PDB Short entry for 3BIN HEADER CELL ADHESION 30-NOV-07 3BIN TITLE STRUCTURE OF THE DAL-1 AND TSLC1 (372-383) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAND 4.1-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FERM DOMAIN; COMPND 5 SYNONYM: 4.1B, DIFFERENTIALLY EXPRESSED IN ADENOCARCINOMA OF THE LUNG COMPND 6 PROTEIN 1, DAL-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELL ADHESION MOLECULE 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: PEPTIDE FROM CYTOPLASMIC DOMAIN, UNP RESIDUES 400-411; COMPND 12 SYNONYM: IMMUNOGLOBULIN SUPERFAMILY MEMBER 4, NECTIN-LIKE PROTEIN 2, COMPND 13 NECL-2, TUMOR SUPPRESSOR IN LUNG CANCER 1, TSLC-1, SYNAPTIC CELL COMPND 14 ADHESION MOLECULE, SPERMATOGENIC IMMUNOGLOBULIN SUPERFAMILY, SGIGSF; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPB41L3, DAL1, KIAA0987; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE SYNTHETIC KEYWDS FERM DOMAIN, DAL-1, TSLC1, ACTIN-BINDING, CYTOSKELETON, KEYWDS 2 PHOSPHOPROTEIN, STRUCTURAL PROTEIN, ANTI-ONCOGENE, APOPTOSIS, CELL KEYWDS 3 ADHESION, CELL CYCLE, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 4 GLYCOPROTEIN, IMMUNE RESPONSE, IMMUNOGLOBULIN DOMAIN, MEMBRANE, KEYWDS 5 SPERMATOGENESIS, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR R.D.BUSAM,C.H.ARROWSMITH,R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN, AUTHOR 2 A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON,A.KALLAS, AUTHOR 3 T.KARLBERG,T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON,P.NORDLUND, AUTHOR 4 T.NYMAN,J.SAGEMARK,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES,S.VAN DEN AUTHOR 5 BERG,J.WEIGELT,M.WELIN,H.BERGLUND,C.PERSSON,B.M.HALLBERG REVDAT 6 13-MAR-24 3BIN 1 SEQADV REVDAT 5 13-JUL-11 3BIN 1 VERSN REVDAT 4 16-FEB-11 3BIN 1 JRNL REVDAT 3 12-JAN-11 3BIN 1 JRNL REVDAT 2 24-FEB-09 3BIN 1 VERSN REVDAT 1 15-JAN-08 3BIN 0 JRNL AUTH R.D.BUSAM,A.-G.THORSELL,A.FLORES,M.HAMMARSTROM,C.PERSSON, JRNL AUTH 2 B.OBRINK,B.M.HALLBERG JRNL TITL STRUCTURAL BASIS OF TUMOR SUPPRESSOR IN LUNG CANCER 1 JRNL TITL 2 (TSLC1) BINDING TO DIFFERENTIALLY EXPRESSED IN JRNL TITL 3 ADENOCARCINOMA OF THE LUNG (DAL-1/4.1B) JRNL REF J.BIOL.CHEM. V. 286 4511 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21131357 JRNL DOI 10.1074/JBC.M110.174011 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2497 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1759 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3375 ; 1.814 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4251 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 7.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;33.799 ;23.