PDB Short entry for 3BRT HEADER TRANSFERASE/TRANSCRIPTION 21-DEC-07 3BRT TITLE NEMO/IKK ASSOCIATION DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT BETA, COMPND 3 INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT ALPHA; COMPND 4 CHAIN: A, C; COMPND 5 FRAGMENT: FUSION PROTEIN CONSISTS OF UNP RESIDUES 701-730 OF IKK-B COMPND 6 AND NEMO-BINDING DOMAIN OF IKK-A; COMPND 7 SYNONYM: I-KAPPA-B-KINASE BETA, IKBKB, IKK-BETA, IKK-B, I-KAPPA-B COMPND 8 KINASE 2, IKK2, NUCLEAR FACTOR NF-KAPPA-B INHIBITOR KINASE BETA, COMPND 9 NFKBIKB,I KAPPA-B KINASE ALPHA, IKBKA, IKK-ALPHA, IKK-A, IKAPPAB COMPND 10 KINASE, I-KAPPA-B KINASE 1, IKK1, CONSERVED HELIX-LOOP-HELIX, COMPND 11 UBIQUITOUS KINASE, NUCLEAR FACTOR NF-KAPPA-B, INHIBITOR KINASE ALPHA, COMPND 12 NFKBIKA,; COMPND 13 EC: 2.7.11.10; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 2; COMPND 16 MOLECULE: NF-KAPPA-B ESSENTIAL MODULATOR; COMPND 17 CHAIN: B, D; COMPND 18 SYNONYM: NEMO, NF-KAPPA-B ESSENTIAL MODIFIER, INHIBITOR OF NUCLEAR COMPND 19 FACTOR KAPPA-B KINASE SUBUNIT GAMMA, IKB KINASE SUBUNIT GAMMA, I- COMPND 20 KAPPA-B KINASE GAMMA, IKK-GAMMA, IKKG, IKB KINASE-ASSOCIATED PROTEIN COMPND 21 1, IKKAP1, FIP-3; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IKBKB, IKKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: IKBKG, FIP3, NEMO KEYWDS NEMO, IKK-GAMMA, FIP3, IKKAP1, NF-KB ESSENTIAL MODULATOR, KEYWDS 2 ACETYLATION, ATP-BINDING, CYTOPLASM, KINASE, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 4 TRANSFERASE, COILED COIL, DISEASE MUTATION, ECTODERMAL DYSPLASIA, KEYWDS 5 HOST-VIRUS INTERACTION, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION KEYWDS 6 REGULATION, TRANSFERASE-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SILVIAN REVDAT 6 21-FEB-24 3BRT 1 REMARK REVDAT 5 20-OCT-21 3BRT 1 REMARK SEQADV REVDAT 4 02-AUG-17 3BRT 1 SOURCE REMARK REVDAT 3 24-FEB-09 3BRT 1 VERSN REVDAT 2 20-MAY-08 3BRT 1 JRNL REVDAT 1 22-APR-08 3BRT 0 JRNL AUTH M.RUSHE,L.SILVIAN,S.BIXLER,L.L.CHEN,A.CHEUNG,S.BOWES, JRNL AUTH 2 H.CUERVO,S.BERKOWITZ,T.ZHENG,K.GUCKIAN,M.PELLEGRINI, JRNL AUTH 3 A.LUGOVSKOY JRNL TITL STRUCTURE OF A NEMO/IKK-ASSOCIATING DOMAIN REVEALS JRNL TITL 2 ARCHITECTURE OF THE INTERACTION SITE. JRNL REF STRUCTURE V. 16 798 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18462684 JRNL DOI 10.1016/J.STR.2008.02.012 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 11119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.337 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1610 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2170 ; 1.928 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 7.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;39.444 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;20.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;22.