PDB Short entry for 3BJY
HEADER    TRANSFERASE/DNA                         05-DEC-07   3BJY              
TITLE     CATALYTIC CORE OF REV1 IN COMPLEX WITH DNA (MODIFIED                  
TITLE    2 TEMPLATE GUANINE) AND INCOMING NUCLEOTIDE                            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA REPAIR PROTEIN REV1;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CATALYTIC CORE;                                            
COMPND   5 EC: 2.7.7.-;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: DNA (5'-D(*DTP*DAP*DAP*(P)                                 
COMPND   9 P*DGP*DTP*DAP*DGP*DGP*DGP*DGP*DAP*DGP*DGP*DAP*DT)-3');               
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-                                                   
COMPND  14 D(*DAP*DTP*DCP*DCP*DTP*DCP*DCP*DCP*DCP*DTP*DAP*(DOC))-3');           
COMPND  15 CHAIN: P;                                                            
COMPND  16 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;                       
SOURCE   3 ORGANISM_COMMON: YEAST;                                              
SOURCE   4 ORGANISM_TAXID: 4932;                                                
SOURCE   5 GENE: REV1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE;                         
SOURCE   7 EXPRESSION_SYSTEM_COMMON: YEAST;                                     
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 4932;                                       
SOURCE   9 EXPRESSION_SYSTEM_STRAIN: BJ5464;                                    
SOURCE  10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  11 EXPRESSION_SYSTEM_PLASMID: PBJ954;                                   
SOURCE  12 MOL_ID: 2;                                                           
SOURCE  13 SYNTHETIC: YES;                                                      
SOURCE  14 MOL_ID: 3;                                                           
SOURCE  15 SYNTHETIC: YES                                                       
KEYWDS    DNA POLYMERASE, PROTEIN-DNA COMPLEX, ADDUCT, BYPASS, DNA              
KEYWDS   2 DAMAGE, DNA REPAIR, DNA SYNTHESIS, DNA-BINDING, MAGNESIUM,           
KEYWDS   3 METAL-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, TRANSFERASE,         
KEYWDS   4 TRANSFERASE/DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL                 
REVDAT   2   24-FEB-09 3BJY    1       VERSN                                    
REVDAT   1   28-OCT-08 3BJY    0                                                
JRNL        AUTH   D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,                    
JRNL        AUTH 2 A.K.AGGARWAL                                                 
JRNL        TITL   PROTEIN-TEMPLATE-DIRECTED SYNTHESIS ACROSS AN                
JRNL        TITL 2 ACROLEIN-DERIVED DNA ADDUCT BY YEAST REV1 DNA                
JRNL        TITL 3 POLYMERASE                                                   
JRNL        REF    STRUCTURE                     V.  16   239 2008              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   18275815                                                     
JRNL        DOI    10.1016/J.STR.2007.12.009                                    
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.41 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,             
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 38556                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : NULL                            
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.231                           
REMARK   3   FREE R VALUE                     : 0.241                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 3862                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3370                                    
REMARK   3   NUCLEIC ACID ATOMS       : 572                                     
REMARK   3   HETEROGEN ATOMS          : 30                                      
REMARK   3   SOLVENT ATOMS            : 158                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : NULL                            
REMARK   3   BOND ANGLES            (DEGREES) : NULL                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : NULL                                                 
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3BJY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-07.                  
