PDB Short entry for 3C3B
HEADER    TRANSFERASE                             28-JAN-08   3C3B              
TITLE     CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLYCERATE KINASE BOUND TO D-CDP     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PHOSPHOGLYCERATE KINASE 1;                                 
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: 3-PHOSPHOGLYCERATE KINASE, PRIMER RECOGNITION PROTEIN 2, PRP
COMPND   5 2, CELL MIGRATION-INDUCING GENE 10 PROTEIN;                          
COMPND   6 EC: 2.7.2.3;                                                         
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 GENE: PGK1;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)/PDIA17;                         
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET28A                                    
KEYWDS    PROTEIN-NUCLEOTIDE COMPLEX, D-ENANTIOMER OF CDP, KINASE, ACETYLATION, 
KEYWDS   2 ATP-BINDING, CYTOPLASM, DISEASE MUTATION, GLYCOLYSIS, HEREDITARY     
KEYWDS   3 HEMOLYTIC ANEMIA, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, POLYMORPHISM,  
KEYWDS   4 TRANSFERASE                                                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.T.AROLD,C.GONDEAU,C.LIONNE,L.CHALOIN                                
REVDAT   3   01-NOV-23 3C3B    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 3C3B    1       VERSN                                    
REVDAT   1   01-JUL-08 3C3B    0                                                
JRNL        AUTH   C.GONDEAU,L.CHALOIN,P.LALLEMAND,B.ROY,C.PERIGAUD,T.BARMAN,   
JRNL        AUTH 2 A.VARGA,M.VAS,C.LIONNE,S.T.AROLD                             
JRNL        TITL   MOLECULAR BASIS FOR THE LACK OF ENANTIOSELECTIVITY OF HUMAN  
JRNL        TITL 2 3-PHOSPHOGLYCERATE KINASE                                    
JRNL        REF    NUCLEIC ACIDS RES.            V.  36  3620 2008              
JRNL        REFN                   ISSN 0305-1048                               
JRNL        PMID   18463139                                                     
JRNL        DOI    10.1093/NAR/GKN212                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.4.0062                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.94                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 87.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 54697                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.171                           
REMARK   3   R VALUE            (WORKING SET) : 0.169                           
REMARK   3   FREE R VALUE                     : 0.241                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 3.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1703                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.80                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.85                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2084                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 44.82                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2440                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 58                           
REMARK   3   BIN FREE R VALUE                    : 0.3300                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 6004                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 35                                      
REMARK   3   SOLVENT ATOMS            : 738                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 21.60                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 23.44                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.01000                                             
REMARK   3    B22 (A**2) : -0.03000                                             
REMARK   3    B33 (A**2) : 0.03000                                              
