PDB Short entry for 3BKW HEADER TRANSFERASE 07-DEC-07 3BKW TITLE CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE TITLE 2 (NP_104914.1) FROM MESORHIZOBIUM LOTI AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MLL3908 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_104914.1, MLL3908; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_104914.1, S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE, KEYWDS 2 METHYLTRANSFERASE DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 3BKW 1 REMARK SEQADV REVDAT 5 24-JUL-19 3BKW 1 REMARK LINK REVDAT 4 25-OCT-17 3BKW 1 REMARK REVDAT 3 13-JUL-11 3BKW 1 VERSN REVDAT 2 24-FEB-09 3BKW 1 VERSN REVDAT 1 18-DEC-07 3BKW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE DEPENDENT JRNL TITL 2 METHYLTRANSFERASE (NP_104914.1) FROM MESORHIZOBIUM LOTI AT JRNL TITL 3 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 486 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3613 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2526 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4907 ; 1.530 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6066 ; 1.368 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 4.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;28.864 ;21.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ; 9.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;13.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4053 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 809 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 618 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2587 ; 0.148 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1662 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1791 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 424 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.048 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2467 ; 1.810 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 891 ; 0.356 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3517 ; 2.182 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 3.840 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1379 ; 5.235 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9150 30.5590 22.3760 REMARK 3 T TENSOR REMARK 3 T11: -0.1202 T22: -0.1824 REMARK 3 T33: -0.1825 T12: -0.0029 REMARK 3 T13: 0.0011 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3548 L22: 0.6865 REMARK 3 L33: 0.6819 L12: 0.0149 REMARK 3 L13: 0.0743 L23: 0.1189 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.0689 S13: -0.1301 REMARK 3 S21: 0.0291 S22: 0.0269 S23: -0.0549 REMARK 3 S31: 0.0249 S32: 0.0910 S33: -0.0148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 158 REMARK 3 RESIDUE RANGE : B 162 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9300 49.7410 13.1020 REMARK 3 T TENSOR REMARK 3 T11: -0.0766 T22: -0.1594 REMARK 3 T33: -0.1348 T12: 0.0194 REMARK 3 T13: -0.0189 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.7900 