PDB Short entry for 3C2L
HEADER    TRANSFERASE/DNA                         25-JAN-08   3C2L              
TITLE     TERNARY COMPLEX OF DNA POLYMERASE BETA WITH A C:DAPCPP                
TITLE    2 MISMATCH IN THE ACTIVE SITE                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE BETA;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 2.7.7.7, 4.2.99.-;                                               
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: DNA (5'-                                                   
COMPND   8 D(*DCP*DCP*DGP*DAP*DCP*DCP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*          
COMPND   9 DGP*DC)-3');                                                         
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-                                                   
COMPND  14 D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3');                      
COMPND  15 CHAIN: P;                                                            
COMPND  16 ENGINEERED: YES;                                                     
COMPND  17 MOL_ID: 4;                                                           
COMPND  18 MOLECULE: DNA (5'-D(P*DGP*DTP*DCP*DGP*DG)-3');                       
COMPND  19 CHAIN: D;                                                            
COMPND  20 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 GENE: POLB;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 SYNTHETIC: YES;                                                      
SOURCE   8 MOL_ID: 3;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 MOL_ID: 4;                                                           
SOURCE  11 SYNTHETIC: YES                                                       
KEYWDS    NUCLEOTIDYL TRANSFERASE, DNA POLYMERASE, MISINCORPORATION,            
KEYWDS   2 DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA SYNTHESIS, DNA-         
KEYWDS   3 BINDING, DNA-DIRECTED DNA POLYMERASE, LYASE, MAGNESIUM,              
KEYWDS   4 METAL-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS,                      
KEYWDS   5 POLYMORPHISM, SODIUM, TRANSFERASE/DNA COMPLEX                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.K.BATRA,W.A.BEARD,D.D.SHOCK,L.C.PEDERSEN,S.H.WILSON                 
REVDAT   2   24-FEB-09 3C2L    1       VERSN                                    
REVDAT   1   20-MAY-08 3C2L    0                                                
JRNL        AUTH   V.K.BATRA,W.A.BEARD,D.D.SHOCK,L.C.PEDERSEN,                  
JRNL        AUTH 2 S.H.WILSON                                                   
JRNL        TITL   STRUCTURES OF DNA POLYMERASE BETA WITH ACTIVE-SITE           
JRNL        TITL 2 MISMATCHES SUGGEST A TRANSIENT ABASIC SITE                   
JRNL        TITL 3 INTERMEDIATE DURING MISINCORPORATION.                        
JRNL        REF    MOL.CELL                      V.  30   315 2008              
JRNL        REFN                   ISSN 1097-2765                               
JRNL        PMID   18471977                                                     
JRNL        DOI    10.1016/J.MOLCEL.2008.02.025                                 
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,             
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 23.14                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 442885.450                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 86.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 11355                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.224                           
REMARK   3   FREE R VALUE                     : 0.306                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1043                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.009                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.60                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.76                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 68.60                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 1351                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.4020                       
REMARK   3   BIN FREE R VALUE                    : 0.4970                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 9.00                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 133                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.043                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2612                                    
REMARK   3   NUCLEIC ACID ATOMS       : 629                                     
REMARK   3   HETEROGEN ATOMS          : 38                                      
REMARK   3   SOLVENT ATOMS            : 129                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 45.30                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 41.20                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.66000                                              
REMARK   3    B22 (A**2) : -0.40000                                             
REMARK   3    B33 (A**2) : -0.26000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 6.91000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.40                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.41                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.52                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.56                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.007                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.30                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 24.40                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.99                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.360 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.320 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 1.810 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.870 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.30                                                 
REMARK   3   BSOL        : 32.13                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : F2A.PARAM                                      
REMARK   3  PARAMETER FILE  2  : NULL                                           
REMARK   3  PARAMETER FILE  3  : NULL                                           
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  4   : F2A.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : DNTP.TOP                                       
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3C2L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-08.                  
