PDB Short entry for 3BJR HEADER HYDROLASE 04-DEC-07 3BJR TITLE CRYSTAL STRUCTURE OF A PUTATIVE CARBOXYLESTERASE (LP_1002) FROM TITLE 2 LACTOBACILLUS PLANTARUM WCFS1 AT 2.09 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CARBOXYLESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM WCFS1; SOURCE 3 ORGANISM_TAXID: 220668; SOURCE 4 STRAIN: WCFS1 / NCIMB 8826; SOURCE 5 ATCC: BAA-793; SOURCE 6 GENE: NP_784706.1, LP_1002; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BJR 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BJR 1 REMARK LINK REVDAT 5 25-OCT-17 3BJR 1 REMARK REVDAT 4 13-JUL-11 3BJR 1 VERSN REVDAT 3 23-MAR-11 3BJR 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BJR 1 VERSN REVDAT 1 18-DEC-07 3BJR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE CARBOXYLESTERASE (NP_784706.1) JRNL TITL 2 FROM LACTOBACILLUS PLANTARUM AT 2.09 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 29517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : 2.05000 REMARK 3 B33 (A**2) : -3.07000 REMARK 3 B12 (A**2) : 1.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1970 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1223 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2718 ; 1.739 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3010 ; 1.095 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 4.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;35.931 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;11.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;13.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2220 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 402 ; 0.207 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1250 ; 0.183 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 961 ; 0.182 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 919 ; 0.091 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.193 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.211 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.289 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.159 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 2.047 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 494 ; 0.517 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2017 ; 3.177 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 807 ; 5.049 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 701 ; 6.191 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2420 50.2350 7.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.1212 T22: -0.0824 REMARK 3 T33: -0.1255 T12: 0.0204 REMARK 3 T13: -0.0012 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.0977 L22: 1.2413 REMARK 3 L33: 3.6581 L12: -0.6860 REMARK 3 L13: -0.7590 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.0265 S13: 0.0592 REMARK 3 S21: 0.0401 S22: -0.0400 S23: -0.0029 REMARK 3 S31: -0.2156 S32: -0.1226 S33: -0.0269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. GLYCEROL MOLECULE FROM CRYOPROTECTANT IS MODELED IN THIS REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3BJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840, 0.97939, 0.97953 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 29.285 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.8M (NH4)2SO4, 0.1M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.38000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.19000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.19000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 ASP A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 ALA A 26 REMARK 465 HIS A 27 REMARK 465 GLN A 28 REMARK 465 PRO A 160 REMARK 465 LYS A 161 REMARK 465 ASP A 162 REMARK 465 ASP A 163 REMARK 465 ALA A 164 REMARK 465 THR A 165 REMARK 465 LEU A 166 REMARK 465 ALA A 167 REMARK 465 PRO A 242 REMARK 465 ASP A 243 REMARK 465 ALA A 244 REMARK 465 ASN A 245 REMARK 465 GLN A 246 REMARK 465 PRO A 247 REMARK 465 HIS A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A -2 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A -1 OE1 NE2 REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 THR A 168 OG1 CG2 REMARK 470 THR A 170 OG1 CG2 REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 17.73 58.31 REMARK 500 SER A 113 -131.80 57.00 REMARK 500 THR A 128 -93.75 -113.01 REMARK 500 THR A 170 67.99 -115.62 REMARK 500 GLU A 175 33.50 -94.86 REMARK 500 ASN A 263 38.07 -96.