PDB Short entry for 3C5R HEADER PROTEIN BINDING 01-FEB-08 3C5R TITLE CRYSTAL STRUCTURE OF THE BARD1 ANKYRIN REPEAT DOMAIN AND ITS TITLE 2 FUNCTIONAL CONSEQUENCES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BARD1 ANKYRIN REPEAT DOMAIN (UNP RESIDUES 425-555); COMPND 5 SYNONYM: BARD-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151D KEYWDS BARD1, ANKYRIN REPEAT, HELIX, EXTENDED LOOP, FOUR REPEAT, PROTEIN, KEYWDS 2 ANK REPEAT, DISEASE MUTATION, METAL-BINDING, NUCLEUS, ZINC-FINGER, KEYWDS 3 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.FOX III,I.LE TRONG,R.E.STENKAMP,R.E.KLEVIT REVDAT 5 30-AUG-23 3C5R 1 SEQADV REVDAT 4 13-JUL-11 3C5R 1 VERSN REVDAT 3 24-FEB-09 3C5R 1 VERSN REVDAT 2 05-AUG-08 3C5R 1 JRNL REVDAT 1 13-MAY-08 3C5R 0 JRNL AUTH D.FOX,I.LE TRONG,P.RAJAGOPAL,P.S.BRZOVIC,R.E.STENKAMP, JRNL AUTH 2 R.E.KLEVIT JRNL TITL CRYSTAL STRUCTURE OF THE BARD1 ANKYRIN REPEAT DOMAIN AND ITS JRNL TITL 2 FUNCTIONAL CONSEQUENCES. JRNL REF J.BIOL.CHEM. V. 283 21179 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18480049 JRNL DOI 10.1074/JBC.M802333200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 16373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.65000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1987 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2708 ; 1.227 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 5.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;36.384 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;14.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1506 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 948 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1355 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.269 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 0.444 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2012 ; 0.728 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 782 ; 1.246 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 696 ; 1.856 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 425 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0115 27.2146 12.8623 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: -0.0355 REMARK 3 T33: -0.0357 T12: -0.0715 REMARK 3 T13: 0.0656 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.7408 L22: 3.7275 REMARK 3 L33: 6.0590 L12: -0.5100 REMARK 3 L13: -0.3818 L23: -2.1183 REMARK 3 S TENSOR REMARK 3 S11: 0.1952 S12: 0.0371 S13: 0.1789 REMARK 3 S21: -0.1515 S22: -0.1732 S23: -0.4279 REMARK 3 S31: -0.8641 S32: 0.3673 S33: -0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 439 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5867 28.5032 22.4151 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.0992 REMARK 3 T33: -0.1064 T12: 0.0006 REMARK 3 T13: 0.0398 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 6.6030 L22: 12.7984 REMARK 3 L33: 5.3649 L12: -3.1484 REMARK 3 L13: -2.1045 L23: 1.7069 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.0557 S13: 0.0103 REMARK 3 S21: 0.0941 S22: 0.0102 S23: 0.5155 REMARK 3 S31: -0.1940 S32: -0.3189 S33: 0.0762 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 455 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0438 16.2797 17.0480 REMARK 3 T TENSOR REMARK 3 T11: -0.0099 T22: 0.0111 REMARK 3 T33: -0.0174 T12: -0.0138 REMARK 3 T13: 0.0041 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.3651 L22: 2.0512 REMARK 3 L33: 4.4486 L12: -0.4493 REMARK 3 L13: 0.0736 L23: -0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.0429 S13: 0.0132 REMARK 3 S21: 0.0845 S22: 0.0095 S23: -0.0439 REMARK 3 S31: 0.0554 S32: 0.1028 S33: -0.1061 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 518 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2057 10.2328 24.4596 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: -0.0603 REMARK 3 T33: -0.0269 T12: 0.0536 REMARK 3 T13: -0.0841 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 11.4226 L22: 4.5747 REMARK 3 L33: 3.4711 L12: 2.3735 REMARK 3 L13: -0.9070 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: 0.0043 S13: 0.0164 REMARK 3 S21: 0.7203 S22: 0.1139 S23: -0.5393 REMARK 3 S31: 0.2544 S32: 0.3248 S33: -0.2368 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 519 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3293 1.2922 14.