REMARK   3    B12 (A**2) : 0.01000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.01000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.160         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.162         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.104         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.324         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.959                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.912                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  6129 ; 0.025 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  8258 ; 2.000 ; 1.989       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   796 ; 6.886 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   229 ;42.316 ;25.633       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  1128 ;15.865 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    22 ;17.481 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   948 ; 0.152 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4447 ; 0.011 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  3955 ; 1.753 ; 2.000       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  6323 ; 2.803 ; 3.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2174 ; 5.595 ; 6.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1935 ; 8.451 ;10.000       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3C3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000046287.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 26-MAR-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID29                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.933                              
REMARK 200  MONOCHROMATOR                  : LIQUID NITROGEN COOLED CHANNEL     
REMARK 200                                   -CUT SILICON MONOCHROMATOR         
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 54699                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.960                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 87.2                               
REMARK 200  DATA REDUNDANCY                : 1.900                              
REMARK 200  R MERGE                    (I) : 0.04200                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.90                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 50.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 1.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.37000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: 1VJC                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 38.61                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M NAKPO4, PH 8.3, VAPOR DIFFUSION,    
REMARK 280  HANGING DROP, TEMPERATURE 291K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1                              
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    -3                                                      
REMARK 465     SER A    -2                                                      
REMARK 465     HIS A    -1                                                      
REMARK 465     MET A     0                                                      
REMARK 465     GLY A   373                                                      
REMARK 465     ASP A   374                                                      
REMARK 465     THR A   375                                                      
REMARK 465     ALA A   376                                                      
REMARK 465     THR A   377                                                      
REMARK 465     CYS A   378                                                      
REMARK 465     CYS A   379                                                      
REMARK 465     ALA A   380                                                      
REMARK 465     LYS A   381                                                      
REMARK 465     TRP A   382                                                      
REMARK 465     ASN A   383                                                      
REMARK 465     THR A   384                                                      
REMARK 465     GLU A   385                                                      
REMARK 465     GLY B    -3                                                      
REMARK 465     SER B    -2                                                      
REMARK 465     HIS B    -1                                                      
REMARK 465     MET B     0                                                      
REMARK 465     SER B     1                                                      
REMARK 465     GLY B   100                                                      
REMARK 465     PRO B   101                                                      
REMARK 465     GLU B   102                                                      
REMARK 465     VAL B   103                                                      
REMARK 465     GLY B   373                                                      
