PDB Short entry for 3BRH HEADER HYDROLASE 21-DEC-07 3BRH TITLE PROTEIN TYROSINE PHOSPHATASE PTPN-22 (LYP) BOUND TO THE MONO- TITLE 2 PHOSPHORYLATED LCK ACTIVE SITE PEPTIDE CAVEAT 3BRH THERE ARE CHIRALITY ERRORS AND GEOMETRY VIOLATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 22; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SUBSTRATE TRAPPED CATALYTIC DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE 70Z-PEP, COMPND 6 LYMPHOID PHOSPHATASE,LYP,PEST-DOMAIN PHOSPHATASE,PEP; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: LCK ACTIVE SITE PEPTIDE; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN22, PTPN8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTWIN1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 14 OF THE PEPTIDE IS NATURALLY FOUND IN HOME SAPIENS(HUMAN). KEYWDS LYP, PTPN22, PHOSPHATASE, LCK, ALTERNATIVE SPLICING, CYTOPLASM, KEYWDS 2 HYDROLASE, POLYMORPHISM, PROTEIN PHOSPHATASE, SYSTEMIC LUPUS KEYWDS 3 ERYTHEMATOSUS EXPDTA X-RAY DIFFRACTION AUTHOR R.D.SEIDEL,J.LOVE,A.PISERCHIO,D.COWBURN REVDAT 4 21-FEB-24 3BRH 1 REMARK REVDAT 3 20-OCT-21 3BRH 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 25-OCT-17 3BRH 1 REMARK REVDAT 1 17-FEB-09 3BRH 0 JRNL AUTH R.SEIDEL,J.LOVE,A.PISERCHIO,D.COWBURN JRNL TITL LYP/PTPN22 PHOSPHATASE DOMAIN: SUBSTRATE RECOGNITION AND JRNL TITL 2 SPECIFICITY FOR SRC FAMILY KINASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 32679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1729 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00300 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00500 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : -0.00400 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : BENT SINGLE SI (111) CRYSTAL REMARK 200 MONOCHROMATOR WITH VERTICAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BICINE, 20% PEG6000, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.25500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 AUTHOR STATES THAT RESIDUE 394 IN CHAIN C AND D WAS PTR BUT THE REMARK 400 ENZYME CLEAVED IT INTO TYR AND PO4 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 299 REMARK 465 LYS A 300 REMARK 465 HIS A 301 REMARK 465 SER A 302 REMARK 465 GLY A 303 REMARK 465 THR A 304 REMARK 465 GLU A 305 REMARK 465 SER A 306 REMARK 465 GLN A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 HIS A 310 REMARK 465 THR B 77 REMARK 465 SER B 78 REMARK 465 ASP B 79 REMARK 465 GLU B 80 REMARK 465 HIS B 301 REMARK 465 SER B 302 REMARK 465 GLY B 303 REMARK 465 THR B 304 REMARK 465 GLU B 305 REMARK 465 SER B 306 REMARK 465 GLN B 307 REMARK 465 ALA B 308 REMARK 465 LYS B 309 REMARK 465 HIS B 310 REMARK 465 THR D 395 REMARK 465 ALA D 396 REMARK 465 ARG D 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CD NE CZ NH1 NH2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 51 NZ REMARK 470 SER A 180 OG REMARK 470 HIS A 196 C O REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ARG A 298 NE CZ NH1 NH2 REMARK 470 LYS B 39 CE NZ REMARK 470 GLN B 150 CD OE1 NE2 REMARK 470 LYS B 177 CD CE NZ REMARK 470 LYS B 300 CD CE NZ REMARK 470 TYR C 394 OH REMARK 470 TYR D 394 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 TYR D 394 O HOH B 571 1.44 REMARK 500 CZ TYR D 394 O HOH B 571 1.77 REMARK 500 O HOH A 580 