A 178 -84.17 -10.74 REMARK 500 ARG A 195 -47.02 -132.33 REMARK 500 CYS A 213 125.85 -6.13 REMARK 500 HIS A 215 154.92 -31.94 REMARK 500 HIS A 235 -76.36 -137.06 REMARK 500 VAL A 286 -8.19 -58.86 REMARK 500 VAL A 292 128.08 -179.66 REMARK 500 LEU A 295 153.91 -45.20 REMARK 500 GLU A 326 -122.12 38.67 REMARK 500 ALA A 343 115.48 -39.49 REMARK 500 PHE A 359 -93.75 -93.12 REMARK 500 ASP A 360 77.28 -41.37 REMARK 500 LEU A 400 42.43 -106.31 REMARK 500 ALA A 418 -51.09 -121.47 REMARK 500 ARG A 495 -2.17 61.16 REMARK 500 GLN A 511 -99.10 -101.34 REMARK 500 HIS A 567 -101.66 -126.03 REMARK 500 GLU A 598 34.28 -87.76 REMARK 500 SER H 25 137.36 -174.23 REMARK 500 ARG H 66 -46.28 -148.03 REMARK 500 ASP H 146 78.73 62.06 REMARK 500 PRO H 151 -159.67 -101.84 REMARK 500 SER H 155 111.52 -164.03 REMARK 500 ASN H 157 -161.96 72.88 REMARK 500 SER H 158 -78.72 -66.23 REMARK 500 SER H 190 -59.08 -164.36 REMARK 500 LEU H 191 -84.41 22.73 REMARK 500 THR H 193 -58.03 -142.56 REMARK 500 GLN H 194 -87.28 -85.85 REMARK 500 THR H 195 145.01 165.52 REMARK 500 ASN H 206 5.00 56.52 REMARK 500 PRO L 27C -78.51 -72.59 REMARK 500 ARG L 27D -113.38 62.57 REMARK 500 SER L 28 95.76 -164.41 REMARK 500 SER L 30 -68.84 -18.68 REMARK 500 SER L 77 76.23 -151.16 REMARK 500 ALA L 84 -179.94 178.77 REMARK 500 THR L 109 127.33 -39.17 REMARK 500 SER L 127 -60.65 -160.73 REMARK 500 ASN L 138 67.57 34.56 REMARK 500 ASP L 151 -80.04 60.87 REMARK 500 LYS L 169 -67.14 -108.66 REMARK 500 SER L 182 -161.20 -75.85 REMARK 500 ALA L 184 -71.20 -58.41 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 427 ILE A 428 144.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDY RELATED DB: PDB REMARK 900 RELATED ID: 2JPA RELATED DB: PDB REMARK 900 RELATED ID: 2JP9 RELATED DB: PDB DBREF 3BE1 A 1 624 UNP P04626 ERBB2_HUMAN 23 646 DBREF 3BE1 H -2 222 PDB 3BDY 3BDY -2 222 DBREF 3BE1 L 1 214 PDB 3BDY 3BDY 1 214 SEQRES 1 A 624 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 A 624 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 A 624 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 A 624 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 A 624 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 A 624 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 A 624 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 A 624 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 A 624 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 A 624 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 A 624 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 A 624 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 A 624 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 A 624 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 A 624 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 A 624 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 A 624 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 A 624 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 A 624 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 A 624 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 A 624 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 A 624 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 A 624 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 A 624 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 A 