REMARK 465     ASP B   374                                                      
REMARK 465     THR B   375                                                      
REMARK 465     ALA B   376                                                      
REMARK 465     THR B   377                                                      
REMARK 465     CYS B   378                                                      
REMARK 465     CYS B   379                                                      
REMARK 465     ALA B   380                                                      
REMARK 465     LYS B   381                                                      
REMARK 465     TRP B   382                                                      
REMARK 465     ASN B   383                                                      
REMARK 465     THR B   384                                                      
REMARK 465     GLU B   385                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ALA A 134    CB                                                  
REMARK 470     LYS B 105    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A   710     O    HOH A   763              1.69            
REMARK 500   O    ALA A   112     O    HOH A   731              2.06            
REMARK 500   O    HOH B   706     O    HOH B   777              2.11            
REMARK 500   CB   LYS B   321     O    HOH B   773              2.12            
REMARK 500   OD1  ASP B   267     O    HOH B   761              2.16            
REMARK 500   O    LYS B   274     O    HOH B   673              2.17            
REMARK 500   O    HOH B   710     O    HOH B   755              2.18            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    VAL A  19   CB  -  CA  -  C   ANGL. DEV. = -13.8 DEGREES          
REMARK 500    VAL A  19   CA  -  CB  -  CG2 ANGL. DEV. =  10.3 DEGREES          
REMARK 500    LYS A  96   CD  -  CE  -  NZ  ANGL. DEV. =  15.0 DEGREES          
REMARK 500    ASP B   9   CB  -  CG  -  OD2 ANGL. DEV. =   6.0 DEGREES          
REMARK 500    ASP B  12   CB  -  CG  -  OD1 ANGL. DEV. =   5.5 DEGREES          
REMARK 500    ILE B 416   CG1 -  CB  -  CG2 ANGL. DEV. =  14.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A 109       66.69   -156.26                                   
REMARK 500    ASN A 120      107.64    -36.35                                   
REMARK 500    ALA A 164       68.34   -100.14                                   
REMARK 500    ASN B  30     -155.03     68.43                                   
REMARK 500    ASN B  31       46.03    -93.09                                   
REMARK 500    LYS B 105       -6.95     58.95                                   
REMARK 500    ALA B 134        4.09    -67.49                                   
REMARK 500    ASN B 179       78.06   -102.58                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 LYS B  105     ALA B  106                  139.73                    
REMARK 500 ASN B  415     ILE B  416                  147.31                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 417                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 417                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDP B 418                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2ZGV   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLYCERATE KINASE BOUND TO D-ADP    
REMARK 900 RELATED ID: 3C39   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLYCERATE KINASE BOUND TO 3-       
REMARK 900 PHOSPHOGLYCERATE                                                     
REMARK 900 RELATED ID: 3C3A   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLYCERATE KINASE BOUND TO 3-       
REMARK 900 PHOSPHOGLYCERATE AND L-ADP                                           
REMARK 900 RELATED ID: 3C3C   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLYCERATE KINASE BOUND TO 3-       
REMARK 900 PHOSPHOGLYCERATE AND L-CDP                                           
DBREF  3C3B A    0   416  UNP    P00558   PGK1_HUMAN       1    417             
DBREF  3C3B B    0   416  UNP    P00558   PGK1_HUMAN       1    417             
SEQADV 3C3B GLY A   -3  UNP  P00558              EXPRESSION TAG                 
SEQADV 3C3B SER A   -2  UNP  P00558              EXPRESSION TAG                 
SEQADV 3C3B HIS A   -1  UNP  P00558              EXPRESSION TAG                 
SEQADV 3C3B GLY B   -3  UNP  P00558              EXPRESSION TAG                 