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;17.066 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2794 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 487 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1774 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1141 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1318 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 131 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1904 ; 1.007 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 593 ; 0.213 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2383 ; 1.252 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 2.255 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 992 ; 3.070 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 62.7700 48.6540 -7.7390 REMARK 3 T TENSOR REMARK 3 T11: -0.2122 T22: -0.1705 REMARK 3 T33: -0.2814 T12: 0.0479 REMARK 3 T13: 0.0199 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 6.1504 L22: 4.3193 REMARK 3 L33: 2.9907 L12: 2.4454 REMARK 3 L13: 3.1640 L23: 1.7069 REMARK 3 S TENSOR REMARK 3 S11: -0.1839 S12: 0.1432 S13: 0.2839 REMARK 3 S21: -0.1656 S22: -0.0154 S23: -0.1350 REMARK 3 S31: -0.1716 S32: 0.2538 S33: 0.1993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 55.3110 50.0310 -2.6420 REMARK 3 T TENSOR REMARK 3 T11: -0.2067 T22: -0.1614 REMARK 3 T33: -0.2266 T12: 0.0805 REMARK 3 T13: 0.0073 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 6.7714 L22: 2.5692 REMARK 3 L33: 2.1302 L12: 1.2360 REMARK 3 L13: 2.0053 L23: 0.7313 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: -0.5712 S13: 0.3151 REMARK 3 S21: 0.0877 S22: -0.1022 S23: 0.1852 REMARK 3 S31: -0.1573 S32: -0.2356 S33: 0.1712 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1480 36.9450 2.3950 REMARK 3 T TENSOR REMARK 3 T11: -0.0645 T22: 0.2437 REMARK 3 T33: 0.0070 T12: -0.0002 REMARK 3 T13: 0.0993 T23: 0.1291 REMARK 3 L TENSOR REMARK 3 L11: 7.2393 L22: 8.5675 REMARK 3 L33: 2.2160 L12: 3.3641 REMARK 3 L13: 2.9981 L23: 4.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.2691 S12: -1.4547 S13: -0.2520 REMARK 3 S21: 0.4688 S22: -0.2223 S23: 0.6316 REMARK 3 S31: 0.1356 S32: -0.3481 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3260 20.0760 -6.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.5708 T22: 0.0609 REMARK 3 T33: 0.6162 T12: -0.0054 REMARK 3 T13: -0.0010 T23: 0.1123 REMARK 3 L TENSOR REMARK 3 L11: 2.2946 L22: 5.5112 REMARK 3 L33: 18.3171 L12: -1.1278 REMARK 3 L13: 6.0290 L23: 0.5402 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.4499 S13: -1.8538 REMARK 3 S21: 0.4226 S22: 0.0612 S23: 0.7417 REMARK 3 S31: 4.0298 S32: -0.1130 S33: -0.0533 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6290 26.6170 5.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.4660 T22: 0.4451 REMARK 3 T33: 0.3621 T12: -0.0362 REMARK 3 T13: -0.1234 T23: 0.3585 REMARK 3 L TENSOR REMARK 3 L11: 3.2435 L22: 32.4371 REMARK 3 L33: 18.2863 L12: 0.1356 REMARK 3 L13: -4.2165 L23: 18.3898 REMARK 3 S TENSOR REMARK 3 S11: 0.7723 S12: -0.7452 S13: -1.1024 REMARK 3 S21: 2.2095 S22: -0.6511 S23: -0.5291 REMARK 3 S31: 2.3784 S32: -0.7279 S33: -0.1212 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0600 29.2630 -3.8900 REMARK 3 T TENSOR REMARK 3 T11: -0.0963 T22: 0.0764 REMARK 3 T33: 0.2596 T12: -0.0481 REMARK 