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379491 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. DBREF 3BJR A 1 264 UNP Q88Y04 Q88Y04_LACPL 1 264 SEQADV 3BJR MSE A -18 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR GLY A -17 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR SER A -16 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR ASP A -15 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR LYS A -14 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR ILE A -13 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -12 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -11 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -10 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -9 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -8 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR HIS A -7 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR GLU A -6 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR ASN A -5 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR LEU A -4 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR TYR A -3 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR PHE A -2 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR GLN A -1 UNP Q88Y04 EXPRESSION TAG SEQADV 3BJR GLY A 0 UNP Q88Y04 EXPRESSION TAG SEQRES 1 A 283 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 283 ASN LEU TYR PHE GLN GLY MSE GLN VAL ILE LYS GLN LYS SEQRES 3 A 283 LEU THR ALA THR CYS ALA GLN LEU THR GLY TYR LEU HIS SEQRES 4 A 283 GLN PRO ASP THR ASN ALA HIS GLN THR ASN LEU PRO ALA SEQRES 5 A 283 ILE ILE ILE VAL PRO GLY GLY SER TYR THR HIS ILE PRO SEQRES 6 A 283 VAL ALA GLN ALA GLU SER LEU ALA MSE ALA PHE ALA GLY SEQRES 7 A 283 HIS GLY TYR GLN ALA PHE TYR LEU GLU TYR THR LEU LEU SEQRES 8 A 283 THR ASP GLN GLN PRO LEU GLY LEU ALA PRO VAL LEU ASP SEQRES 9 A 283 LEU GLY ARG ALA VAL ASN LEU LEU ARG GLN HIS ALA ALA SEQRES 10 A 283 GLU TRP HIS ILE ASP PRO GLN GLN ILE THR PRO ALA GLY SEQRES 11 A 283 PHE SER VAL GLY GLY HIS ILE VAL ALA LEU TYR ASN ASP SEQRES 12 A 283 TYR TRP ALA THR ARG VAL ALA THR GLU LEU ASN VAL THR SEQRES 13 A 283 PRO ALA MSE LEU LYS PRO ASN ASN VAL VAL LEU GLY TYR SEQRES 14 A 283 PRO VAL ILE SER PRO LEU LEU GLY PHE PRO LYS ASP ASP SEQRES 15 A 283 ALA THR LEU ALA THR TRP THR PRO THR PRO ASN GLU LEU SEQRES 16 A 283 ALA ALA ASP GLN HIS VAL ASN SER ASP ASN GLN PRO THR SEQRES 17 A 283 PHE ILE TRP THR THR ALA ASP ASP PRO ILE VAL PRO ALA SEQRES 18 A 283 THR ASN THR LEU ALA TYR ALA THR ALA LEU ALA THR ALA SEQRES 19 A 283 LYS ILE PRO TYR GLU LEU HIS VAL PHE LYS HIS GLY PRO SEQRES 20 A 283 HIS GLY LEU ALA LEU ALA ASN ALA GLN THR ALA TRP LYS SEQRES 21 A 283 PRO ASP ALA ASN GLN PRO HIS VAL ALA HIS TRP LEU THR SEQRES 22 A 283 LEU ALA LEU GLU TRP LEU ALA ASP ASN ARG MODRES 3BJR MSE A 1 MET SELENOMETHIONINE MODRES 3BJR MSE A 55 MET SELENOMETHIONINE MODRES 3BJR MSE A 140 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 55 8 HET MSE A 140 8 HET GOL A 265 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *143(H2 O) HELIX 1 1 PRO A 46 GLY A 59 1 14 HELIX 2 2 LEU A 80 HIS A 96 1 17 HELIX 3 3 HIS A 96 HIS A 101 1 6 HELIX 4 4 VAL A 114 TRP A 126 1 13 HELIX 5 5 THR A 128 ASN A 135 1 8 HELIX 6 6 THR A 137 LYS A 142 1 6 HELIX 7 7 THR A 172 HIS A 181 5 10 HELIX 8 8 ALA A 202 ALA A 215 1 14 HELIX 9 9 PRO A 228 ALA A 239 1 12 HELIX 10 10 ALA A 250 ASN A 263 1 14 SHEET 1 A 8 GLN A 2 LYS A 7 0 SHEET 2 A 8 GLN A 14 LEU A 19 -1 O GLY A 17 N ILE A 4 SHEET 3 A 8 GLN A 63 GLU A 68 -1 O ALA A 64 N TYR A 18 SHEET 4 A 8 LEU A 31 VAL A 37 1 N ILE A 36 O PHE A 65 SHEET 5 A 8 ILE A 102 PHE A 112 1 O ALA A 110 N VAL A 37 SHEET 6 A 8 VAL A 146 GLY A 149 1 O GLY A 149 N GLY A 111 SHEET 7 A 8 THR A 189 THR A 194 1 O PHE A 190 N LEU A 148 SHEET 8 A 8 TYR A 219 PHE A 224 1 O PHE A 224 N THR A 193 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C ALA A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N ALA A 56 1555 1555 1.32 LINK C ALA A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N LEU A 141 1555 1555 1.33 CISPEP 1 GLN A 76 PRO A 77 0 0.46 SITE 1 AC1 4 HIS A 44 ILE A 45 VAL A 47 ALA A 48 CRYST1 93.620 93.620 99.570 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010681 0.006167 0.000000 0.00000 SCALE2 0.000000 0.012334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010043 0.00000