REMARK 100 THE RCSB ID CODE IS RCSB046261.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 27-MAR-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU MICROMAX-007 HF             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : VIRAMAX                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU SATURN 92                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 13062                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.5                               
REMARK 200  DATA REDUNDANCY                : 3.600                              
REMARK 200  R MERGE                    (I) : 0.09600                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.1000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.69                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.51900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 2FMP                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 45.50                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE PH 7.5, 350 MM           
REMARK 280  SODIUM ACETATE, 18% PEG 3350, VAPOR DIFFUSION, SITTING DROP,        
REMARK 280  TEMPERATURE 291K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       39.14000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, D, A                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     SER A     2                                                      
REMARK 465     LYS A     3                                                      
REMARK 465     ARG A     4                                                      
REMARK 465     LYS A     5                                                      
REMARK 465     ALA A     6                                                      
REMARK 465     PRO A     7                                                      
REMARK 465     GLN A     8                                                      
REMARK 465     GLU A     9                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER;            
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     VAL A 303    CG1  CG2                                            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    TYR A   173     O    HOH A   407              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG D   1   P      DG D   1   OP3    -0.083                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ALA A  47        5.63    -65.05                                   
REMARK 500    ALA A  78      -86.21    -59.20                                   
REMARK 500    ASP A  91      114.71    -39.44                                   
REMARK 500    PRO A 108      -71.61    -46.20                                   
REMARK 500    LYS A 120       17.16   -141.12                                   
REMARK 500    ASP A 170      125.78   -170.93                                   
REMARK 500    SER A 171        2.88    -67.98                                   
REMARK 500    CYS A 178     -147.72   -129.28                                   
REMARK 500    GLU A 203      -73.85    -56.82                                   
REMARK 500    SER A 204      -43.12     58.13                                   
REMARK 500    LYS A 206      104.47     61.00                                   
REMARK 500    LYS A 209       33.16     85.29                                   
REMARK 500    HIS A 222       35.81     84.49                                   
REMARK 500    SER A 229      141.50   -172.76                                   
REMARK 500    LYS A 244      -79.43    -35.54                                   
REMARK 500    ASN A 245      -94.15   -140.83                                   
REMARK 500    GLU A 247     -128.08    -89.11                                   
REMARK 500    ASP A 263       20.18    -78.19                                   
REMARK 500    TYR A 265      -71.64    -36.82                                   
REMARK 500    ARG A 283       21.14    -64.79                                   
REMARK 500    ALA A 307       82.34    -63.78                                   
REMARK 500    GLN A 324       70.43     47.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500     DG P   4         0.06    SIDE_CHAIN                              
REMARK 500    TYR A  49         0.07    SIDE_CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 433        DISTANCE =  7.47 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620  (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;              
REMARK 620  SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                            
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 355  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LYS A  60   O                                                      
REMARK 620 2 LEU A  62   O    99.2                                              
REMARK 620 3 HOH A 449   O    90.7 165.9                                        
REMARK 620 4  DC D   3   OP1 151.1  81.4  85.0                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NA A 354  NA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 THR A 101   O                                                      
REMARK 620 2 VAL A 103   O    82.5                                              
REMARK 620 3 ILE A 106   O    82.4  80.1                                        
REMARK 620 4 HOH A 377   O    78.1 103.4 159.5                                  
REMARK 620 5  DG P   9   OP1 168.7  97.1  86.4 112.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 339  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD1                                                    
REMARK 620 2 ASP A 192   OD2  85.1                                              
