PDB Short entry for 3BQD
HEADER    PROTEIN BINDING                         20-DEC-07   3BQD              
TITLE     DOUBLING THE SIZE OF THE GLUCOCORTICOID RECEPTOR LIGAND BINDING POCKET
TITLE    2 BY DEACYLCORTIVAZOL                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GLUCOCORTICOID RECEPTOR;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: GLUCOCORTICOID RECEPTOR LIGAND BINDING DOMAIN (RESIDUES    
COMPND   5 525-777);                                                            
COMPND   6 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1;          
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES;                                                       
COMPND   9 MOL_ID: 2;                                                           
COMPND  10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1;                            
COMPND  11 CHAIN: B;                                                            
COMPND  12 FRAGMENT: NUCLEAR RECEPTOR COACTIVATOR 1 ISOFORM 1 COACTIVATOR MOTIF 
COMPND  13 (RESIDUES 739-751);                                                  
COMPND  14 SYNONYM: NCOA-1, STEROID RECEPTOR COACTIVATOR 1, SRC-1, RIP160,      
COMPND  15 PROTEIN HIN-2, RENAL CARCINOMA ANTIGEN NY-REN-52;                    
COMPND  16 EC: 2.3.1.48;                                                        
COMPND  17 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: NR3C1, GRL;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET24;                                    
SOURCE  11 MOL_ID: 2;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: SYNTHETIC PEPTIDE DERIVED FROM GENE SEQUENCE          
KEYWDS    GLUCOCORTICOID RECEPTOR, DEACYLCORTIVAZOL, SRC1, NUCLEAR RECEPTOR     
KEYWDS   2 COACTIVATOR 1 ISOFORM 1, DIMER INTERFACE, HORMONE BINDING POCKET,    
KEYWDS   3 CHARGE CLAMP, COACTIVATOR, ALTERNATIVE INITIATION, ALTERNATIVE       
KEYWDS   4 SPLICING, CHROMATIN REGULATOR, CYTOPLASM, DISEASE MUTATION, DNA-     
KEYWDS   5 BINDING, LIPID-BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN,      
KEYWDS   6 POLYMORPHISM, PSEUDOHERMAPHRODITISM, STEROID-BINDING, TRANSCRIPTION, 
KEYWDS   7 TRANSCRIPTION REGULATION, UBL CONJUGATION, ZINC, ZINC-FINGER,        
KEYWDS   8 ACYLTRANSFERASE, CHROMOSOMAL REARRANGEMENT, PROTO-ONCOGENE,          
KEYWDS   9 TRANSFERASE, PROTEIN BINDING                                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.E.XU                                                                
REVDAT   6   30-AUG-23 3BQD    1       REMARK                                   
REVDAT   5   20-OCT-21 3BQD    1       REMARK SEQADV HETSYN                     
REVDAT   4   24-FEB-09 3BQD    1       VERSN                                    
REVDAT   3   27-MAY-08 3BQD    1       CRYST1                                   
REVDAT   2   11-MAR-08 3BQD    1       JRNL                                     
REVDAT   1   15-JAN-08 3BQD    0                                                
JRNL        AUTH   K.SUINO-POWELL,Y.XU,C.ZHANG,Y.G.TAO,W.D.TOLBERT,S.S.SIMONS,  
JRNL        AUTH 2 H.E.XU                                                       
JRNL        TITL   DOUBLING THE SIZE OF THE GLUCOCORTICOID RECEPTOR LIGAND      
JRNL        TITL 2 BINDING POCKET BY DEACYLCORTIVAZOL.                          