L22: 1.2709 REMARK 3 L33: 0.5674 L12: -0.1118 REMARK 3 L13: 0.3634 L23: -0.2794 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.0757 S13: 0.1343 REMARK 3 S21: 0.0863 S22: 0.0354 S23: 0.1364 REMARK 3 S31: -0.1610 S32: -0.1015 S33: 0.0574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3BKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000045646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.235 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MG ACETATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 7.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.16500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 TYR A 6 REMARK 465 ASP A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 PHE A 11 REMARK 465 PHE A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 TYR A 15 REMARK 465 SER A 16 REMARK 465 GLN A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 SER A 21 REMARK 465 ILE A 22 REMARK 465 GLU A 23 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 TYR B 6 REMARK 465 ASP B 7 REMARK 465 GLN B 8 REMARK 465 PRO B 9 REMARK 465 ASP B 10 REMARK 465 PHE B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 TYR B 15 REMARK 465 SER B 16 REMARK 465 GLN B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 SER B 21 REMARK 465 ILE B 22 REMARK 465 GLU B 23 REMARK 465 ASP B 159 REMARK 465 ALA B 160 REMARK 465 GLU B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 99 CE NZ REMARK 470 ARG A 153 CZ NH1 NH2 REMARK 470 LYS A 184 NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 80 CZ NH1 NH2 REMARK 470 ARG B 164 NH1 NH2 REMARK 470 LYS B 178 CE NZ REMARK 470 LYS B 184 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 99 53.78 -142.98 REMARK 500 ASP B 121 78.78 -101.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 249 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379544 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BKW A 1 242 UNP Q98F67 Q98F67_RHILO 1 242 DBREF 3BKW B 1 242 UNP Q98F67 Q98F67_RHILO 1 242 SEQADV 3BKW GLY A 0 UNP Q98F67 EXPRESSION TAG SEQADV 3BKW GLY B 0 UNP Q98F67 EXPRESSION TAG SEQRES 1 A 243 GLY MSE ALA GLN ASN ILE TYR ASP GLN PRO ASP PHE PHE SEQRES 2 A 243 ALA GLY TYR SER GLN LEU GLY ARG SER ILE GLU GLY LEU SEQRES 3 A 243 ASP GLY ALA ALA GLU TRP PRO ALA LEU ARG ALA MSE LEU SEQRES 4 A 243 PRO GLU VAL GLY GLY LEU ARG ILE VAL ASP LEU GLY CYS SEQRES 5 A 243 GLY PHE GLY TRP PHE CYS ARG TRP ALA HIS GLU HIS GLY SEQRES 6 A 243 ALA SER TYR VAL LEU GLY LEU ASP LEU SER GLU LYS MSE SEQRES 7 A 243 LEU ALA ARG ALA ARG ALA ALA GLY PRO ASP THR GLY ILE SEQRES 8 A 243 THR TYR GLU ARG ALA ASP LEU ASP LYS LEU HIS LEU PRO SEQRES 9 A 243 GLN ASP SER PHE ASP LEU ALA TYR SER SER LEU ALA LEU SEQRES 10 A 243 HIS TYR VAL GLU ASP VAL ALA ARG LEU PHE ARG THR VAL SEQRES 11 A 243 HIS GLN ALA LEU SER PRO GLY GLY HIS PHE VAL PHE SER SEQRES 12 A 243 THR GLU HIS PRO ILE TYR MSE ALA PRO ALA ARG PRO GLY SEQRES 13 A 243 TRP ALA ILE ASP ALA GLU GLY ARG ARG THR TRP PRO ILE SEQRES 14 A 243 ASP ARG