624 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 A 624 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 A 624 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 A 624 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 A 624 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 A 624 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 A 624 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 A 624 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 A 624 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 A 624 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 A 624 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 A 624 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 A 624 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 A 624 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 A 624 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 A 624 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 A 624 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 A 624 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 A 624 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 A 624 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 A 624 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 A 624 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 A 624 GLY ALA CYS GLN PRO CYS PRO ILE ASN CYS THR HIS SER SEQRES 48 A 624 CYS VAL ASP LEU ASP ASP LYS GLY CYS PRO ALA GLU GLN SEQRES 1 H 230 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 H 230 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 H 230 ALA SER GLY PHE ASN ILE LYS ASP THR TYR ILE HIS TRP SEQRES 4 H 230 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 H 230 ARG ILE TYR PRO THR ASN GLY TYR THR ARG TYR ALA ASP SEQRES 6 H 230 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 H 230 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 H 230 GLU ASP THR ALA VAL TYR TYR CYS SER ARG TRP GLY GLY SEQRES 9 H 230 ASP GLY PHE TYR ALA MET ASP TYR TRP GLY GLN GLY THR SEQRES 10 H 230 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 230 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 230 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 230 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 230 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 230 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 230 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 230 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 230 GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 L 218 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 218 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 218 GLN ASP ILE PRO ARG SER ILE SER GLY TYR VAL ALA TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR TRP GLY SER TYR LEU TYR SER GLY VAL PRO SER ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 L 218 ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR TYR SEQRES 8 L 218 CYS GLN GLN HIS TYR THR THR PRO PRO THR PHE GLY GLN SEQRES 9 L 218 GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS MODRES 3BE1 ASN A 237 ASN GLYCOSYLATION SITE MODRES 3BE1 ASN A 508 ASN GLYCOSYLATION SITE HET NAG A1001 14 HET NAG A1002 14 HET MES L 215 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 MES C6 H13 N O4 S HELIX 1 1 SER A 16 GLN A 29 1 14 HELIX 2 2 LEU A 49 