JRNL        REF    MOL.CELL.BIOL.                V.  28  1915 2008              
JRNL        REFN                   ISSN 0270-7306                               
JRNL        PMID   18160712                                                     
JRNL        DOI    10.1128/MCB.01541-07                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 40.60                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 98101.000                      
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 90.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 20243                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.231                           
REMARK   3   FREE R VALUE                     : 0.261                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.800                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1583                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.007                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.50                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.66                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 69.70                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 2405                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.4830                       
REMARK   3   BIN FREE R VALUE                    : 0.4750                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 7.20                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 186                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.035                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2149                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 36                                      
REMARK   3   SOLVENT ATOMS            : 63                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 35.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 73.90                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 18.17000                                             
REMARK   3    B22 (A**2) : 18.17000                                             
REMARK   3    B33 (A**2) : -36.34000                                            
REMARK   3    B12 (A**2) : 20.47000                                             
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.41                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.78                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.48                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.72                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.008                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.500                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 20.60                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.010                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.33                                                 
REMARK   3   BSOL        : 49.20                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : DAC.PAR                                        
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : DAC.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3BQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-DEC-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000045836.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 30-JUL-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 5ID-B                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : SI 1 1 1                           
REMARK 200  OPTICS                         : MONOCHROMATOR SI 1 1 1             
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 225 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 20243                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 9.90000                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 32.1000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: PDB ENTRY 1M2Z                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): NULL                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M AMMONIUM SULFATE, 100 MM TRIS,     
REMARK 280  8% GLYCEROL, 3 MM N-HEXADECYL-BETA-MALTOSIDE, PH 8.5, VAPOR         
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 298.0K                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+2/3                                            
REMARK 290       3555   -X+Y,-X,Z+1/3                                           
REMARK 290       4555   -X,-Y,Z                                                 
REMARK 290       5555   Y,-X+Y,Z+2/3                                            
REMARK 290       6555   X-Y,X,Z+1/3                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       86.66667            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       43.33333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       86.66667            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       43.33333            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   523                                                      
REMARK 465     SER A   524                                                      
REMARK 465     ALA B   739                                                      
REMARK 465     GLN B   740                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLN B 741    CG   CD   OE1  NE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    PRO A   526     N    LEU A   528              1.92            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A 549   N   -  CA  -  C   ANGL. DEV. = -23.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A 526     -101.80    -47.65                                   
REMARK 500    GLN A 527      -39.55     15.34                                   
REMARK 500    TYR A 548     -144.02    114.07                                   
REMARK 500    ASP A 549       53.45    110.86                                   
REMARK 500    SER A 550       -7.67    -47.59                                   
REMARK 500    SER A 551       13.57    -65.54                                   
REMARK 500    VAL A 552      121.70      2.53                                   
REMARK 500    ALA A 618     -169.16    161.53                                   
REMARK 500    ASN A 619      -16.04     55.65                                   