O HOH C 579 1.80 REMARK 500 OE1 GLU A 280 O HOH A 329 2.01 REMARK 500 O HOH A 551 O HOH A 575 2.09 REMARK 500 CB ALA C 396 O HOH C 593 2.13 REMARK 500 CG MET B 149 O HOH A 570 2.13 REMARK 500 CE1 HIS A 196 CE2 TYR C 394 2.13 REMARK 500 O ASP A 197 O HOH A 573 2.14 REMARK 500 CE MET A 134 O HOH A 570 2.16 REMARK 500 O HOH A 351 O HOH A 466 2.16 REMARK 500 OE2 GLU B 72 O HOH B 402 2.16 REMARK 500 NE2 HIS A 196 CE2 TYR C 394 2.17 REMARK 500 CB ASP C 391 O HOH C 594 2.17 REMARK 500 NE2 GLN A 8 OD1 ASP A 12 2.17 REMARK 500 O HOH B 325 O HOH B 368 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 84 CD1 TYR A 84 CE1 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS A 166 CD - CE - NZ ANGL. DEV. = 16.8 DEGREES REMARK 500 LEU A 174 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASN A 179 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 SER A 200 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 SER A 200 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 67 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 123 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 LYS B 137 CD - CE - NZ ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 165 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 165 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 172 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 183 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 SER B 200 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 SER B 201 N - CA - C ANGL. DEV. = 22.7 DEGREES REMARK 500 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 213 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 246 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR C 394 N - CA - CB ANGL. DEV. = 27.6 DEGREES REMARK 500 TYR C 394 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 74 -7.68 -141.22 REMARK 500 ALA A 128 70.66 -100.43 REMARK 500 CYS A 129 152.76 179.67 REMARK 500 CYS A 139 135.40 -174.83 REMARK 500 MET A 149 -140.06 67.21 REMARK 500 ASN A 179 -85.69 21.53 REMARK 500 PRO A 199 -179.36 -42.13 REMARK 500 SER A 201 -157.99 -72.23 REMARK 500 ASP A 218 -167.85 -110.26 REMARK 500 SER A 227 -146.12 -128.11 REMARK 500 CYS A 231 -59.36 -125.26 REMARK 500 PHE A 256 129.61 -37.78 REMARK 500 VAL A 273 108.36 62.07 REMARK 500 SER B 82 19.69 -69.08 REMARK 500 ALA B 128 73.14 -110.18 REMARK 500 CYS B 129 147.48 -177.68 REMARK 500 MET B 149 -149.12 64.55 REMARK 500 SER B 180 -27.32 83.30 REMARK 500 HIS B 196 -26.64 67.59 REMARK 500 HIS B 196 -16.42 67.59 REMARK 500 SER B 201 104.75 118.33 REMARK 500 ASP B 218 -164.60 -118.04 REMARK 500 SER B 227 -131.20 -136.72 REMARK 500 CYS B 231 -59.79 -126.43 REMARK 500 CYS B 231 -44.91 -134.89 REMARK 500 PHE B 256 123.22 -28.28 REMARK 500 VAL B 273 89.39 77.23 REMARK 500 ASN C 392 88.20 96.24 REMARK 500 ASN C 392 92.47 96.24 REMARK 500 TYR C 394 -77.99 -159.19 REMARK 500 TYR C 394 -77.99 -159.36 REMARK 500 THR C 395 -100.89 89.66 REMARK 500 ALA C 396 -126.02 -179.17 REMARK 500 ASN D 392 -152.23 -76.71 REMARK 500 ASN D 392 -148.32 -76.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 199 SER A 200 64.77 REMARK 500 PRO A 199 SER A 200 64.12 REMARK 500 LYS B 191 ASN B 192 -53.82 REMARK 500 PRO B 199 SER B 200 -76.23 REMARK 500 SER B 200 SER B 201 -68.99 REMARK 500 ASP C 391 ASN C 392 -141.92 REMARK 500 GLU C 393 TYR C 394 -145.44 REMARK 500 GLU C 393 TYR C 394 -143.47 REMARK 500 ALA C 396 ARG C 397 -131.15 REMARK 500 ASP D 391 ASN D 392 143.