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1221 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 695 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1098 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.273 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.249 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 1.245 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1601 ; 2.028 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 626 ; 2.855 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 568 ; 4.440 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794,0.9799 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : UNDULATOR, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 8K, 0.1M TRIS PH 8, 0.2M REMARK 280 AMMONIUM CHLORIDE, 10MM DITHIOTHREITOL., MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.93450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.35350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.77800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.35350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.93450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.77800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8190 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 698 REMARK 465 MET A 699 REMARK 465 ALA A 700 REMARK 465 PRO A 701 REMARK 465 ALA A 702 REMARK 465 LYS A 703 REMARK 465 LYS A 704 REMARK 465 GLU A 744 REMARK 465 GLU B 44 REMARK 465 TRP B 45 REMARK 465 GLY B 46 REMARK 465 ALA B 47 REMARK 465 PRO B 48 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 ALA C 698 REMARK 465 MET C 699 REMARK 465 ALA C 700 REMARK 465 GLU C 744 REMARK 465 GLU D 44 REMARK 465 TRP D 45 REMARK 465 GLY D 46 REMARK 465 ALA D 47 REMARK 465 PRO D 48 REMARK 465 LYS D 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 711 CG CD OE1 OE2 REMARK 470 ASN A 714 CG OD1 ND2 REMARK 470 LEU A 715 CG CD1 CD2 REMARK 470 ARG A 728 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 729 CG CD OE1 OE2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS C 703 CG CD CE NZ REMARK 470 LYS C 704 CG CD CE NZ REMARK 470 GLU C 711 CG CD OE1 OE2 REMARK 470 GLN C 724 CG CD OE1 NE2 REMARK 470 ARG C 728 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 729 CG CD OE1 OE2 REMARK 470 GLN C 730 CG CD OE1 NE2 REMARK 470 ARG D 53 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 56 CG CD OE1 OE2 REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 470 GLN D 86 CG CD OE1 NE2 REMARK 470 ARG D 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 88 CG CD OE1 OE2 REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 GLU D 91 CG CD OE1 OE2 REMARK 470 LYS D 102 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 715 CB REMARK 480 GLU A 729 CB REMARK 480 VAL C 727 CB CG1 CG2 REMARK 480 LYS D 90 CB REMARK 480 LYS D 102 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 106 O HOH D 115 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 706 CD GLU A 706 OE1 0.069 REMARK 500 LEU A 715 CA LEU A 715 CB -0.402 REMARK 500 GLU A 729 CA GLU A 729 CB 0.253 REMARK 500 CYS B 54 CB CYS B 54 SG -0.121 REMARK 500 CYS B 76 CB CYS B 76 SG -0.124 REMARK 500 SER C 705 C SER C 705 O 0.239 REMARK 500 SER C 705 C GLU C 706 N 0.144 REMARK 500 CYS C 716 CB CYS C 716 SG -0.150 REMARK 500 VAL C 727 CA VAL C 727 CB -0.487 REMARK 500 LYS D 90 CA LYS D 90 CB -0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 729 CB - CA - C ANGL. DEV. = -26.4 DEGREES REMARK 500 GLU A 729 N - CA - CB ANGL. DEV. = 50.5 DEGREES REMARK 500 LEU B 79 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU B 80 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 VAL C 727 CB - CA - C ANGL. DEV. = -31.6 DEGREES REMARK 500 VAL C 727 N - CA - CB ANGL. DEV. = 28.7 DEGREES REMARK 500 VAL C 727 CA - CB - CG1 ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS D 90 N - CA - CB ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG D 101 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 705 GLU A 706 51.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BRV RELATED DB: PDB DBREF 3BRT A 701 730 UNP O14920 IKKB_HUMAN 701 730 DBREF 3BRT A 731 744 UNP O15111 IKKA_HUMAN 732 745 DBREF 3BRT B 44 111 UNP Q9Y6K9 NEMO_HUMAN 44 111 DBREF 3BRT C 701 730 UNP O14920 IKKB_HUMAN 701 730 DBREF 3BRT C 731 744 UNP O15111 IKKA_HUMAN 732 745 DBREF 3BRT D 44 111 UNP Q9Y6K9 NEMO_HUMAN 44 111 SEQADV 3BRT ALA A 698 UNP O14920 EXPRESSION TAG SEQADV 3BRT MET A 699 UNP O14920 EXPRESSION TAG SEQADV 3BRT ALA A 700 UNP O14920 EXPRESSION TAG SEQADV 3BRT TRP B 45 UNP Q9Y6K9 GLN 45 ENGINEERED MUTATION SEQADV 3BRT ALA C 698 UNP O14920 EXPRESSION TAG SEQADV 3BRT MET C 699 UNP O14920 EXPRESSION TAG SEQADV 3BRT ALA C 700 UNP O14920 EXPRESSION TAG SEQADV 3BRT TRP D 45 UNP Q9Y6K9 GLN 45 ENGINEERED MUTATION SEQRES 1 A 47 ALA MET ALA PRO ALA LYS LYS SER GLU GLU LEU VAL ALA SEQRES 2 A 47 GLU ALA HIS ASN LEU CYS THR LEU LEU GLU ASN ALA ILE SEQRES 3 A 47 GLN ASP THR VAL ARG GLU GLN GLY ASN SER MET MET ASN SEQRES 4 A 47 LEU ASP TRP SER TRP LEU THR GLU SEQRES 1 B 68 GLU TRP GLY ALA PRO GLU THR LEU GLN ARG CYS LEU GLU SEQRES 2 B 68 GLU ASN GLN GLU LEU ARG ASP ALA ILE ARG GLN SER ASN SEQRES 3 B 68 GLN ILE LEU ARG GLU ARG CYS GLU GLU LEU LEU HIS PHE SEQRES 4 B 68 GLN ALA SER GLN ARG GLU GLU LYS GLU PHE LEU MET CYS SEQRES 5 B 68 LYS PHE GLN GLU ALA ARG LYS LEU VAL GLU ARG LEU GLY SEQRES 6 B 68 LEU GLU LYS SEQRES 1 C 47 ALA MET ALA PRO ALA LYS LYS SER GLU GLU LEU VAL ALA SEQRES 2 C 47 GLU ALA HIS ASN LEU CYS THR LEU LEU GLU ASN ALA ILE SEQRES 3 C 47 GLN ASP THR VAL ARG GLU GLN GLY ASN SER MET MET ASN SEQRES 4 C 47 LEU ASP TRP SER TRP LEU THR GLU SEQRES 1 D 68 GLU TRP GLY ALA PRO GLU THR LEU GLN ARG CYS LEU GLU SEQRES 2 D 68 GLU ASN GLN GLU LEU ARG ASP ALA ILE ARG GLN SER ASN SEQRES 3 D 68 GLN ILE LEU ARG GLU ARG CYS GLU GLU LEU LEU HIS PHE SEQRES 4 D 68 GLN ALA SER GLN ARG GLU GLU LYS GLU PHE LEU MET CYS SEQRES 5 D 68 LYS PHE GLN GLU ALA ARG LYS LEU VAL GLU ARG LEU GLY SEQRES 6 D 68 LEU GLU LYS FORMUL 5 HOH *62(H2 O) HELIX 1 1 GLU A 706 GLN A 730 1 25 HELIX 2 2 GLY A 731 ASN A 732 5 2 HELIX 3 3 SER A 733 LEU A 737 5 5 HELIX 4 4 TRP A 739 THR A 743 5 5 HELIX 5 5 GLU B 49 LEU B 109 1 61 HELIX 6 6 LYS C 704 GLY C 731 1 28 HELIX 7 7 SER C 733 LEU C 737 5 5 HELIX 8 8 TRP C 739 THR C 743 5 5 HELIX 9 9 THR D 50 GLU D 110 1 61 CRYST1 41.869 105.556 56.707 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023884 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017635 0.00000