TYR LEU VAL GLU GLY PRO ARG LYS THR ASP TRP SEQRES 15 A 243 LEU ALA LYS GLY VAL VAL LYS HIS HIS ARG THR VAL GLY SEQRES 16 A 243 THR THR LEU ASN ALA LEU ILE ARG SER GLY PHE ALA ILE SEQRES 17 A 243 GLU HIS VAL GLU GLU PHE CYS PRO THR ASP ALA GLN ILE SEQRES 18 A 243 THR ALA ARG PRO GLU LEU ALA GLU GLU LEU ASP ARG PRO SEQRES 19 A 243 MSE PHE LEU LEU VAL SER ALA ARG ARG SEQRES 1 B 243 GLY MSE ALA GLN ASN ILE TYR ASP GLN PRO ASP PHE PHE SEQRES 2 B 243 ALA GLY TYR SER GLN LEU GLY ARG SER ILE GLU GLY LEU SEQRES 3 B 243 ASP GLY ALA ALA GLU TRP PRO ALA LEU ARG ALA MSE LEU SEQRES 4 B 243 PRO GLU VAL GLY GLY LEU ARG ILE VAL ASP LEU GLY CYS SEQRES 5 B 243 GLY PHE GLY TRP PHE CYS ARG TRP ALA HIS GLU HIS GLY SEQRES 6 B 243 ALA SER TYR VAL LEU GLY LEU ASP LEU SER GLU LYS MSE SEQRES 7 B 243 LEU ALA ARG ALA ARG ALA ALA GLY PRO ASP THR GLY ILE SEQRES 8 B 243 THR TYR GLU ARG ALA ASP LEU ASP LYS LEU HIS LEU PRO SEQRES 9 B 243 GLN ASP SER PHE ASP LEU ALA TYR SER SER LEU ALA LEU SEQRES 10 B 243 HIS TYR VAL GLU ASP VAL ALA ARG LEU PHE ARG THR VAL SEQRES 11 B 243 HIS GLN ALA LEU SER PRO GLY GLY HIS PHE VAL PHE SER SEQRES 12 B 243 THR GLU HIS PRO ILE TYR MSE ALA PRO ALA ARG PRO GLY SEQRES 13 B 243 TRP ALA ILE ASP ALA GLU GLY ARG ARG THR TRP PRO ILE SEQRES 14 B 243 ASP ARG TYR LEU VAL GLU GLY PRO ARG LYS THR ASP TRP SEQRES 15 B 243 LEU ALA LYS GLY VAL VAL LYS HIS HIS ARG THR VAL GLY SEQRES 16 B 243 THR THR LEU ASN ALA LEU ILE ARG SER GLY PHE ALA ILE SEQRES 17 B 243 GLU HIS VAL GLU GLU PHE CYS PRO THR ASP ALA GLN ILE SEQRES 18 B 243 THR ALA ARG PRO GLU LEU ALA GLU GLU LEU ASP ARG PRO SEQRES 19 B 243 MSE PHE LEU LEU VAL SER ALA ARG ARG MODRES 3BKW MSE A 37 MET SELENOMETHIONINE MODRES 3BKW MSE A 77 MET SELENOMETHIONINE MODRES 3BKW MSE A 149 MET SELENOMETHIONINE MODRES 3BKW MSE A 234 MET SELENOMETHIONINE MODRES 3BKW MSE B 37 MET SELENOMETHIONINE MODRES 3BKW MSE B 77 MET SELENOMETHIONINE MODRES 3BKW MSE B 149 MET SELENOMETHIONINE MODRES 3BKW MSE B 234 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 77 13 HET MSE A 149 8 HET MSE A 234 8 HET MSE B 37 8 HET MSE B 77 8 HET MSE B 149 8 HET MSE B 234 8 HET EDO A 243 4 HET EDO A 244 4 HET EDO A 245 4 HET EDO A 246 4 HET EDO A 247 4 HET EDO A 248 4 HET EDO A 249 4 HET EDO B 243 4 HET EDO B 244 4 HET EDO B 245 4 HET EDO B 246 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EDO 11(C2 H6 O2) FORMUL 14 HOH *486(H2 O) HELIX 1 1 GLY A 24 ALA A 28 5 5 HELIX 2 2 GLU A 30 LEU A 38 1 9 HELIX 3 3 GLY A 54 HIS A 63 1 10 HELIX 4 4 SER A 74 ALA A 84 1 11 HELIX 5 5 ASP A 96 LEU A 100 5 5 HELIX 6 6 ALA A 115 VAL A 119 5 5 HELIX 7 7 ASP A 121 ALA A 132 1 12 HELIX 8 8 HIS A 145 ALA A 150 1 6 HELIX 9 9 ASP A 180 GLY A 185 1 6 HELIX 10 10 THR A 192 SER A 203 1 12 HELIX 11 11 THR A 216 ARG A 223 1 8 HELIX 12 12 PRO A 224 ASP A 231 5 8 HELIX 13 13 GLU B 30 LEU B 38 1 9 HELIX 14 14 GLY B 54 HIS B 63 1 10 HELIX 15 15 SER B 74 ALA B 84 1 11 HELIX 16 16 ASP B 96 LEU B 100 5 5 HELIX 17 17 ALA B 115 VAL B 119 5 5 HELIX 18 18 ASP B 121 