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 199 -11.66 REMARK 500 GLU C 393 -10.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 400 DBREF 3BRH A 1 310 UNP Q9Y2R2 PTN22_HUMAN 1 310 DBREF 3BRH B 1 310 UNP Q9Y2R2 PTN22_HUMAN 1 310 DBREF 3BRH C 391 397 PDB 3BRH 3BRH 391 397 DBREF 3BRH D 391 397 PDB 3BRH 3BRH 391 397 SEQADV 3BRH ALA A 195 UNP Q9Y2R2 ASP 195 ENGINEERED MUTATION SEQADV 3BRH SER A 227 UNP Q9Y2R2 CYS 227 ENGINEERED MUTATION SEQADV 3BRH ALA B 195 UNP Q9Y2R2 ASP 195 ENGINEERED MUTATION SEQADV 3BRH SER B 227 UNP Q9Y2R2 CYS 227 ENGINEERED MUTATION SEQRES 1 A 310 MET ASP GLN ARG GLU ILE LEU GLN LYS PHE LEU ASP GLU SEQRES 2 A 310 ALA GLN SER LYS LYS ILE THR LYS GLU GLU PHE ALA ASN SEQRES 3 A 310 GLU PHE LEU LYS LEU LYS ARG GLN SER THR LYS TYR LYS SEQRES 4 A 310 ALA ASP LYS THR TYR PRO THR THR VAL ALA GLU LYS PRO SEQRES 5 A 310 LYS ASN ILE LYS LYS ASN ARG TYR LYS ASP ILE LEU PRO SEQRES 6 A 310 TYR ASP TYR SER ARG VAL GLU LEU SER LEU ILE THR SER SEQRES 7 A 310 ASP GLU ASP SER SER TYR ILE ASN ALA ASN PHE ILE LYS SEQRES 8 A 310 GLY VAL TYR GLY PRO LYS ALA TYR ILE ALA THR GLN GLY SEQRES 9 A 310 PRO LEU SER THR THR LEU LEU ASP PHE TRP ARG MET ILE SEQRES 10 A 310 TRP GLU TYR SER VAL LEU ILE ILE VAL MET ALA CYS MET SEQRES 11 A 310 GLU TYR GLU MET GLY LYS LYS LYS CYS GLU ARG TYR TRP SEQRES 12 A 310 ALA GLU PRO GLY GLU MET GLN LEU GLU PHE GLY PRO PHE SEQRES 13 A 310 SER VAL SER CYS GLU ALA GLU LYS ARG LYS SER ASP TYR SEQRES 14 A 310 ILE ILE ARG THR LEU LYS VAL LYS PHE ASN SER GLU THR SEQRES 15 A 310 ARG THR ILE TYR GLN PHE HIS TYR LYS ASN TRP PRO ALA SEQRES 16 A 310 HIS ASP VAL PRO SER SER ILE ASP PRO ILE LEU GLU LEU SEQRES 17 A 310 ILE TRP ASP VAL ARG CYS TYR GLN GLU ASP ASP SER VAL SEQRES 18 A 310 PRO ILE CYS ILE HIS SER SER ALA GLY CYS GLY ARG THR SEQRES 19 A 310 GLY VAL ILE CYS ALA ILE ASP TYR THR TRP MET LEU LEU SEQRES 20 A 310 LYS ASP GLY ILE ILE PRO GLU ASN PHE SER VAL PHE SER SEQRES 21 A 310 LEU ILE ARG GLU MET ARG THR GLN ARG PRO SER LEU VAL SEQRES 22 A 310 GLN THR GLN GLU GLN TYR GLU LEU VAL TYR ASN ALA VAL SEQRES 23 A 310 LEU GLU LEU PHE LYS ARG GLN MET ASP VAL ILE ARG ASP SEQRES 24 A 310 LYS HIS SER GLY THR GLU SER GLN ALA LYS HIS SEQRES 1 B 310 MET ASP GLN ARG GLU ILE LEU GLN LYS PHE LEU ASP GLU SEQRES 2 B 310 ALA GLN SER LYS LYS ILE THR LYS GLU GLU PHE ALA ASN SEQRES 3 B 310 GLU PHE LEU LYS LEU LYS ARG GLN SER THR LYS TYR LYS SEQRES 4 B 310 ALA ASP LYS THR TYR PRO THR THR VAL ALA GLU LYS PRO SEQRES 5 B 310 LYS ASN ILE LYS LYS ASN ARG TYR LYS ASP ILE LEU PRO SEQRES 6 B 310 TYR ASP TYR SER ARG VAL GLU LEU SER LEU ILE THR SER SEQRES 7 B 310 ASP GLU ASP SER SER TYR ILE ASN ALA ASN PHE ILE LYS SEQRES 8 B 310 GLY VAL TYR GLY PRO LYS ALA TYR ILE ALA THR GLN GLY SEQRES 9 B 310 PRO LEU SER THR THR LEU LEU ASP PHE TRP ARG MET ILE SEQRES 10 B 310 TRP GLU TYR SER VAL LEU ILE ILE VAL MET ALA CYS MET SEQRES 11 B 310 GLU TYR GLU MET GLY LYS LYS LYS CYS GLU ARG TYR TRP SEQRES 12 B 310 ALA GLU PRO GLY GLU MET GLN LEU GLU PHE GLY PRO PHE SEQRES 13 B 310 SER VAL SER CYS GLU ALA GLU LYS ARG LYS SER ASP TYR SEQRES 14 B 310 ILE ILE ARG THR LEU LYS