REMARK 620 3 F2A A 338   O2B 144.7  88.6                                        
REMARK 620 4 F2A A 338   O3G  86.6 152.4  83.3                                  
REMARK 620 5 F2A A 338   O1A 106.4  96.0 108.8 111.5                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 340  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A 190   OD2                                                    
REMARK 620 2 ASP A 192   OD1 101.5                                              
REMARK 620 3 ASP A 256   OD2  89.8 110.4                                        
REMARK 620 4 F2A A 338   O1A  95.0  86.4 161.3                                  
REMARK 620 5 HOH A 369   O    79.3 157.6  92.0  71.3                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MN A 341  MN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH A 421   O                                                      
REMARK 620 2 HOH A 420   O    69.7                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 339                  
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 340                  
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 341                  
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN T 342                  
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 354                  
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 355                  
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F2A A 338                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2FMP   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE BETA WITH A TERMINATED GAPPED DNA SUBSTRATE           
REMARK 900 AND DDCTP WITH SODIUM IN THE CATALYTIC SITE                          
REMARK 900 RELATED ID: 3C2K   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE BETA WITH A GAPPED DNA SUBSTRATE AND DUMPNPP          
REMARK 900 WITH MANGANESE IN THE ACTIVE SITE                                    
REMARK 900 RELATED ID: 3C2M   RELATED DB: PDB                                   
REMARK 900 TERNARY COMPLEX OF DNA POLYMERASE BETA WITH A C:DAPCPP               
REMARK 900 MISMATCH IN THE ACTIVE SITE                                          
DBREF  3C2L A    1   335  UNP    P06746   DPOLB_HUMAN      1    335             
DBREF  3C2L T    1    16  PDB    3C2L     3C2L             1     16             
DBREF  3C2L P    1    10  PDB    3C2L     3C2L             1     10             
DBREF  3C2L D    1     5  PDB    3C2L     3C2L             1      5             
SEQRES   1 A  335  MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY          
SEQRES   2 A  335  GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU          
SEQRES   3 A  335  LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR          
SEQRES   4 A  335  ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS          
SEQRES   5 A  335  ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL          
SEQRES   6 A  335  GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA          
SEQRES   7 A  335  THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP          
SEQRES   8 A  335  ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER          
SEQRES   9 A  335  GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU          
SEQRES  10 A  335  GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP          
SEQRES  11 A  335  LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE          
SEQRES  12 A  335  GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU          
SEQRES  13 A  335  GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL          
SEQRES  14 A  335  ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG          
SEQRES  15 A  335  ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU          
SEQRES  16 A  335  THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO          
SEQRES  17 A  335  LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL          
SEQRES  18 A  335  HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS          
SEQRES  19 A  335  PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU          
SEQRES  20 A  335  LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE          
SEQRES  21 A  335  PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR          
SEQRES  22 A  335  GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA          
SEQRES  23 A  335  LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG          
SEQRES  24 A  335  PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO          
SEQRES  25 A  335  VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP          
SEQRES  26 A  335  LYS TYR ARG GLU PRO LYS ASP ARG SER GLU                      
SEQRES   1 T   16   DC  DC  DG  DA  DC  DC  DG  DC  DG  DC  DA  DT  DC          
SEQRES   2 T   16   DA  DG  DC                                                  
SEQRES   1 P   10   DG  DC  DT  DG  DA  DT  DG  DC  DG  DC                      
SEQRES   1 D    5   DG  DT  DC  DG  DG                                          
HET     MN  A 339       1                                                       
HET     MN  A 340       1                                                       
HET     MN  A 341       1                                                       
HET     MN  A 344       1                                                       
HET     NA  A 354       1                                                       
HET     NA  A 355       1                                                       
HET     MN  T 342       1                                                       
HET     MN  P 343       1                                                       
HET    F2A  A 338      30                                                       
HETNAM      MN MANGANESE (II) ION                                               