SEQADV 3C3B SER B   -2  UNP  P00558              EXPRESSION TAG                 
SEQADV 3C3B HIS B   -1  UNP  P00558              EXPRESSION TAG                 
SEQRES   1 A  420  GLY SER HIS MET SER LEU SER ASN LYS LEU THR LEU ASP          
SEQRES   2 A  420  LYS LEU ASP VAL LYS GLY LYS ARG VAL VAL MET ARG VAL          
SEQRES   3 A  420  ASP PHE ASN VAL PRO MET LYS ASN ASN GLN ILE THR ASN          
SEQRES   4 A  420  ASN GLN ARG ILE LYS ALA ALA VAL PRO SER ILE LYS PHE          
SEQRES   5 A  420  CYS LEU ASP ASN GLY ALA LYS SER VAL VAL LEU MET SER          
SEQRES   6 A  420  HIS LEU GLY ARG PRO ASP GLY VAL PRO MET PRO ASP LYS          
SEQRES   7 A  420  TYR SER LEU GLU PRO VAL ALA VAL GLU LEU LYS SER LEU          
SEQRES   8 A  420  LEU GLY LYS ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY          
SEQRES   9 A  420  PRO GLU VAL GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY          
SEQRES  10 A  420  SER VAL ILE LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU          
SEQRES  11 A  420  GLU GLU GLY LYS GLY LYS ASP ALA SER GLY ASN LYS VAL          
SEQRES  12 A  420  LYS ALA GLU PRO ALA LYS ILE GLU ALA PHE ARG ALA SER          
SEQRES  13 A  420  LEU SER LYS LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE          
SEQRES  14 A  420  GLY THR ALA HIS ARG ALA HIS SER SER MET VAL GLY VAL          
SEQRES  15 A  420  ASN LEU PRO GLN LYS ALA GLY GLY PHE LEU MET LYS LYS          
SEQRES  16 A  420  GLU LEU ASN TYR PHE ALA LYS ALA LEU GLU SER PRO GLU          
SEQRES  17 A  420  ARG PRO PHE LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA          
SEQRES  18 A  420  ASP LYS ILE GLN LEU ILE ASN ASN MET LEU ASP LYS VAL          
SEQRES  19 A  420  ASN GLU MET ILE ILE GLY GLY GLY MET ALA PHE THR PHE          
SEQRES  20 A  420  LEU LYS VAL LEU ASN ASN MET GLU ILE GLY THR SER LEU          
SEQRES  21 A  420  PHE ASP GLU GLU GLY ALA LYS ILE VAL LYS ASP LEU MET          
SEQRES  22 A  420  SER LYS ALA GLU LYS ASN GLY VAL LYS ILE THR LEU PRO          
SEQRES  23 A  420  VAL ASP PHE VAL THR ALA ASP LYS PHE ASP GLU ASN ALA          
SEQRES  24 A  420  LYS THR GLY GLN ALA THR VAL ALA SER GLY ILE PRO ALA          
SEQRES  25 A  420  GLY TRP MET GLY LEU ASP CYS GLY PRO GLU SER SER LYS          
SEQRES  26 A  420  LYS TYR ALA GLU ALA VAL THR ARG ALA LYS GLN ILE VAL          
SEQRES  27 A  420  TRP ASN GLY PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE          
SEQRES  28 A  420  ALA ARG GLY THR LYS ALA LEU MET ASP GLU VAL VAL LYS          
SEQRES  29 A  420  ALA THR SER ARG GLY CYS ILE THR ILE ILE GLY GLY GLY          
SEQRES  30 A  420  ASP THR ALA THR CYS CYS ALA LYS TRP ASN THR GLU ASP          
SEQRES  31 A  420  LYS VAL SER HIS VAL SER THR GLY GLY GLY ALA SER LEU          
SEQRES  32 A  420  GLU LEU LEU GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA          
SEQRES  33 A  420  LEU SER ASN ILE                                              
SEQRES   1 B  420  GLY SER HIS MET SER LEU SER ASN LYS LEU THR LEU ASP          
SEQRES   2 B  420  LYS LEU ASP VAL LYS GLY LYS ARG VAL VAL MET ARG VAL          
SEQRES   3 B  420  ASP PHE ASN VAL PRO MET LYS ASN ASN GLN ILE THR ASN          
SEQRES   4 B  420  ASN GLN ARG ILE LYS ALA ALA VAL PRO SER ILE LYS PHE          
SEQRES   5 B  420  CYS LEU ASP ASN GLY ALA LYS SER VAL VAL LEU MET SER          
SEQRES   6 B  420  HIS LEU GLY ARG PRO ASP GLY VAL PRO MET PRO ASP LYS          
SEQRES   7 B  420  TYR SER LEU GLU PRO VAL ALA VAL GLU LEU LYS SER LEU          
SEQRES   8 B  420  LEU GLY LYS ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY          
SEQRES   9 B  420  PRO GLU VAL GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY          
SEQRES  10 B  420  SER VAL ILE LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU          
SEQRES  11 B  420  GLU GLU GLY LYS GLY LYS ASP ALA SER GLY ASN LYS VAL          
SEQRES  12 B  420  LYS ALA GLU PRO ALA LYS ILE GLU ALA PHE ARG ALA SER          
SEQRES  13 B  420  LEU SER LYS LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE          
SEQRES  14 B  420  GLY THR ALA HIS ARG ALA HIS SER SER MET VAL GLY VAL          
SEQRES  15 B  420  ASN LEU PRO GLN LYS ALA GLY GLY PHE LEU MET LYS LYS          
SEQRES  16 B  420  GLU LEU ASN TYR PHE ALA LYS ALA LEU GLU SER PRO GLU          
SEQRES  17 B  420  ARG PRO PHE LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA          
SEQRES  18 B  420  ASP LYS ILE GLN LEU ILE ASN ASN MET LEU ASP LYS VAL          