VAL LYS PHE ASN SER GLU THR SEQRES 15 B 310 ARG THR ILE TYR GLN PHE HIS TYR LYS ASN TRP PRO ALA SEQRES 16 B 310 HIS ASP VAL PRO SER SER ILE ASP PRO ILE LEU GLU LEU SEQRES 17 B 310 ILE TRP ASP VAL ARG CYS TYR GLN GLU ASP ASP SER VAL SEQRES 18 B 310 PRO ILE CYS ILE HIS SER SER ALA GLY CYS GLY ARG THR SEQRES 19 B 310 GLY VAL ILE CYS ALA ILE ASP TYR THR TRP MET LEU LEU SEQRES 20 B 310 LYS ASP GLY ILE ILE PRO GLU ASN PHE SER VAL PHE SER SEQRES 21 B 310 LEU ILE ARG GLU MET ARG THR GLN ARG PRO SER LEU VAL SEQRES 22 B 310 GLN THR GLN GLU GLN TYR GLU LEU VAL TYR ASN ALA VAL SEQRES 23 B 310 LEU GLU LEU PHE LYS ARG GLN MET ASP VAL ILE ARG ASP SEQRES 24 B 310 LYS HIS SER GLY THR GLU SER GLN ALA LYS HIS SEQRES 1 C 7 ASP ASN GLU TYR THR ALA ARG SEQRES 1 D 7 ASP ASN GLU TYR THR ALA ARG HET PO4 A 400 5 HET PO4 B 400 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *294(H2 O) HELIX 1 1 GLN A 3 LYS A 17 1 15 HELIX 2 2 THR A 20 ASP A 41 1 22 HELIX 3 3 THR A 46 LYS A 51 1 6 HELIX 4 4 ASN A 54 ASN A 58 5 5 HELIX 5 5 LEU A 106 THR A 108 5 3 HELIX 6 6 THR A 109 TYR A 120 1 12 HELIX 7 7 ILE A 202 GLN A 216 1 15 HELIX 8 8 CYS A 231 ASP A 249 1 19 HELIX 9 9 SER A 257 ARG A 266 1 10 HELIX 10 10 THR A 275 ARG A 298 1 24 HELIX 11 11 ASP B 2 LYS B 17 1 16 HELIX 12 12 THR B 20 LYS B 42 1 23 HELIX 13 13 THR B 46 LYS B 51 1 6 HELIX 14 14 ASN B 54 ASN B 58 5 5 HELIX 15 15 THR B 109 TYR B 120 1 12 HELIX 16 16 ILE B 202 GLN B 216 1 15 HELIX 17 17 CYS B 231 ASP B 249 1 19 HELIX 18 18 SER B 257 THR B 267 1 11 HELIX 19 19 THR B 275 LYS B 300 1 26 SHEET 1 A 8 ALA A 87 ILE A 90 0 SHEET 2 A 8 TYR A 99 THR A 102 -1 O ALA A 101 N ASN A 88 SHEET 3 A 8 ILE A 223 HIS A 226 1 O ILE A 225 N ILE A 100 SHEET 4 A 8 ILE A 124 ALA A 128 1 N VAL A 126 O CYS A 224 SHEET 5 A 8 GLU A 181 TYR A 190 1 O PHE A 188 N ILE A 125 SHEET 6 A 8 TYR A 169 PHE A 178 -1 N ILE A 170 O HIS A 189 SHEET 7 A 8 PHE A 156 ARG A 165 -1 N LYS A 164 O ILE A 171 SHEET 8 A 8 LEU A 151 PHE A 153 -1 N PHE A 153 O PHE A 156 SHEET 1 B 2 TYR A 132 GLU A 133 0 SHEET 2 B 2 LYS A 136 LYS A 137 -1 O LYS A 136 N GLU A 133 SHEET 1 C 9 ARG B 70 GLU B 72 0 SHEET 2 C 9 TYR B 84 ILE B 90 -1 O ALA B 87 N VAL B 71 SHEET 3 C 9 TYR B 99 THR B 102 -1 O TYR B 99 N ILE B 90 SHEET 4 C 9 ILE B 223 HIS B 226 1 O ILE B 225 N ILE B 100 SHEET 5 C 9 ILE B 124 ALA B 128 1 N VAL B 126 O CYS B 224 SHEET 6 C 9 GLU B 181 TYR B 190 1 O TYR B 190 N MET B 127 SHEET 7 C 9 ILE B 170 PHE B 178 -1 N LEU B 174 O ILE B 185 SHEET 8 C 9 PHE B 156 ARG B 165 -1 N SER B 157 O LYS B 177 SHEET 9 C 9 LEU B 151 PHE B 153 -1 N PHE B 153 O PHE B 156 SHEET 1 D 2 TYR B 132 GLU B 133 0 SHEET 2 D 2 LYS B 136 LYS B 137 -1 O LYS B 136 N GLU B 133 CISPEP 1 SER A 200 SER A 201 0 -17.57 CISPEP 2 SER A 200 SER A 201 0 -15.13 CISPEP 3 THR C 395 ALA C 396 0 19.29 SITE 1 AC1 10 SER A 227 SER A 228 ALA A 229 GLY A 230 SITE 2 AC1 10 CYS A 231 GLY A 232 ARG A 233 GLN A 274 SITE 3 AC1 10 HOH A 401 TYR C 394 SITE 1 AC2 11 SER B 227 SER B 228 ALA B 229 GLY B 230 SITE 2 AC2 11 CYS B 231 GLY B 232 ARG B 233 GLN B 274 SITE 3 AC2 11 HOH B 499 HOH B 571 TYR D 394 CRYST1 60.850 48.510 119.970 90.00 103.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016434 0.000000 0.003942 0.00000 SCALE2 0.000000 0.020614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008572 0.00000