HETNAM      NA SODIUM ION                                                       
HETNAM     F2A 2'-DEOXY-5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 F2A  PHOSPHORYL]METHYL}PHOSPHORYL]ADENOSINE                          
FORMUL   5   MN    6(MN 2+)                                                     
FORMUL   9   NA    2(NA 1+)                                                     
FORMUL  13  F2A    C11 H18 N5 O11 P3                                            
FORMUL  14  HOH   *129(H2 O)                                                    
HELIX    1   1 ASN A   12  VAL A   29  1                                  18    
HELIX    2   2 ALA A   32  ALA A   47  1                                  16    
HELIX    3   3 SER A   55  LYS A   61  1                                   7    
HELIX    4   4 GLY A   66  THR A   79  1                                  14    
HELIX    5   5 LEU A   82  ASP A   91  1                                  10    
HELIX    6   6 ASP A   91  THR A  101  1                                  11    
HELIX    7   7 GLY A  107  GLU A  117  1                                  11    
HELIX    8   8 THR A  121  ASN A  128  1                                   8    
HELIX    9   9 GLU A  129  LEU A  132  5                                   4    
HELIX   10  10 ASN A  133  TYR A  142  1                                  10    
HELIX   11  11 TYR A  142  LYS A  148  1                                   7    
HELIX   12  12 ARG A  152  LYS A  168  1                                  17    
HELIX   13  13 GLY A  179  ARG A  182  5                                   4    
HELIX   14  14 LYS A  209  VAL A  221  1                                  13    
HELIX   15  15 PRO A  261  ASP A  263  5                                   3    
HELIX   16  16 GLN A  264  PHE A  272  1                                   9    
HELIX   17  17 SER A  275  LYS A  289  1                                  15    
HELIX   18  18 SER A  315  ILE A  323  1                                   9    
HELIX   19  19 GLU A  329  ARG A  333  5                                   5    
SHEET    1   A 2 ILE A 150  PRO A 151  0                                        
SHEET    2   A 2 SER A 187  SER A 188 -1  O  SER A 188   N  ILE A 150           
SHEET    1   B 5 THR A 176  CYS A 178  0                                        
SHEET    2   B 5 MET A 191  LEU A 195 -1  O  ASP A 192   N  CYS A 178           
SHEET    3   B 5 ARG A 253  LEU A 259  1  O  ASP A 256   N  VAL A 193           
SHEET    4   B 5 LYS A 234  CYS A 239 -1  N  CYS A 239   O  ARG A 253           
SHEET    5   B 5 ILE A 224  LYS A 230 -1  N  ASP A 226   O  VAL A 238           
SHEET    1   C 2 PHE A 291  ILE A 293  0                                        
SHEET    2   C 2 ILE A 298  PRO A 300 -1  O  ARG A 299   N  THR A 292           
LINK         O   LYS A  60                NA    NA A 355     1555   1555  2.41  
LINK         O   LEU A  62                NA    NA A 355     1555   1555  2.40  
LINK         O   THR A 101                NA    NA A 354     1555   1555  2.44  
LINK         O   VAL A 103                NA    NA A 354     1555   1555  2.56  
LINK         O   ILE A 106                NA    NA A 354     1555   1555  2.89  
LINK         OD1 ASP A 190                MN    MN A 339     1555   1555  2.05  
LINK         OD2 ASP A 190                MN    MN A 340     1555   1555  2.31  
LINK         OD1 ASP A 192                MN    MN A 340     1555   1555  1.86  
LINK         OD2 ASP A 192                MN    MN A 339     1555   1555  2.21  
LINK         OD2 ASP A 256                MN    MN A 340     1555   1555  2.24  
LINK        MN    MN A 339                 O2B F2A A 338     1555   1555  2.01  
LINK        MN    MN A 339                 O3G F2A A 338     1555   1555  2.14  
LINK        MN    MN A 339                 O1A F2A A 338     1555   1555  2.26  
LINK        MN    MN A 340                 O1A F2A A 338     1555   1555  2.19  
LINK        MN    MN A 340                 O   HOH A 369     1555   1555  2.12  
LINK        MN    MN A 341                 O   HOH A 421     1555   1555  2.12  
LINK        MN    MN A 341                 O   HOH A 420     1555   1555  2.34  
LINK        NA    NA A 354                 O   HOH A 377     1555   1555  2.37  
LINK        NA    NA A 355                 O   HOH A 449     1555   1555  2.48  
LINK        MN    MN T 342                 O   HOH T 356     1555   1555  2.44  
LINK         OP1  DG P   9                NA    NA A 354     1555   1555  2.28  
LINK         OP1  DC D   3                NA    NA A 355     1555   1555  2.88  
CISPEP   1 GLY A  274    SER A  275          0         1.01                     
SITE     1 AC1  2 ASP A 190  ASP A 192                                          
SITE     1 AC2  3 ASP A 190  ASP A 192  ASP A 256                               
SITE     1 AC3  2 ASP A 124  ASP A 318                                          
SITE     1 AC4  1  DG T   3                                                     
SITE     1 AC5  3 THR A 101  ILE A 106   DG P   9                               
SITE     1 AC6  4 LYS A  60  LYS A  61  LEU A  62   DC D   3                    
SITE     1 AC7 16 GLY A 179  SER A 180  ARG A 183  SER A 188                    
SITE     2 AC7 16 GLY A 189  ASP A 190  ASP A 192  TYR A 271                    
SITE     3 AC7 16 PHE A 272  THR A 273  GLY A 274  ASP A 276                    
SITE     4 AC7 16 ASN A 279  LYS A 280   DC P  10   DC T   6                    
CRYST1   54.470   78.280   54.890  90.00 113.18  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.018359  0.000000  0.007861        0.00000                         
SCALE2      0.000000  0.012775  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019818        0.00000