3 T13: 0.0609 T23: 0.1233 REMARK 3 L TENSOR REMARK 3 L11: 4.9716 L22: 9.4596 REMARK 3 L33: 9.3403 L12: -0.7626 REMARK 3 L13: 0.0805 L23: -1.8433 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: -0.6913 S13: -0.9962 REMARK 3 S21: 0.5204 S22: -0.1871 S23: 1.0357 REMARK 3 S31: 0.8467 S32: -0.2005 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2610 54.5150 7.0460 REMARK 3 T TENSOR REMARK 3 T11: -0.1217 T22: 0.4490 REMARK 3 T33: 0.0681 T12: 0.0798 REMARK 3 T13: 0.1591 T23: -0.1882 REMARK 3 L TENSOR REMARK 3 L11: 0.8995 L22: 10.9747 REMARK 3 L33: 1.8348 L12: 2.0821 REMARK 3 L13: 1.0194 L23: 4.4049 REMARK 3 S TENSOR REMARK 3 S11: -0.4043 S12: -0.5825 S13: -0.0454 REMARK 3 S21: 0.6755 S22: -0.1176 S23: 0.7939 REMARK 3 S31: 0.2590 S32: -0.8979 S33: 0.5220 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5810 65.1970 8.0730 REMARK 3 T TENSOR REMARK 3 T11: -0.0661 T22: 0.0916 REMARK 3 T33: 0.0148 T12: 0.1552 REMARK 3 T13: 0.0954 T23: -0.1848 REMARK 3 L TENSOR REMARK 3 L11: 11.6363 L22: 12.5414 REMARK 3 L33: 6.1828 L12: -1.2438 REMARK 3 L13: 0.6817 L23: -0.4860 REMARK 3 S TENSOR REMARK 3 S11: -0.4920 S12: -0.4300 S13: 0.0714 REMARK 3 S21: 0.1474 S22: 0.6560 S23: 0.5768 REMARK 3 S31: 0.4542 S32: -0.4339 S33: -0.1640 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7210 72.4620 9.6520 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: -0.0070 REMARK 3 T33: 0.0540 T12: 0.0468 REMARK 3 T13: 0.0652 T23: -0.1196 REMARK 3 L TENSOR REMARK 3 L11: 14.6996 L22: 5.0205 REMARK 3 L33: 0.8562 L12: -7.1970 REMARK 3 L13: 0.7802 L23: -0.7005 REMARK 3 S TENSOR REMARK 3 S11: -0.1992 S12: -0.3001 S13: 1.1050 REMARK 3 S21: 0.2661 S22: 0.4614 S23: -0.4606 REMARK 3 S31: -0.1491 S32: 0.3051 S33: -0.2622 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2850 63.2090 0.0170 REMARK 3 T TENSOR REMARK 3 T11: -0.0627 T22: -0.1054 REMARK 3 T33: -0.0373 T12: 0.1474 REMARK 3 T13: 0.0567 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 14.5454 L22: 10.2385 REMARK 3 L33: 27.0294 L12: 1.8891 REMARK 3 L13: 12.7995 L23: 7.7048 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: 0.4572 S13: 0.5908 REMARK 3 S21: -0.7427 S22: -0.0925 S23: -0.0018 REMARK 3 S31: -0.5720 S32: 0.7320 S33: 0.2244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03992 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.650 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.75 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ETOH, 0.1M TRIS PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.84000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.26000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 325 REMARK 465 ARG A 326 REMARK 465 ALA B 1 REMARK 465 ARG B 2 REMARK 465 HIS B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 242 -14.00 -49.67 REMARK 500 ASP A 248 3.32 -151.90 REMARK 500 ILE A 329 -87.32 -108.23 REMARK 500 ARG A 344 -126.59 57.20 REMARK 500 LEU A 389 61.56 -116.