PDB Short entry for 3C08 HEADER IMMUNE SYSTEM 18-JAN-08 3C08 TITLE CRYSTAL STRUCTURE THE FAB FRAGMENT OF MATUZUMAB/EMD72000 (FAB72000) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATUZUMAB FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HUMAN/MOUSE CHIMERIC DERIVATIVE OF MOUSE MONOCLONAL COMPND 6 ANTIBODY 425; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MATUZUMAB FAB HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: HUMAN/MOUSE CHIMERIC DERIVATIVE OF MOUSE MONOCLONAL COMPND 12 ANTIBODY 425 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: ,; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: MYELOMA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 OTHER_DETAILS: HUMANIZED MOUSE; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 STRAIN: ,; SOURCE 17 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: MYELOMA; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 OTHER_DETAILS: HUMANIZED MOUSE KEYWDS FAB FRAGMENT, ANTITUMOR, DRUG, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.M.FERGUSON,J.SCHMIEDEL,T.KNOECHEL REVDAT 6 01-NOV-23 3C08 1 REMARK REVDAT 5 25-DEC-19 3C08 1 SOURCE REMARK REVDAT 4 25-OCT-17 3C08 1 REMARK REVDAT 3 13-JUL-11 3C08 1 VERSN REVDAT 2 24-FEB-09 3C08 1 VERSN REVDAT 1 15-APR-08 3C08 0 JRNL AUTH J.SCHMIEDEL,A.BLAUKAT,S.LI,T.KNOCHEL,K.M.FERGUSON JRNL TITL MATUZUMAB BINDING TO EGFR PREVENTS THE CONFORMATIONAL JRNL TITL 2 REARRANGEMENT REQUIRED FOR DIMERIZATION. JRNL REF CANCER CELL V. 13 365 2008 JRNL REFN ISSN 1535-6108 JRNL PMID 18394559 JRNL DOI 10.1016/J.CCR.2008.02.019 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.362 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3233 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4430 ; 1.329 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ;18.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.502 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;17.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2425 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1264 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2155 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.275 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2124 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3397 ; 1.297 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1109 ; 1.190 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 1.885 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 52.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.618 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM 6.0 REMARK 200 STARTING MODEL: PDB ID 1L7I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.33750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.68850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.33750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.68850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP L 1 REMARK 465 ILE L 2 REMARK 465 GLN L 3 REMARK 465 SER L 26 REMARK 465 SER L 27 REMARK 465 GLU L 212 REMARK 465 GLY H 26 REMARK 465 TYR H 27 REMARK 465 THR H 28 REMARK 465 PHE H 29 REMARK 465 THR H 30 REMARK 465 SER H 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER L 7 OG REMARK 470 ARG L 18 CG CD NE CZ NH1 NH2 REMARK 470 SER L 24 OG REMARK 470 SER L 28 OG REMARK 470 LYS L 38 CG CD CE NZ REMARK 470 ASP L 69 CG OD1 OD2 REMARK 470 GLU L 80 CG CD OE1 OE2 REMARK 470 SER L 92 OG REMARK 470 HIS L 93 CG ND1 CD2 CE1 NE2 REMARK 470 ILE L 94 CG1 CG2 CD1 REMARK 470 LYS L 102 CG CD CE NZ REMARK 470 LYS L 106 CG CD CE NZ REMARK 470 ASP L 121 CG OD1 OD2 REMARK 470 GLU L 142 CG CD OE1 OE2 REMARK 470 LYS L 144 CG CD CE NZ REMARK 470 LEU L 153 CG CD1 CD2 REMARK 470 LYS L 168 CG CD CE NZ REMARK 470 LYS L 189 CG CD CE NZ REMARK 470 GLN L 198 CG CD OE1 NE2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 VAL H 2 CG1 CG2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 LYS H 23 CG CD CE NZ REMARK 470 SER H 25 OG REMARK 470 GLN H 43 CG CD OE1 NE2 REMARK 470 ARG H 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 62 CG CD OE1 OE2 REMARK 470 LYS H 63 CG CD CE NZ REMARK 470 LYS H 65 CG CD CE NZ REMARK 470 SER H 66 OG REMARK 470 ARG H 87 CG CD NE CZ NH1 NH2 REMARK 470 ASP H 100 CG OD1 OD2 REMARK 470 TYR H 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS H 125 CG CD CE NZ REMARK 470 LYS H 209 CG CD CE NZ REMARK 470 ASP H 216 CG OD1 OD2 REMARK 470 GLU H 220 CG CD OE1 OE2 REMARK 470 LYS H 222 CG CD CE NZ REMARK 470 SER H 223 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 49 47.60 33.56 REMARK 500 THR L 50 -51.72 89.95 REMARK 500 ILE L 94 114.06 -164.02 REMARK 500 ASP L 150 50.60 39.66 REMARK 500 ASN L 151 -3.28 69.28 REMARK 500 ARG L 210 165.65 142.71 REMARK 500 ASN H 163 -114.72 53.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO L 39 GLY L 40 -93.76 REMARK 500 SER L 91 SER L 92 118.67 REMARK 500 PRO L 112 SER L 113 149.67 REMARK 500 GLN L 154 SER L 155 143.69 REMARK 500 SER L 155 GLY L 156 -85.62 REMARK 500 GLY L 156 ASN L 157 146.33 REMARK 500 ASN L 209 ARG L 210 131.99 REMARK 500 ARG L 210 GLY L 211 -147.88 REMARK 500 SER H 140 GLY H 141 -117.