PDB Short entry for 3BFA HEADER PHEROMONE BINDING PROTEIN 21-NOV-07 3BFA TITLE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM APIS MELLIFERA TITLE 2 IN COMPLEX WITH THE QUEEN MANDIBULAR PHEROMONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN ASP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PHIL-D2 KEYWDS HONEYBEE, APIS MELLIFERA, PHEROMONE BINDING PROTEIN, SIGNAL KEYWDS 2 TRANSDUCTION, QUEEN MANDIBULAR PHEROMONE, PHEROMONE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 4 13-JUL-11 3BFA 1 VERSN REVDAT 3 24-FEB-09 3BFA 1 VERSN REVDAT 2 24-JUN-08 3BFA 1 JRNL REVDAT 1 10-JUN-08 3BFA 0 JRNL AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, JRNL AUTH 2 M.TEGONI,C.CAMBILLAU JRNL TITL STRUCTURAL BASIS OF THE HONEY BEE PBP PHEROMONE AND JRNL TITL 2 PH-INDUCED CONFORMATIONAL CHANGE JRNL REF J.MOL.BIOL. V. 380 158 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18508083 JRNL DOI 10.1016/J.JMB.2008.04.048 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 947 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 620 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1286 ; 1.278 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1527 ; 0.915 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 116 ; 5.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;37.645 ;27.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 159 ;14.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;10.360 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 144 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1051 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 160 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 252 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 608 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 482 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 456 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 760 ; 0.633 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 233 ; 0.134 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 953 ; 0.787 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 408 ; 1.385 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 333 ; 1.905 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0054 12.2469 -5.7937 REMARK 3 T TENSOR REMARK 3 T11: -0.2096 T22: -0.2055 REMARK 3 T33: -0.0975 T12: -0.0446 REMARK 3 T13: 0.0425 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 3.2208 L22: 3.4359 REMARK 3 L33: 7.4023 L12: -0.2396 REMARK 3 L13: 2.2008 L23: -1.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.0629 S13: 0.6438 REMARK 3 S21: -0.1663 S22: -0.1695 S23: -0.4876 REMARK 3 S31: -0.3582 S32: 0.7431 S33: 0.2063 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5431 15.3671 7.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0029 REMARK 3 T33: -0.0447 T12: -0.2020 REMARK 3 T13: -0.0263 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 6.3824 L22: 5.5479 REMARK 3 L33: 8.9736 L12: -0.0824 REMARK 3 L13: 3.2925 L23: 1.8216 REMARK 3 S TENSOR REMARK 3 S11: -0.2150 S12: -0.4330 S13: 0.9754 REMARK 3 S21: 0.2495 S22: 0.0058 S23: -0.5140 REMARK 3 S31: -1.0964 S32: 0.9522 S33: 0.2092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB045447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : TIROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 57.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : 0.51800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 1R5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULPHATE, 0.1M SODIUM REMARK 280 CITRATE, PH5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.17250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.17250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.73050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.50950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.73050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.50950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.17250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.73050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.50950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.17250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.73050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.50950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 127 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 125 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 195 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 76 CG ASP A 76 OD1 0.154 REMARK 500 ASP A 76 CG ASP A 76 OD2 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 -160.61 -105.61 REMARK 500 VAL A 115 59.13 -113.78 REMARK 500 PHE A 117 146.84 179.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 181 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 193 DISTANCE = 5.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9OD A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R5R RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH N-BUTYL BENZENESULFONAMIDE REMARK 900 RELATED ID: 3BFB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC REMARK 900 ACID REMARK 900 RELATED ID: 3BFH RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH HEXADECANOIC ACID REMARK 900 RELATED ID: 2H8V RELATED DB: PDB REMARK 900 UNCOMPLEXED FORM OF THE SAME PROTEIN DBREF 3BFA A 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 SEQRES 1 A 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 A 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 A 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 A 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 A 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 A 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 A 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 A 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 A 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 A 119 VAL ILE HET 9OD A 120 13 HET GOL A 121 6 HETNAM 9OD (2Z)-9-OXODEC-2-ENOIC ACID HETNAM GOL GLYCEROL HETSYN 9OD 9-KETO-2(E)-DECENOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 9OD C10 H16 O3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *75(H2 O) HELIX 1 1 PRO A 7 VAL A 13 1 7 HELIX 2 2 VAL A 13 GLY A 25 1 13 HELIX 3 3 THR A 27 LYS A 36 1 10 HELIX 4 4 GLU A 42 PHE A 56 1 15 HELIX 5 5 ASP A 66 LEU A 74 1 9 HELIX 6 6 LEU A 78 LEU A 90 1 13 HELIX 7 7 ASP A 96 ALA A 112 1 17 SSBOND 1 CYS A 20 CYS A 51 1555 1555 2.02 SSBOND 2 CYS A 47 CYS A 98 1555 1555 2.08 SSBOND 3 CYS A 89 CYS A 107 1555 1555 2.05 CISPEP 1 LEU A 90 PRO A 91 0 1.85 SITE 1 AC1 6 LEU A 12 LEU A 52 PHE A 56 LEU A 73 SITE 2 AC1 6 ILE A 119 HOH A 154 SITE 1 AC2 2 MET A 70 PHE A 117 CRYST1 77.461 85.019 48.345 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020685 0.00000