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HE7 RELATED DB: PDB REMARK 900 FERM DOMAIN OF EPB41L3 (DAL-1) DBREF 3BIN A 109 390 UNP Q9Y2J2 E41L3_HUMAN 109 390 DBREF 3BIN B 1 12 UNP Q9BY67 CADM1_HUMAN 400 411 SEQADV 3BIN ALA A 108 UNP Q9Y2J2 EXPRESSION TAG SEQRES 1 A 283 ALA SER MET GLN CYS LYS VAL ILE LEU LEU ASP GLY SER SEQRES 2 A 283 GLU TYR THR CYS ASP VAL GLU LYS ARG SER ARG GLY GLN SEQRES 3 A 283 VAL LEU PHE ASP LYS VAL CYS GLU HIS LEU ASN LEU LEU SEQRES 4 A 283 GLU LYS ASP TYR PHE GLY LEU THR TYR ARG ASP ALA GLU SEQRES 5 A 283 ASN GLN LYS ASN TRP LEU ASP PRO ALA LYS GLU ILE LYS SEQRES 6 A 283 LYS GLN VAL ARG SER GLY ALA TRP HIS PHE SER PHE ASN SEQRES 7 A 283 VAL LYS PHE TYR PRO PRO ASP PRO ALA GLN LEU SER GLU SEQRES 8 A 283 ASP ILE THR ARG TYR TYR LEU CYS LEU GLN LEU ARG ASP SEQRES 9 A 283 ASP ILE VAL SER GLY ARG LEU PRO CYS SER PHE VAL THR SEQRES 10 A 283 LEU ALA LEU LEU GLY SER TYR THR VAL GLN SER GLU LEU SEQRES 11 A 283 GLY ASP TYR ASP PRO ASP GLU CYS GLY SER ASP TYR ILE SEQRES 12 A 283 SER GLU PHE ARG PHE ALA PRO ASN HIS THR LYS GLU LEU SEQRES 13 A 283 GLU ASP LYS VAL ILE GLU LEU HIS LYS SER HIS ARG GLY SEQRES 14 A 283 MET THR PRO ALA GLU ALA GLU MET HIS PHE LEU GLU ASN SEQRES 15 A 283 ALA LYS LYS LEU SER MET TYR GLY VAL ASP LEU HIS HIS SEQRES 16 A 283 ALA LYS ASP SER GLU GLY VAL GLU ILE MET LEU GLY VAL SEQRES 17 A 283 CYS ALA SER GLY LEU LEU ILE TYR ARG ASP ARG LEU ARG SEQRES 18 A 283 ILE ASN ARG PHE ALA TRP PRO LYS VAL LEU LYS ILE SER SEQRES 19 A 283 TYR LYS ARG ASN ASN PHE TYR ILE LYS ILE ARG PRO GLY SEQRES 20 A 283 GLU PHE GLU GLN PHE GLU SER THR ILE GLY PHE LYS LEU SEQRES 21 A 283 PRO ASN HIS ARG ALA ALA LYS ARG LEU TRP LYS VAL CYS SEQRES 22 A 283 VAL GLU HIS HIS THR PHE PHE ARG LEU LEU SEQRES 1 B 12 ALA ARG HIS LYS GLY THR TYR PHE THR HIS GLU ALA FORMUL 3 HOH *144(H2 O) HELIX 1 1 ARG A 131 LEU A 143 1 13 HELIX 2 2 GLU A 147 ASP A 149 5 3 HELIX 3 3 GLU A 170 VAL A 175 1 6 HELIX 4 4 ASP A 192 LEU A 196 5 5 HELIX 5 5 GLU A 198 SER A 215 1 18 HELIX 6 6 SER A 221 GLY A 238 1 18 HELIX 7 7 THR A 260 HIS A 274 1 15 HELIX 8 8 THR A 278 LYS A 292 1 15 HELIX 9 9 ASN A 369 LEU A 389 1 21 SHEET 1 A 5 GLU A 121 GLU A 127 0 SHEET 2 A 5 SER A 109 ILE A 115 -1 N MET A 110 O VAL A 126 SHEET 3 A 5 TRP A 180 VAL A 186 1 O PHE A 182 N LYS A 113 SHEET 4 A 5 PHE A 151 ARG A 156 -1 N THR A 154 O SER A 183 SHEET 5 A 5 LYS A 162 TRP A 164 -1 O ASN A 163 N TYR A 155 SHEET 1 B 4 ASP A 299 LYS A 304 0 SHEET 2 B 4 GLU A 310 VAL A 315 -1 O LEU A 313 N HIS A 301 SHEET 3 B 4 GLY A 319 TYR A 323 -1 O LEU A 321 N GLY A 314 SHEET 4 B 4 ASN A 330 ALA A 333 -1 O PHE A 332 N LEU A 320 SHEET 1 C 4 SER A 361 LYS A 366 0 SHEET 2 C 4 ASN A 346 ILE A 351 -1 N ILE A 349 O ILE A 363 SHEET 3 C 4 VAL A 337 LYS A 343 -1 N SER A 341 O TYR A 348 SHEET 4 C 4 THR B 6 PHE B 8 -1 O TYR B 7 N ILE A 340 CRYST1 135.000 135.000 50.520 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007407 0.004277 0.000000 0.00000 SCALE2 0.000000 0.008553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019794 0.00000