ILE A 55 5 7 HELIX 3 3 LEU A 85 ASP A 88 5 4 HELIX 4 4 TYR A 141 ILE A 145 5 5 HELIX 5 5 LEU A 146 PHE A 151 1 6 HELIX 6 6 HIS A 152 GLN A 156 5 5 HELIX 7 7 MET A 325 ARG A 329 5 5 HELIX 8 8 THR A 335 ALA A 343 5 9 HELIX 9 9 LEU A 355 PHE A 359 5 5 HELIX 10 10 GLN A 371 LEU A 381 5 11 HELIX 11 11 LEU A 400 GLN A 404 5 5 HELIX 12 12 LEU A 414 GLY A 417 5 4 HELIX 13 13 PRO A 459 PHE A 464 1 6 HELIX 14 14 PRO A 478 GLY A 484 1 7 HELIX 15 15 CYS A 493 HIS A 497 5 5 HELIX 16 16 ASN H 28 THR H 32 5 5 HELIX 17 17 ARG H 83 THR H 87 5 5 HELIX 18 18 LYS H 203 ASN H 206 5 4 HELIX 19 19 ILE L 29 GLY L 31 5 3 HELIX 20 20 GLN L 79 PHE L 83 5 5 HELIX 21 21 SER L 121 LYS L 126 1 6 SHEET 1 A 5 VAL A 3 THR A 5 0 SHEET 2 A 5 VAL A 33 GLN A 35 1 O GLN A 35 N CYS A 4 SHEET 3 A 5 GLU A 57 VAL A 58 1 O GLU A 57 N VAL A 34 SHEET 4 A 5 ILE A 79 VAL A 80 1 O ILE A 79 N VAL A 58 SHEET 5 A 5 GLU A 125 ILE A 126 1 O GLU A 125 N VAL A 80 SHEET 1 B 5 LEU A 38 THR A 41 0 SHEET 2 B 5 VAL A 62 ALA A 65 1 O LEU A 63 N LEU A 40 SHEET 3 B 5 TYR A 90 LEU A 95 1 O ALA A 91 N VAL A 62 SHEET 4 B 5 GLY A 130 GLN A 134 1 O LEU A 132 N VAL A 94 SHEET 5 B 5 THR A 160 ILE A 162 1 O LEU A 161 N ILE A 133 SHEET 1 C 2 PHE A 236 HIS A 238 0 SHEET 2 C 2 ILE A 241 GLU A 243 -1 O ILE A 241 N HIS A 238 SHEET 1 D 2 VAL A 250 TYR A 252 0 SHEET 2 D 2 SER A 259 PRO A 261 -1 O MET A 260 N THR A 251 SHEET 1 E 2 TYR A 267 PHE A 269 0 SHEET 2 E 2 SER A 272 VAL A 274 -1 O VAL A 274 N TYR A 267 SHEET 1 F 4 CYS A 289 THR A 290 0 SHEET 2 F 4 LEU A 282 THR A 284 -1 N LEU A 282 O THR A 290 SHEET 3 F 4 GLN A 307 LYS A 311 1 O CYS A 309 N SER A 283 SHEET 4 F 4 ASN A 297 THR A 301 -1 N VAL A 300 O ARG A 308 SHEET 1 G 5 CYS A 320 TYR A 321 0 SHEET 2 G 5 LYS A 347 PHE A 349 1 O PHE A 349 N CYS A 320 SHEET 3 G 5 GLU A 383 ILE A 384 1 O GLU A 383 N ILE A 348 SHEET 4 G 5 VAL A 408 ILE A 409 1 O VAL A 408 N ILE A 384 SHEET 5 G 5 GLU A 438 LEU A 439 1 O GLU A 438 N ILE A 409 SHEET 1 H 5 LEU A 352 PHE A 354 0 SHEET 2 H 5 LEU A 388 ILE A 390 1 O TYR A 389 N PHE A 354 SHEET 3 H 5 TYR A 419 GLN A 424 1 O THR A 422 N ILE A 390 SHEET 4 H 5 LEU A 443 HIS A 447 1 O LEU A 445 N LEU A 421 SHEET 5 H 5 LEU A 471 THR A 474 1 O LEU A 472 N ALA A 444 SHEET 1 I 2 PHE A 512 ARG A 514 0 SHEET 2 I 2 GLU A 517 VAL A 519 -1 O GLU A 517 N ARG A 514 SHEET 1 J 2 GLU A 531 VAL A 533 0 SHEET 2 J 2 CYS A 538 PRO A 540 -1 O LEU A 539 N TYR A 532 SHEET 1 K 2 TYR A 568 ASP A 570 0 SHEET 2 K 2 PHE A 573 VAL A 575 -1 O PHE A 573 N ASP A 570 SHEET 1 L 2 LYS A 593 PRO A 595 0 SHEET 2 L 2 CYS A 601 PRO A 603 -1 O GLN A 602 N PHE A 594 SHEET 1 M 4 GLN H 3 SER H 7 0 SHEET 2 M 4 SER H 17 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 M 4 THR H 77 ASN H 82A-1 O ALA H 78 N CYS H 22 SHEET 4 M 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 N 6 LEU H 11 VAL H 12 0 SHEET 2 N 6 THR H 109 VAL H 113 1 O THR H 112 N VAL H 12 SHEET 3 N 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 109 SHEET 4 N 6 ILE H 34 GLN H 39 -1 N HIS H 35 O SER H 93 SHEET 5 N 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 N 6 THR H 57 TYR H 59 -1 O ARG H 58 N ARG H 50 SHEET 1 O 4 LEU H 11 VAL H 12 0 SHEET 2 O 4 THR H 109 VAL H 113 1 O THR H 112 N VAL H 12 SHEET 3 O 4 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 109 SHEET 4 O 4 TYR H 104 TRP H 105 -1 O TYR H 104 N ARG H 94 SHEET 1 P 4 SER