SEQRES  19 B  420  ASN GLU MET ILE ILE GLY GLY GLY MET ALA PHE THR PHE          
SEQRES  20 B  420  LEU LYS VAL LEU ASN ASN MET GLU ILE GLY THR SER LEU          
SEQRES  21 B  420  PHE ASP GLU GLU GLY ALA LYS ILE VAL LYS ASP LEU MET          
SEQRES  22 B  420  SER LYS ALA GLU LYS ASN GLY VAL LYS ILE THR LEU PRO          
SEQRES  23 B  420  VAL ASP PHE VAL THR ALA ASP LYS PHE ASP GLU ASN ALA          
SEQRES  24 B  420  LYS THR GLY GLN ALA THR VAL ALA SER GLY ILE PRO ALA          
SEQRES  25 B  420  GLY TRP MET GLY LEU ASP CYS GLY PRO GLU SER SER LYS          
SEQRES  26 B  420  LYS TYR ALA GLU ALA VAL THR ARG ALA LYS GLN ILE VAL          
SEQRES  27 B  420  TRP ASN GLY PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE          
SEQRES  28 B  420  ALA ARG GLY THR LYS ALA LEU MET ASP GLU VAL VAL LYS          
SEQRES  29 B  420  ALA THR SER ARG GLY CYS ILE THR ILE ILE GLY GLY GLY          
SEQRES  30 B  420  ASP THR ALA THR CYS CYS ALA LYS TRP ASN THR GLU ASP          
SEQRES  31 B  420  LYS VAL SER HIS VAL SER THR GLY GLY GLY ALA SER LEU          
SEQRES  32 B  420  GLU LEU LEU GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA          
SEQRES  33 B  420  LEU SER ASN ILE                                              
HET    PO4  A 417       5                                                       
HET    PO4  B 417       5                                                       
HET    CDP  B 418      25                                                       
HETNAM     PO4 PHOSPHATE ION                                                    
HETNAM     CDP CYTIDINE-5'-DIPHOSPHATE                                          
FORMUL   3  PO4    2(O4 P 3-)                                                   
FORMUL   5  CDP    C9 H15 N3 O11 P2                                             
FORMUL   6  HOH   *738(H2 O)                                                    
HELIX    1   1 THR A    7  LEU A   11  5                                   5    
HELIX    2   2 ASN A   36  ASN A   52  1                                  17    
HELIX    3   3 LEU A   77  GLY A   89  1                                  13    
HELIX    4   4 GLY A  100  ASN A  109  1                                  10    
HELIX    5   5 ASN A  120  HIS A  124  5                                   5    
HELIX    6   6 GLU A  142  LYS A  155  1                                  14    
HELIX    7   7 ALA A  164  ALA A  168  5                                   5    
HELIX    8   8 HIS A  172  GLY A  177  1                                   6    
HELIX    9   9 GLY A  186  SER A  202  1                                  17    
HELIX   10  10 VAL A  216  ASP A  218  5                                   3    
HELIX   11  11 LYS A  219  ASP A  228  1                                  10    
HELIX   12  12 MET A  239  ASN A  249  1                                  11    
HELIX   13  13 ASP A  258  LYS A  263  1                                   6    
HELIX   14  14 ILE A  264  ASN A  275  1                                  12    
HELIX   15  15 GLY A  316  ALA A  330  1                                  15    
HELIX   16  16 TRP A  344  PHE A  347  5                                   4    
HELIX   17  17 ALA A  348  ARG A  364  1                                  17    
HELIX   18  18 GLY A  395  LEU A  402  1                                   8    
HELIX   19  19 LEU A  407  ALA A  412  1                                   6    
HELIX   20  20 THR B    7  LEU B   11  5                                   5    
HELIX   21  21 ASN B   36  ALA B   41  1                                   6    
HELIX   22  22 ALA B   42  ASN B   52  1                                  11    
HELIX   23  23 LEU B   77  GLY B   89  1                                  13    
HELIX   24  24 ASN B  120  HIS B  124  5                                   5    
HELIX   25  25 GLU B  142  LYS B  155  1                                  14    
HELIX   26  26 ALA B  164  ALA B  168  5                                   5    
HELIX   27  27 HIS B  172  GLY B  177  1                                   6    
HELIX   28  28 GLY B  186  SER B  202  1                                  17    
HELIX   29  29 LYS B  215  ASP B  218  5                                   4    
HELIX   30  30 LYS B  219  LEU B  227  1                                   9    
HELIX   31  31 MET B  239  ASN B  249  1                                  11    
HELIX   32  32 ASP B  258  LYS B  263  1                                   6    