REMARK 100 THE RCSB ID CODE IS RCSB045612.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 18-JUL-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 17-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 210                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 38556                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.410                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 5.400                              
REMARK 200  R MERGE                    (I) : 0.04900                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 32.1000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.50                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.90                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.16400                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 8.800                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: 2AQ4                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 71.74                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.35                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 5K MME, 0.4M AMMONOIUM           
REMARK 280  SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE         
REMARK 280  293K                                                                
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -X,Y,-Z+1/2                                             
REMARK 290       4555   X,-Y,-Z                                                 
REMARK 290       5555   X+1/2,Y+1/2,Z                                           
REMARK 290       6555   -X+1/2,-Y+1/2,Z+1/2                                     
REMARK 290       7555   -X+1/2,Y+1/2,-Z+1/2                                     
REMARK 290       8555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       27.83850            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       27.83850            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000       90.53100            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       99.78900            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   6 -1.000000  0.000000  0.000000       90.53100            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       99.78900            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       27.83850            
REMARK 290   SMTRY1   7 -1.000000  0.000000  0.000000       90.53100            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       99.78900            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       27.83850            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000       90.53100            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000       99.78900            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASN A   478                                                      
REMARK 465     ILE A   479                                                      
REMARK 465     HIS A   480                                                      
REMARK 465     ASN A   481                                                      
REMARK 465     THR A   482                                                      
REMARK 465     ASN A   483                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER;            
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 305    CG   CD   CE   NZ                                   
REMARK 470     TYR A 347    CG   CD1  CD2  CE1  CE2  CZ   OH                    
REMARK 470     LYS A 353    CG   CD   CE   NZ                                   
REMARK 470     ARG A 386    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 430    CG   CD   CE   NZ                                   
REMARK 470     GLU A 439    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 453    CG   CD   CE   NZ                                   
REMARK 470     GLU A 540    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 616    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 653    CG   CD   CE   NZ                                   
REMARK 470     LYS A 673    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   ND2  ASN A   459     O    HOH A   809              2.03            
REMARK 500   OP2  DOC P    12     O    HOH P   144              2.11            
REMARK 500   OE1  GLN A   495     NE2  GLN A   499              2.14            
REMARK 500   O    CYS A   510     O    ILE A   531              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    PHE A 367   CB  -  CG  -  CD2 ANGL. DEV. =  -5.4 DEGREES          
REMARK 500    PHE A 367   CB  -  CG  -  CD1 ANGL. DEV. =   5.0 DEGREES          
REMARK 500    LEU A 460   CA  -  CB  -  CG  ANGL. DEV. =  14.9 DEGREES          
REMARK 500     DG T   5   N9  -  C1' -  C2' ANGL. DEV. =   9.6 DEGREES          
REMARK 500     DT T   6   C5' -  C4' -  C3' ANGL. DEV. = -16.0 DEGREES          
REMARK 500     DT T   6   O4' -  C1' -  N1  ANGL. DEV. =   3.5 DEGREES          
REMARK 500     DG T   8   C3' -  C2' -  C1' ANGL. DEV. =  -5.6 DEGREES          
REMARK 500     DG T   8   N9  -  C1' -  C2' ANGL. DEV. =  11.9 DEGREES          
REMARK 500     DG T   8   O4' -  C1' -  N9  ANGL. DEV. =   5.4 DEGREES          
REMARK 500     DG T   9   O4' -  C1' -  N9  ANGL. DEV. =   2.8 DEGREES          
REMARK 500     DG T   9   C4  -  N9  -  C1' ANGL. DEV. =   8.1 DEGREES          