ALA B 132 1 12 HELIX 19 19 HIS B 145 ALA B 150 1 6 HELIX 20 20 ASP B 180 GLY B 185 1 6 HELIX 21 21 THR B 192 SER B 203 1 12 HELIX 22 22 THR B 216 ARG B 223 1 8 HELIX 23 23 PRO B 224 ASP B 231 5 8 SHEET 1 A 7 ILE A 90 ARG A 94 0 SHEET 2 A 7 TYR A 67 ASP A 72 1 N GLY A 70 O THR A 91 SHEET 3 A 7 ARG A 45 LEU A 49 1 N ILE A 46 O TYR A 67 SHEET 4 A 7 PHE A 107 SER A 113 1 O TYR A 111 N LEU A 49 SHEET 5 A 7 LEU A 133 GLU A 144 1 O VAL A 140 N ALA A 110 SHEET 6 A 7 PHE A 235 ARG A 241 -1 O LEU A 236 N THR A 143 SHEET 7 A 7 ALA A 206 GLU A 212 -1 N GLU A 211 O LEU A 237 SHEET 1 B 3 ALA A 157 ILE A 158 0 SHEET 2 B 3 ARG A 164 ILE A 168 -1 O THR A 165 N ALA A 157 SHEET 3 B 3 TRP B 166 ILE B 168 -1 O TRP B 166 N ILE A 168 SHEET 1 C 2 GLY A 175 ARG A 177 0 SHEET 2 C 2 LYS A 188 HIS A 190 -1 O LYS A 188 N ARG A 177 SHEET 1 D 7 ILE B 90 ARG B 94 0 SHEET 2 D 7 TYR B 67 ASP B 72 1 N GLY B 70 O THR B 91 SHEET 3 D 7 ARG B 45 LEU B 49 1 N ILE B 46 O TYR B 67 SHEET 4 D 7 PHE B 107 SER B 113 1 O TYR B 111 N LEU B 49 SHEET 5 D 7 LEU B 133 GLU B 144 1 O SER B 134 N PHE B 107 SHEET 6 D 7 PHE B 235 ARG B 241 -1 O VAL B 238 N PHE B 141 SHEET 7 D 7 ALA B 206 GLU B 212 -1 N GLU B 211 O LEU B 237 SHEET 1 E 2 GLY B 175 ARG B 177 0 SHEET 2 E 2 LYS B 188 HIS B 190 -1 O HIS B 190 N GLY B 175 LINK C ALA A 36 N MSE A 37 1555 1555 1.34 LINK C MSE A 37 N LEU A 38 1555 1555 1.33 LINK C LYS A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N LEU A 78 1555 1555 1.34 LINK C TYR A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ALA A 150 1555 1555 1.33 LINK C PRO A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N PHE A 235 1555 1555 1.34 LINK C ALA B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N LEU B 38 1555 1555 1.34 LINK C LYS B 76 N MSE B 77 1555 1555 1.34 LINK C MSE B 77 N LEU B 78 1555 1555 1.34 LINK C TYR B 148 N MSE B 149 1555 1555 1.33 LINK C MSE B 149 N ALA B 150 1555 1555 1.33 LINK C PRO B 233 N MSE B 234 1555 1555 1.33 LINK C MSE B 234 N PHE B 235 1555 1555 1.34 CISPEP 1 GLY A 85 PRO A 86 0 -0.32 CISPEP 2 GLY B 85 PRO B 86 0 0.66 SITE 1 AC1 4 HIS A 117 HIS A 189 ARG A 191 THR A 196 SITE 1 AC2 6 GLY A 175 PRO A 176 HIS A 189 HIS A 190 SITE 2 AC2 6 ARG A 191 HOH A 342 SITE 1 AC3 6 LEU B 116 HIS B 117 THR B 143 ARG B 191 SITE 2 AC3 6 THR B 196 HOH B 458 SITE 1 AC4 6 ASP A 121 ALA A 123 ARG A 127 LYS A 184 SITE 2 AC4 6 HOH A 341 HOH A 366 SITE 1 AC5 7 ASP A 108 PRO A 135 GLY A 136 GLY A 137 SITE 2 AC5 7 HOH A 435 HOH A 446 HOH A 448 SITE 1 AC6 7 GLY B 175 PRO B 176 HIS B 189 ARG B 191 SITE 2 AC6 7 HOH B 304 HOH B 312 HOH B 373 SITE 1 AC7 5 ASN A 198 ILE A 201 ARG A 202 GLU B 208 SITE 2 AC7 5 HIS B 209 SITE 1 AC8 5 ARG A 153 GLY A 155 TRP A 156 ALA A 157 SITE 2 AC8 5 HOH A 458 SITE 1 AC9 5 MSE B 37 HOH B 295 HOH B 297 HOH B 416 SITE 2 AC9 5 HOH B 431 SITE 1 BC1 4 SER B 74 GLU B 75 LYS B 76 HOH B 325 SITE 1 BC2 4 PRO A 39 VAL A 41 HIS A 63 HIS B 101 CRYST1 58.330 58.480 142.030 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007041 0.00000