H 122 PHE H 124 0 SHEET 2 P 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 124 SHEET 3 P 4 SER H 182 PRO H 187 -1 O VAL H 186 N ALA H 138 SHEET 4 P 4 VAL H 165 THR H 167 -1 N HIS H 166 O VAL H 183 SHEET 1 Q 3 SER H 122 PHE H 124 0 SHEET 2 Q 3 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 124 SHEET 3 Q 3 TYR H 178 SER H 179 -1 O TYR H 178 N TYR H 147 SHEET 1 R 3 SER H 155 TRP H 156 0 SHEET 2 R 3 CYS H 198 HIS H 202 -1 O ASN H 199 N SER H 155 SHEET 3 R 3 THR H 207 VAL H 209 -1 O VAL H 209 N VAL H 200 SHEET 1 S 4 GLN L 3 SER L 7 0 SHEET 2 S 4 VAL L 19 SER L 26 -1 O THR L 22 N SER L 7 SHEET 3 S 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 S 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 T 6 SER L 10 ALA L 13 0 SHEET 2 T 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 T 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 T 6 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 T 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 T 6 TYR L 53 LEU L 54 -1 O TYR L 53 N TYR L 49 SHEET 1 U 4 SER L 10 ALA L 13 0 SHEET 2 U 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 U 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 U 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 V 4 PHE L 116 PHE L 118 0 SHEET 2 V 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 V 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 V 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 W 4 ALA L 153 LEU L 154 0 SHEET 2 W 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 W 4 TYR L 192 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 W 4 VAL L 205 THR L 206 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 4 CYS A 31 1555 1555 2.04 SSBOND 2 CYS A 140 CYS A 170 1555 1555 2.05 SSBOND 3 CYS A 173 CYS A 182 1555 1555 2.03 SSBOND 4 CYS A 177 CYS A 190 1555 1555 2.04 SSBOND 5 CYS A 198 CYS A 205 1555 1555 2.04 SSBOND 6 CYS A 202 CYS A 213 1555 1555 2.03 SSBOND 7 CYS A 214 CYS A 222 1555 1555 2.05 SSBOND 8 CYS A 218 CYS A 230 1555 1555 2.03 SSBOND 9 CYS A 233 CYS A 242 1555 1555 2.03 SSBOND 10 CYS A 246 CYS A 273 1555 1555 2.05 SSBOND 11 CYS A 277 CYS A 289 1555 1555 2.03 SSBOND 12 CYS A 293 CYS A 309 1555 1555 2.05 SSBOND 13 CYS A 312 CYS A 316 1555 1555 2.03 SSBOND 14 CYS A 320 CYS A 345 1555 1555 2.03 SSBOND 15 CYS A 453 CYS A 482 1555 1555 2.02 SSBOND 16 CYS A 489 CYS A 498 1555 1555 2.04 SSBOND 17 CYS A 493 CYS A 506 1555 1555 2.04 SSBOND 18 CYS A 509 CYS A 518 1555 1555 2.04 SSBOND 19 CYS A 522 CYS A 538 1555 1555 2.02 SSBOND 20 CYS A 541 CYS A 554 1555 1555 2.04 SSBOND 21 CYS A 545 CYS A 562 1555 1555 2.03 SSBOND 22 CYS A 565 CYS A 574 1555 1555 2.03 SSBOND 23 CYS A 578 CYS A 601 1555 1555 2.79 SSBOND 24 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 25 CYS H 142 CYS H 198 1555 1555 2.04 SSBOND 26 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 27 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN A 237 C1 NAG A1001 1555 1555 2.00 LINK ND2 ASN A 508 C1 NAG A1002 1555 1555 2.00 CISPEP 1 SER A 111 PRO A 112 0 -15.48 CISPEP 2 PRO A 571 PRO A 572 0 9.52 CISPEP 3 PHE H 148 PRO H 149 0 -9.13 CISPEP 4 GLU H 150 PRO H 151 0 -3.20 CISPEP 5 SER L 7 PRO L 8 0 -1.71 CISPEP 6 THR L 94 PRO L 95 0 5.10 CISPEP 7 TYR L 140 PRO L 141 0 1.06 CRYST1 62.324 115.056 208.171 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004804 0.00000