REMARK 500     DG T  10   O4' -  C1' -  N9  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DG T  11   N9  -  C1' -  C2' ANGL. DEV. =   9.2 DEGREES          
REMARK 500     DG T  11   O4' -  C1' -  N9  ANGL. DEV. =   2.3 DEGREES          
REMARK 500     DG T  13   N9  -  C1' -  C2' ANGL. DEV. =  10.4 DEGREES          
REMARK 500     DG T  13   O4' -  C1' -  N9  ANGL. DEV. =   4.2 DEGREES          
REMARK 500     DG T  14   N9  -  C1' -  C2' ANGL. DEV. =  10.9 DEGREES          
REMARK 500     DG T  14   O4' -  C1' -  N9  ANGL. DEV. =   2.7 DEGREES          
REMARK 500     DA T  15   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500     DC P   3   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DC P   4   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DC P   6   O4' -  C1' -  N1  ANGL. DEV. =   2.1 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A 306      104.72     71.82                                   
REMARK 500    CYS A 365       65.37     24.69                                   
REMARK 500    LYS A 396      -88.41   -127.60                                   
REMARK 500    ASN A 397       50.52    -96.52                                   
REMARK 500    ASN A 456       68.55   -113.18                                   
REMARK 500    ASN A 502     -136.91     81.33                                   
REMARK 500    LYS A 525      -65.64    -15.70                                   
REMARK 500    PRO A 526       85.04    -58.03                                   
REMARK 500    ILE A 531      -72.85    -93.08                                   
REMARK 500    THR A 532       93.35     52.53                                   
REMARK 500    SER A 567       72.30     37.40                                   
REMARK 500    ASP A 613       86.76   -172.85                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500     DA T   3         0.08    SIDE_CHAIN                              
REMARK 500     DG T   5         0.09    SIDE_CHAIN                              
REMARK 500     DG T  10         0.05    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 739                 
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 297                  
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 298                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2AQ4   RELATED DB: PDB                                   
REMARK 900 CATALYTIC CORE OF REV1 IN COMPLEX WITH DNA AND INCOMING              
REMARK 900 NULCEOTIDE                                                           
DBREF  3BJY A  305   738  UNP    P12689   REV1_YEAST     305    738             
DBREF  3BJY T    1    16  PDB    3BJY     3BJY             1     16             
DBREF  3BJY P    1    12  PDB    3BJY     3BJY             1     12             
SEQRES   1 A  434  LYS ARG ILE VAL ALA CYS ASP ASP PRO ASP PHE LEU THR          
SEQRES   2 A  434  SER TYR PHE ALA HIS SER ARG LEU HIS HIS LEU SER ALA          
SEQRES   3 A  434  TRP LYS ALA ASN LEU LYS ASP LYS PHE LEU ASN GLU ASN          
SEQRES   4 A  434  ILE HIS LYS TYR THR LYS ILE THR ASP LYS ASP THR TYR          
SEQRES   5 A  434  ILE ILE PHE HIS ILE ASP PHE ASP CYS PHE PHE ALA THR          
SEQRES   6 A  434  VAL ALA TYR LEU CYS ARG SER SER SER PHE SER ALA CYS          
SEQRES   7 A  434  ASP PHE LYS ARG ASP PRO ILE VAL VAL CYS HIS GLY THR          
SEQRES   8 A  434  LYS ASN SER ASP ILE ALA SER CYS ASN TYR VAL ALA ARG          
SEQRES   9 A  434  SER TYR GLY ILE LYS ASN GLY MET TRP VAL SER GLN ALA          
SEQRES  10 A  434  GLU LYS MET LEU PRO ASN GLY ILE LYS LEU ILE SER LEU          
SEQRES  11 A  434  PRO TYR THR PHE GLU GLN PHE GLN LEU LYS SER GLU ALA          
SEQRES  12 A  434  PHE TYR SER THR LEU LYS ARG LEU ASN ILE PHE ASN LEU          
SEQRES  13 A  434  ILE LEU PRO ILE SER ILE ASP GLU ALA VAL CYS VAL ARG          
SEQRES  14 A  434  ILE ILE PRO ASP ASN ILE HIS ASN THR ASN THR LEU ASN          
SEQRES  15 A  434  ALA ARG LEU CYS GLU GLU ILE ARG GLN GLU ILE PHE GLN          
SEQRES  16 A  434  GLY THR ASN GLY CYS THR VAL SER ILE GLY CYS SER ASP          
SEQRES  17 A  434  SER LEU VAL LEU ALA ARG LEU ALA LEU LYS MET ALA LYS          
SEQRES  18 A  434  PRO ASN GLY TYR ASN ILE THR PHE LYS SER ASN LEU SER          
SEQRES  19 A  434  GLU GLU PHE TRP SER SER PHE LYS LEU ASP ASP LEU PRO          
SEQRES  20 A  434  GLY VAL GLY HIS SER THR LEU SER ARG LEU GLU SER THR          
SEQRES  21 A  434  PHE ASP SER PRO HIS SER LEU ASN ASP LEU ARG LYS ARG          
SEQRES  22 A  434  TYR THR LEU ASP ALA LEU LYS ALA SER VAL GLY SER LYS          
SEQRES  23 A  434  LEU GLY MET LYS ILE HIS LEU ALA LEU GLN GLY GLN ASP          
SEQRES  24 A  434  ASP GLU GLU SER LEU LYS ILE LEU TYR ASP PRO LYS GLU          
SEQRES  25 A  434  VAL LEU GLN ARG LYS SER LEU SER ILE ASP ILE ASN TRP          
SEQRES  26 A  434  GLY ILE ARG PHE LYS ASN ILE THR GLN VAL ASP LEU PHE          
SEQRES  27 A  434  ILE GLU ARG GLY CYS GLN TYR LEU LEU GLU LYS LEU ASN          
SEQRES  28 A  434  GLU ILE ASN LYS THR THR SER GLN ILE THR LEU LYS LEU          
SEQRES  29 A  434  MET ARG ARG CYS LYS ASP ALA PRO ILE GLU PRO PRO LYS          
SEQRES  30 A  434  TYR MET GLY MET GLY ARG CYS ASP SER PHE SER ARG SER          
SEQRES  31 A  434  SER ARG LEU GLY ILE PRO THR ASN GLU PHE GLY ILE ILE          
SEQRES  32 A  434  ALA THR GLU MET LYS SER LEU TYR ARG THR LEU GLY CYS          
SEQRES  33 A  434  PRO PRO MET GLU LEU ARG GLY LEU ALA LEU GLN PHE ASN          