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: -0.0228 REMARK 3 T33: 0.0433 T12: 0.0176 REMARK 3 T13: 0.0078 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 6.1312 L22: 2.8109 REMARK 3 L33: 3.6266 L12: -2.9748 REMARK 3 L13: 1.1704 L23: 0.2958 REMARK 3 S TENSOR REMARK 3 S11: 0.1544 S12: 0.1765 S13: -0.6382 REMARK 3 S21: -0.2393 S22: -0.1218 S23: -0.0883 REMARK 3 S31: 0.8560 S32: 0.2132 S33: -0.0326 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1443 0.8407 24.9446 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0835 REMARK 3 T33: 0.0502 T12: 0.1610 REMARK 3 T13: -0.1041 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.9493 L22: 12.3410 REMARK 3 L33: 17.9874 L12: -0.2277 REMARK 3 L13: -0.6258 L23: 0.5650 REMARK 3 S TENSOR REMARK 3 S11: -0.5198 S12: -0.4386 S13: -0.0321 REMARK 3 S21: 0.5646 S22: 0.0481 S23: -0.4916 REMARK 3 S31: 0.7927 S32: 0.6204 S33: 0.4717 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 425 B 438 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1865 1.2853 34.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.0228 REMARK 3 T33: 0.0079 T12: -0.0366 REMARK 3 T13: 0.0142 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 1.4330 REMARK 3 L33: 7.6936 L12: -1.4222 REMARK 3 L13: -2.4234 L23: 3.1445 REMARK 3 S TENSOR REMARK 3 S11: -0.1725 S12: 0.3864 S13: -0.2392 REMARK 3 S21: -0.0002 S22: -0.0465 S23: 0.1615 REMARK 3 S31: 0.7597 S32: -0.6148 S33: 0.2189 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 439 B 454 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9018 0.0506 46.3996 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: -0.1043 REMARK 3 T33: -0.1591 T12: 0.0229 REMARK 3 T13: -0.0098 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.5801 L22: 19.1107 REMARK 3 L33: 4.3173 L12: 0.6896 REMARK 3 L13: 0.5305 L23: -4.3142 REMARK 3 S TENSOR REMARK 3 S11: -0.1739 S12: -0.1216 S13: -0.0773 REMARK 3 S21: 0.7953 S22: 0.0060 S23: -0.1403 REMARK 3 S31: -0.0569 S32: 0.0747 S33: 0.1680 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 455 B 499 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6709 12.2191 39.3144 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.0087 REMARK 3 T33: -0.0303 T12: -0.0209 REMARK 3 T13: -0.0270 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9768 L22: 4.1846 REMARK 3 L33: 3.8466 L12: -0.3012 REMARK 3 L13: -1.7581 L23: -1.1287 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.0208 S13: 0.0185 REMARK 3 S21: 0.0026 S22: 0.0442 S23: 0.0819 REMARK 3 S31: 0.1115 S32: -0.0118 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 500 B 514 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5494 18.0687 42.4243 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.0251 REMARK 3 T33: 0.1156 T12: 0.0299 REMARK 3 T13: -0.0022 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 4.8862 L22: 4.9392 REMARK 3 L33: 12.0928 L12: 1.2600 REMARK 3 L13: 5.2098 L23: -3.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.0737 S13: 0.0141 REMARK 3 S21: -0.1929 S22: 0.3837 S23: 0.8594 REMARK 3 S31: -0.2212 S32: -0.5943 S33: -0.3523 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 515 B 532 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5791 25.5876 37.4853 REMARK 3 T TENSOR REMARK 3 T11: -0.0309 T22: -0.0326 REMARK 3 T33: 0.0363 T12: -0.0497 REMARK 3 T13: -0.0095 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.1064 L22: 2.1798 REMARK 3 L33: 8.0920 L12: -1.4513 REMARK 3 L13: -1.2658 L23: 0.8600 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: 0.2284 S13: 0.4172 REMARK 3 S21: -0.0586 S22: -0.0154 S23: -0.0594 REMARK 3 S31: -0.5833 S32: -0.0845 S33: -0.0938 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 533 B 545 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8397 27.4749 40.0823 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.0798 REMARK 3 T33: 0.3420 T12: 0.0945 REMARK 3 T13: 0.0397 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 6.6087 L22: 11.4796 REMARK 3 L33: 22.9092 L12: 0.7538 REMARK 3 L13: -2.0024 L23: 6.8864 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.2017 S13: 0.5472 REMARK 3 S21: 0.4584 S22: -0.1542 S23: 1.3379 REMARK 3 S31: -0.7811 S32: -1.5129 S33: 0.2616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3C5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 26.