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 225 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE THE FAB FRAGMENT OF MATUZUMAB (FAB72000) IN REMARK 900 COMPLEX WITH DOMAIN III OF THE EXTRACELLULAR DBREF 3C08 L 1 212 PDB 3C08 3C08 1 212 DBREF 3C08 H 1 223 PDB 3C08 3C08 1 223 SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS SER ALA SER SEQRES 3 L 212 SER SER VAL THR TYR MET TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 212 GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP THR SER ASN SEQRES 5 L 212 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 212 SER GLY THR ASP TYR THR PHE THR ILE SER SER LEU GLN SEQRES 7 L 212 PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 L 212 SER HIS ILE PHE THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 9 L 212 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 212 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 212 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 212 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 212 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 212 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 212 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 212 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 212 ASN ARG GLY GLU SEQRES 1 H 223 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 223 TYR THR PHE THR SER HIS TRP MET HIS TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU PHE ASN SEQRES 5 H 223 PRO SER ASN GLY ARG THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 223 SER LYS ALA THR MET THR VAL ASP THR SER THR ASN THR SEQRES 7 H 223 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA SER ARG ASP TYR ASP TYR ASP SEQRES 9 H 223 GLY ARG TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 223 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 223 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 223 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 223 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 223 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 223 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 223 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 223 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 223 LYS SER HET SO4 L 214 5 HET SO4 H 225 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *99(H2 O) HELIX 1 1 GLN L 78 ILE L 82 5 5 HELIX 2 2 SER L 120 LYS L 125 1 6 HELIX 3 3 LYS L 182 LYS L 187 1 6 HELIX 4 4 GLU H 62 LYS H 65 5 4 HELIX 5 5 ARG H 87 THR H 91 5 5 HELIX 6 6 SER H 135 LYS H 137 5 3 HELIX 7 7 SER H 195 THR H 199 5 5 HELIX 8 8 LYS H 209 ASN H 212 5 4 SHEET 1 A 4 THR L 5 SER L 7 0 SHEET 2 A 4 VAL L 19 SER L 24 -1 O THR L 22 N SER L 7 SHEET 3 A 4 ASP L 69 ILE L 74 -1 O ILE L 74 N VAL L 19 SHEET 4 A 4 PHE L 61 SER L 66 -1 N SER L 64 O THR L 71 SHEET 1 B 6 SER L 10 ALA L 13 0 SHEET 2 B 6 THR L 101 ILE L 105 1 O LYS L 102 N LEU L 11 SHEET 3 B 6 ALA L 83 SER L 91 -1 N ALA L 83 O VAL L 103 SHEET 4 B 6 TYR L 31 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 B 6 LYS L 44 TYR L 48 -1 O LYS L 44 N GLN L 36 SHEET 6 B 6 ASN L 52 LEU L 53 -1 O ASN L 52 N TYR L 48 SHEET 1 C 4 SER L 10 ALA L 13 0 SHEET 2 C 4 THR L 101 ILE L 105 1 O LYS L 102 N LEU L 11 SHEET 3 C 4 ALA L 83 SER L 91 -1 N ALA L 83 O VAL L 103 SHEET 4 C 4 ILE L 94 PHE L 97 -1 O ILE L 94 N SER L 91 SHEET 1 D 4 SER L 113 PHE L 117 0 SHEET 2 D 4 THR L 128 PHE L 138 -1 O LEU L 134 N PHE L 115 SHEET 3 D 4 TYR L 172 SER L 181 -1 O TYR L 172 N PHE L 138 SHEET 4 D 4 SER L 158 VAL L 162 -1 N SER L 161 O SER L 175 SHEET 1 E 4 ALA L 152 LEU L 153 0 SHEET 2 E 4 LYS L 144 VAL L 149 -1 N VAL L 149 O ALA L 152 SHEET 3 E 4 VAL L 190 THR L 196 -1 O ALA L 192 N LYS L 148 SHEET 4 E 4 VAL L 204 ASN L 209 -1 O PHE L 208 N TYR L 191 SHEET 1 F 4 LEU H 4 GLN H 6 0 SHEET 2 F 4 VAL H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 F 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 G 6 GLU H 10 LYS H 12 0 SHEET 2 G 6 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 G 6 ALA H 92 TYR H 101 -1 N TYR H 94 O THR H 115 SHEET 4 G 6 MET H 34 ALA H 40 -1 N HIS H 35 O ALA H 97 SHEET 5 G 6 GLY H 44 PHE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 H 4 GLU H 10 LYS H 12 0 SHEET 2 H 4 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 H 4 ALA H 92 TYR H 101 -1 N TYR H 94 O THR H 115 SHEET 4 H 4 TYR H 107 TRP H 111 -1 O PHE H 108 N ASP H 100 SHEET 1 I 4 SER H 128 LEU H 132 0 SHEET 2 I 4 THR H 143 TYR H 153 -1 O LYS H 151 N SER H 128 SHEET 3 I 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 J 4 THR H 139 SER H 140 0 SHEET 2 J 4 THR H 143 TYR H 153 -1 O THR H 143 N SER H 140 SHEET 3 J 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 K 3 THR H 159 TRP H 162 0 SHEET 2 K 3 ILE H 203 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 K 3 THR H 213 LYS H 218 -1 O THR H 213 N HIS H 208 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.16 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 4 CYS H 148 CYS H 204 1555 1555 2.02 CISPEP 1 SER L 7 PRO L 8 0 -4.96 CISPEP 2 TYR L 139 PRO L 140 0 7.21 CISPEP 3 PHE H 154 PRO H 155 0 -7.28 CISPEP 4 GLU H 156 PRO H 157 0 -3.06 SITE 1 AC1 5 LYS H 217 LYS H 218 THR L 30 SER L 91 SITE 2 AC1 5 SER L 92 SITE 1 AC2 3 LYS H 12 LYS H 13 ALA H 16 CRYST1 56.821 61.377 102.675 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009739 0.00000