HELIX   33  33 ILE B  264  ASN B  275  1                                  12    
HELIX   34  34 GLY B  316  ALA B  330  1                                  15    
HELIX   35  35 TRP B  344  PHE B  347  5                                   4    
HELIX   36  36 ALA B  348  ARG B  364  1                                  17    
HELIX   37  37 GLY B  395  GLU B  403  1                                   9    
HELIX   38  38 LEU B  407  ALA B  412  1                                   6    
SHEET    1   A 6 LEU A  93  LEU A  95  0                                        
SHEET    2   A 6 SER A 114  LEU A 118  1  O  VAL A 115   N  LEU A  93           
SHEET    3   A 6 SER A  56  MET A  60  1  N  LEU A  59   O  ILE A 116           
SHEET    4   A 6 ARG A  17  ARG A  21  1  N  MET A  20   O  VAL A  58           
SHEET    5   A 6 VAL A 159  ASN A 162  1  O  VAL A 161   N  VAL A  19           
SHEET    6   A 6 LYS A 183  GLY A 185  1  O  ALA A 184   N  ASN A 162           
SHEET    1   B 2 MET A  28  LYS A  29  0                                        
SHEET    2   B 2 GLN A  32  ILE A  33 -1  O  GLN A  32   N  LYS A  29           
SHEET    1   C 2 LYS A 130  LYS A 132  0                                        
SHEET    2   C 2 LYS A 138  LYS A 140 -1  O  VAL A 139   N  GLY A 131           
SHEET    1   D 6 LYS A 278  THR A 280  0                                        
SHEET    2   D 6 GLU A 232  GLY A 236  1  N  MET A 233   O  THR A 280           
SHEET    3   D 6 PHE A 207  GLY A 212  1  N  ALA A 209   O  GLU A 232           
SHEET    4   D 6 GLN A 332  ASN A 336  1  O  ASN A 336   N  ILE A 210           
SHEET    5   D 6 ILE A 367  ILE A 370  1  O  ILE A 369   N  ILE A 333           
SHEET    6   D 6 HIS A 390  VAL A 391  1  O  HIS A 390   N  ILE A 370           
SHEET    1   E 3 THR A 297  THR A 301  0                                        
SHEET    2   E 3 ASP A 284  ALA A 288 -1  N  PHE A 285   O  ALA A 300           
SHEET    3   E 3 MET A 311  CYS A 315 -1  O  LEU A 313   N  VAL A 286           
SHEET    1   F 6 LEU B  93  LEU B  95  0                                        
SHEET    2   F 6 SER B 114  LEU B 118  1  O  LEU B 117   N  LEU B  93           
SHEET    3   F 6 SER B  56  MET B  60  1  N  LEU B  59   O  ILE B 116           
SHEET    4   F 6 ARG B  17  ARG B  21  1  N  MET B  20   O  VAL B  58           
SHEET    5   F 6 VAL B 159  ASN B 162  1  O  VAL B 161   N  ARG B  21           
SHEET    6   F 6 LYS B 183  GLY B 185  1  O  ALA B 184   N  TYR B 160           
SHEET    1   G 2 LYS B 130  LYS B 132  0                                        
SHEET    2   G 2 LYS B 138  LYS B 140 -1  O  VAL B 139   N  GLY B 131           
SHEET    1   H 6 LYS B 278  THR B 280  0                                        
SHEET    2   H 6 GLU B 232  GLY B 236  1  N  MET B 233   O  THR B 280           
SHEET    3   H 6 PHE B 207  GLY B 212  1  N  LEU B 211   O  ILE B 234           
SHEET    4   H 6 GLN B 332  ASN B 336  1  O  GLN B 332   N  LEU B 208           
SHEET    5   H 6 ILE B 367  ILE B 370  1  O  ILE B 369   N  TRP B 335           
SHEET    6   H 6 HIS B 390  VAL B 391  1  O  HIS B 390   N  ILE B 370           
SHEET    1   I 3 THR B 297  THR B 301  0                                        
SHEET    2   I 3 ASP B 284  ALA B 288 -1  N  PHE B 285   O  ALA B 300           
SHEET    3   I 3 MET B 311  CYS B 315 -1  O  LEU B 313   N  VAL B 286           
SSBOND   1 CYS B   98    CYS B  107                          1555   1555  2.01  
CISPEP   1 ARG A  205    PRO A  206          0         3.86                     
CISPEP   2 ARG B  205    PRO B  206          0         2.02                     
CISPEP   3 GLY B  371    GLY B  372          0        13.38                     
SITE     1 AC1  5 ASN B  25  HIS B  62  ARG B  65  ARG B 122                    
SITE     2 AC1  5 ARG B 170                                                     
SITE     1 AC2  5 ASN A  25  HIS A  62  ARG A  65  ARG A 122                    
SITE     2 AC2  5 ARG A 170                                                     
SITE     1 AC3  8 GLY B 213  ALA B 214  LYS B 219  GLY B 237                    
SITE     2 AC3  8 GLY B 238  LEU B 256  PHE B 291  PRO B 338                    
CRYST1   35.579   55.588   93.805  78.92  84.32  82.95 P 1           2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.028106 -0.003476 -0.002201        0.00000                         
SCALE2      0.000000  0.018127 -0.003362        0.00000                         
SCALE3      0.000000  0.000000  0.010896        0.00000