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SVX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MG CHLORIDE, 0.1 M TRIS REMARK 280 HYDROCHLORIDE PH 8.5, 25% W/V PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.05600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE 2 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAINS REMARK 300 A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 24.40388 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 37.05600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.37672 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 GLU A 547 REMARK 465 LYS A 548 REMARK 465 ASN A 549 REMARK 465 GLU A 550 REMARK 465 SER A 551 REMARK 465 SER A 552 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 SER A 555 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B 546 REMARK 465 GLU B 547 REMARK 465 LYS B 548 REMARK 465 ASN B 549 REMARK 465 GLU B 550 REMARK 465 SER B 551 REMARK 465 SER B 552 REMARK 465 SER B 553 REMARK 465 ALA B 554 REMARK 465 SER B 555 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 438 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 438 O HOH A 207 1.54 REMARK 500 HH TYR A 516 O HOH A 152 1.54 REMARK 500 OE1 GLN B 493 O HOH B 175 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS A 484 NE2 GLN B 493 1455 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 484 11.13 82.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 3C5R A 425 555 UNP Q99728 BARD1_HUMAN 425 555 DBREF 3C5R B 425 555 UNP Q99728 BARD1_HUMAN 425 555 SEQADV 3C5R GLY A -5 UNP Q99728 EXPRESSION TAG SEQADV 3C5R ILE A -4 UNP Q99728 EXPRESSION TAG SEQADV 3C5R ASP A -3 UNP Q99728 EXPRESSION TAG SEQADV 3C5R PRO A -2 UNP Q99728 EXPRESSION TAG SEQADV 3C5R PHE A -1 UNP Q99728 EXPRESSION TAG SEQADV 3C5R THR A 0 UNP Q99728 EXPRESSION TAG SEQADV 3C5R GLY B -5 UNP Q99728 EXPRESSION TAG SEQADV 3C5R ILE B -4 UNP Q99728 EXPRESSION TAG SEQADV 3C5R ASP B -3 UNP Q99728 EXPRESSION TAG SEQADV 3C5R PRO B -2 UNP Q99728 EXPRESSION TAG SEQADV 3C5R PHE B -1 UNP Q99728 EXPRESSION TAG SEQADV 3C5R THR B 0 UNP Q99728 EXPRESSION TAG SEQRES 1 A 137 GLY ILE ASP PRO PHE THR ASN HIS ARG GLY GLU THR LEU SEQRES 2 A 137 LEU HIS ILE ALA SER ILE LYS GLY ASP ILE PRO SER VAL SEQRES 3 A 137 GLU TYR LEU LEU GLN ASN GLY SER ASP PRO ASN VAL LYS SEQRES 4 A 137 ASP HIS ALA GLY TRP THR PRO LEU HIS GLU ALA CYS ASN SEQRES 5 A 137 HIS GLY HIS LEU LYS VAL VAL GLU LEU LEU LEU GLN HIS SEQRES 6 A 137 LYS ALA LEU VAL ASN THR THR GLY TYR GLN ASN ASP SER SEQRES 7 A 137 PRO LEU HIS ASP ALA ALA LYS ASN GLY HIS VAL ASP ILE SEQRES 8 A 137 VAL LYS LEU LEU LEU SER TYR GLY ALA SER ARG ASN ALA SEQRES 9 A 137 VAL ASN ILE PHE GLY LEU ARG PRO VAL ASP TYR THR ASP SEQRES 10 A 137 ASP GLU SER MET LYS SER LEU LEU LEU LEU PRO GLU LYS SEQRES 11 A 137 ASN GLU SER SER SER ALA SER SEQRES 1 B 137 GLY ILE ASP PRO PHE THR ASN HIS ARG GLY GLU THR LEU SEQRES 2 B 137 LEU HIS ILE ALA SER ILE LYS GLY ASP ILE PRO SER VAL SEQRES 3 B 137 GLU TYR LEU LEU GLN ASN GLY SER ASP PRO ASN VAL LYS SEQRES 4 B 137 ASP HIS ALA GLY TRP THR PRO LEU HIS GLU ALA CYS ASN SEQRES 5 B 137 HIS GLY HIS LEU LYS VAL VAL GLU LEU LEU LEU GLN HIS SEQRES 6 B 137 LYS ALA LEU VAL ASN THR THR GLY TYR GLN ASN ASP SER SEQRES 7 B 137 PRO LEU HIS ASP ALA ALA LYS ASN GLY HIS VAL ASP ILE SEQRES 8 B 137 VAL LYS LEU LEU LEU SER TYR GLY ALA SER ARG ASN ALA SEQRES 9 B 137 VAL ASN ILE PHE GLY LEU ARG PRO VAL ASP TYR THR ASP SEQRES 10 B 137 ASP GLU SER MET LYS SER LEU LEU LEU LEU PRO GLU LYS SEQRES 11 B 137 ASN GLU SER SER SER ALA SER FORMUL 3 HOH *229(H2 O) HELIX 1 1 THR A 430 GLY A 439 1 10 HELIX 2 2 ASP A 440 ASN A 450 1 11 HELIX 3 3 THR A 463 HIS A 471 1 9 HELIX 4 4 HIS A 473 HIS A 483 1 11 HELIX 5 5 GLY A 491 ASP A 495 5 5 HELIX 6 6 SER A 496 ASN A 504 1 9 HELIX 7 7 HIS A 506 TYR A 516 1 11 HELIX 8 8 ARG A 529 THR A 534 5 6 HELIX 9 9 ASP A 536 LEU A 544 1 9 HELIX 10 10 THR B 430 GLY B 439 1 10 HELIX 11 11 ASP B 440 ASN B 450 1 11 HELIX 12 12 THR B 463 GLY B 472 1 10 HELIX 13 13 HIS B 473 HIS B 483 1 11 HELIX 14 14 GLY B 491 ASP B 495 5 5 HELIX 15 15 SER B 496 ASN B 504 1 9 HELIX 16 16 HIS B 506 TYR B 516 1 11 HELIX 17 17 ARG B 529 THR B 534 5 6 HELIX 18 18 ASP B 536 LEU B 544 1 9 CISPEP 1 LYS B 438 GLY B 439 0 -19.15 CRYST1 37.847 74.112 51.174 90.00 105.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026422 0.000000 0.007194 0.00000 SCALE2 0.000000 0.013493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020252 0.00000