REMARK 500    PRO A 637      -64.69    -14.65                                   
REMARK 500    ASP A 678       54.02    -91.37                                   
REMARK 500    SER A 682       20.92   -152.65                                   
REMARK 500    GLN A 683      -57.96    -28.79                                   
REMARK 500    GLU A 705     -162.23     51.61                                   
REMARK 500    ASN A 707     -154.34   -109.77                                   
REMARK 500    SER A 708      -40.83   -150.43                                   
REMARK 500    SER A 746       63.43     66.28                                   
REMARK 500    ASN A 766       -9.55    -42.70                                   
REMARK 500    LYS B 742      -55.06   -147.56                                   
REMARK 500    SER B 743       68.64     39.46                                   
REMARK 500    LEU B 744      -53.50    -10.25                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    TYR A 640         0.07    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAY A 301                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1M2Z   RELATED DB: PDB                                   
REMARK 900 GLUCOCORTICOID RECEPTOR LIGAND-BINDING DOMAIN BOUND TO               
REMARK 900 DEXAMETHASONE AND A TIF2 COACTIVATOR MOTIF                           
DBREF  3BQD A  525   777  UNP    P04150   GCR_HUMAN      525    777             
DBREF  3BQD B  739   751  UNP    Q15788   NCOA1_HUMAN   1429   1441             
SEQADV 3BQD GLY A  523  UNP  P04150              EXPRESSION TAG                 
SEQADV 3BQD SER A  524  UNP  P04150              EXPRESSION TAG                 
SEQADV 3BQD SER A  602  UNP  P04150    PHE   602 ENGINEERED MUTATION            
SEQRES   1 A  255  GLY SER LEU PRO GLN LEU THR PRO THR LEU VAL SER LEU          
SEQRES   2 A  255  LEU GLU VAL ILE GLU PRO GLU VAL LEU TYR ALA GLY TYR          
SEQRES   3 A  255  ASP SER SER VAL PRO ASP SER THR TRP ARG ILE MET THR          
SEQRES   4 A  255  THR LEU ASN MET LEU GLY GLY ARG GLN VAL ILE ALA ALA          
SEQRES   5 A  255  VAL LYS TRP ALA LYS ALA ILE PRO GLY PHE ARG ASN LEU          
SEQRES   6 A  255  HIS LEU ASP ASP GLN MET THR LEU LEU GLN TYR SER TRP          
SEQRES   7 A  255  MET SER LEU MET ALA PHE ALA LEU GLY TRP ARG SER TYR          
SEQRES   8 A  255  ARG GLN SER SER ALA ASN LEU LEU CYS PHE ALA PRO ASP          
SEQRES   9 A  255  LEU ILE ILE ASN GLU GLN ARG MET THR LEU PRO CYS MET          
SEQRES  10 A  255  TYR ASP GLN CYS LYS HIS MET LEU TYR VAL SER SER GLU          
SEQRES  11 A  255  LEU HIS ARG LEU GLN VAL SER TYR GLU GLU TYR LEU CYS          
SEQRES  12 A  255  MET LYS THR LEU LEU LEU LEU SER SER VAL PRO LYS ASP          
SEQRES  13 A  255  GLY LEU LYS SER GLN GLU LEU PHE ASP GLU ILE ARG MET          
SEQRES  14 A  255  THR TYR ILE LYS GLU LEU GLY LYS ALA ILE VAL LYS ARG          
SEQRES  15 A  255  GLU GLY ASN SER SER GLN ASN TRP GLN ARG PHE TYR GLN          
SEQRES  16 A  255  LEU THR LYS LEU LEU ASP SER MET HIS GLU VAL VAL GLU          
SEQRES  17 A  255  ASN LEU LEU ASN TYR CYS PHE GLN THR PHE LEU ASP LYS          
SEQRES  18 A  255  THR MET SER ILE GLU PHE PRO GLU MET LEU ALA GLU ILE          
SEQRES  19 A  255  ILE THR ASN GLN ILE PRO LYS TYR SER ASN GLY ASN ILE          
SEQRES  20 A  255  LYS LYS LEU LEU PHE HIS GLN LYS                              
SEQRES   1 B   13  ALA GLN GLN LYS SER LEU LEU GLN GLN LEU LEU THR GLU          
HET    DAY  A 301      36                                                       
HETNAM     DAY 1-[(1R,2R,3AS,3BS,10AR,10BS,11S,12AS)-1,11-DIHYDROXY-2,          
HETNAM   2 DAY  5,10A,12A-TETRAMETHYL-7-PHENYL-1,2,3,3A,3B,7,10,10A,            
HETNAM   3 DAY  10B,11,12,12A-DODECAHYDROCYCLOPENTA[5,6]NAPHTHO[1,2-            
HETNAM   4 DAY  F]INDAZOL-1-YL]-2-HYDROXYETHANONE                               
HETSYN     DAY DEACYLCORTIVAZOL; 11BETA,17,21-TRIHYDROXY-6,16ALPHA-             
HETSYN   2 DAY  DIMETHYL-2'-PHENYL-2'H-PREGNA-2,4,6-TRIENO(3,2-C)               
HETSYN   3 DAY  PYRAZOL-20-ONE; 2'H-PREGNA-2,4,6-TRIENO(3,2-C)PYRAZOL-          
HETSYN   4 DAY  20-ONE; 11,17,21-TRIHYDROXY-6,16-DIMETHYL-2'-PHENYL-            
HETSYN   5 DAY  (11BETA,16ALPHA)-(9CI); 6,16A-DIMETHYLPREGNA-4,6-               
HETSYN   6 DAY  DIENE-11B,17A,21-TRIOL-20-ONE-2'-PHENYL-(3,2-C)-                
HETSYN   7 DAY  PYRAZO                                                          
FORMUL   3  DAY    C30 H36 N2 O4                                                
FORMUL   4  HOH   *63(H2 O)                                                     
HELIX    1   1 THR A  531  GLU A  540  1                                  10    
HELIX    2   2 SER A  555  ALA A  580  1                                  26    
HELIX    3   3 GLY A  583  LEU A  587  5                                   5    
HELIX    4   4 HIS A  588  SER A  616  1                                  29    
HELIX    5   5 ASN A  630  THR A  635  1                                   6    
HELIX    6   6 MET A  639  LEU A  656  1                                  18    
HELIX    7   7 SER A  659  LEU A  672  1                                  14    
HELIX    8   8 SER A  682  ARG A  704  1                                  23    
HELIX    9   9 SER A  708  ASP A  742  1                                  35    
HELIX   10  10 PRO A  750  GLY A  767  1                                  18    
HELIX   11  11 SER B  743  LEU B  749  1                                   7    
SHEET    1   A 2 LEU A 621  ALA A 624  0                                        
SHEET    2   A 2 LEU A 627  ILE A 629 -1  O  ILE A 629   N  LEU A 621           
SHEET    1   B 2 SER A 674  PRO A 676  0                                        
SHEET    2   B 2 ILE A 769  LYS A 771 -1  O  LYS A 770   N  VAL A 675           
SITE     1 AC1 18 LEU A 563  ASN A 564  LEU A 566  GLY A 567                    
SITE     2 AC1 18 GLN A 570  MET A 601  MET A 604  ALA A 605                    
SITE     3 AC1 18 ALA A 607  LEU A 608  ARG A 611  PHE A 623                    
SITE     4 AC1 18 GLN A 642  LEU A 732  TYR A 735  CYS A 736                    
SITE     5 AC1 18 THR A 739  ILE A 747                                          
CRYST1   93.800   93.800  130.000  90.00  90.00 120.00 P 62          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010661  0.006155  0.000000        0.00000                         
SCALE2      0.000000  0.012310  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007692        0.00000