SEQRES  34 A  434  LYS LEU VAL ASP VAL                                          
SEQRES   1 T   16   DT  DA  DA   P  DG  DT  DA  DG  DG  DG  DG  DA  DG          
SEQRES   2 T   16   DG  DA  DT                                                  
SEQRES   1 P   12   DA  DT  DC  DC  DT  DC  DC  DC  DC  DT  DA DOC              
MODRES 3BJY   P T    4   DG                                                     
MODRES 3BJY DOC P   12   DC  2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE             
HET      P  T   4      25                                                       
HET    DOC  P  12      18                                                       
HET    DCP  A 739      28                                                       
HET     MG  A 297       1                                                       
HET     MG  A 298       1                                                       
HETNAM       P 2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE                   
HETNAM     DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE                           
HETNAM     DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE                                 
HETNAM      MG MAGNESIUM ION                                                    
FORMUL   2    P    C13 H18 N5 O7 P                                              
FORMUL   3  DOC    C9 H14 N3 O6 P                                               
FORMUL   4  DCP    C9 H16 N3 O13 P3                                             
FORMUL   5   MG    2(MG 2+)                                                     
FORMUL   7  HOH   *158(H2 O)                                                    
HELIX    1   1 ASP A  314  SER A  323  1                                  10    
HELIX    2   2 SER A  323  ASN A  343  1                                  21    
HELIX    3   3 CYS A  365  CYS A  374  1                                  10    
HELIX    4   4 SER A  376  SER A  380  5                                   5    
HELIX    5   5 ASN A  404  TYR A  410  1                                   7    
HELIX    6   6 TRP A  417  MET A  424  1                                   8    
HELIX    7   7 THR A  437  LEU A  455  1                                  19    
HELIX    8   8 THR A  484  ASN A  502  1                                  19    
HELIX    9   9 SER A  513  LYS A  525  1                                  13    
HELIX   10  10 PHE A  533  LEU A  537  5                                   5    
HELIX   11  11 SER A  538  SER A  543  1                                   6    
HELIX   12  12 LYS A  546  LEU A  550  5                                   5    
HELIX   13  13 GLY A  554  PHE A  565  1                                  12    
HELIX   14  14 SER A  570  TYR A  578  1                                   9    
HELIX   15  15 THR A  579  GLY A  588  1                                  10    
HELIX   16  16 GLY A  588  LEU A  599  1                                  12    
HELIX   17  17 ASP A  604  ASP A  613  1                                  10    
HELIX   18  18 ASP A  613  LEU A  618  1                                   6    
HELIX   19  19 ASN A  635  ILE A  657  1                                  23    
HELIX   20  20 GLU A  703  GLY A  719  1                                  17    
HELIX   21  21 PRO A  721  MET A  723  5                                   3    
SHEET    1   A 5 LEU A 460  SER A 465  0                                        
SHEET    2   A 5 GLU A 468  ILE A 474 -1  O  VAL A 472   N  LEU A 460           
SHEET    3   A 5 TYR A 356  PHE A 363 -1  N  ILE A 361   O  ALA A 469           
SHEET    4   A 5 VAL A 506  SER A 511 -1  O  SER A 511   N  ILE A 358           
SHEET    5   A 5 TYR A 529  ASN A 530  1  O  ASN A 530   N  CYS A 510           
SHEET    1   B 3 SER A 402  CYS A 403  0                                        
SHEET    2   B 3 ILE A 389  VAL A 391 -1  N  VAL A 391   O  SER A 402           
SHEET    3   B 3 ILE A 432  LEU A 434  1  O  LEU A 434   N  VAL A 390           
SHEET    1   C 4 LEU A 623  ILE A 627  0                                        
SHEET    2   C 4 LEU A 725  ASP A 737 -1  O  PHE A 732   N  LEU A 623           
SHEET    3   C 4 LYS A 659  ARG A 671 -1  N  LYS A 667   O  ALA A 729           
SHEET    4   C 4 CYS A 688  THR A 701 -1  O  LEU A 697   N  SER A 662           
SITE     1 AC1 21  MG A 297   MG A 298  ARG A 324  LEU A 328                    
SITE     2 AC1 21 ASP A 362  PHE A 363  ASP A 364  CYS A 365                    
SITE     3 AC1 21 PHE A 366  PHE A 367  ALA A 401  SER A 402                    
SITE     4 AC1 21 TYR A 405  ARG A 408  ASN A 414  ASP A 467                    
SITE     5 AC1 21 LYS A 525  HOH A 748  HOH A 753  HOH A 791                    
SITE     6 AC1 21 HOH A 850                                                     
SITE     1 AC2  6  MG A 298  ASP A 362  ASP A 467  GLU A 468                    
SITE     2 AC2  6 DCP A 739  DOC P  12                                          
SITE     1 AC3  5  MG A 297  ASP A 362  PHE A 363  ASP A 467                    
SITE     2 AC3  5 DCP A 739                                                     
CRYST1  181.062  199.578   55.677  90.00  90.00  90.00 C 2 2 21      8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.005523  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.005011  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.017961        0.00000