PDB Short entry for 3C5W HEADER HYDROLASE 01-FEB-08 3C5W TITLE COMPLEX BETWEEN PP2A-SPECIFIC METHYLESTERASE PME-1 AND PP2A CORE TITLE 2 ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PP2A A SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PP2A C SUBUNIT; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PP2A-SPECIFIC METHYLESTERASE PME-1; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLESTERASE, PHOSPHATASE, PP2A, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.XING,Z.LI,Y.CHEN,J.STOCK,P.D.JEFFREY,Y.SHI REVDAT 7 03-APR-24 3C5W 1 REMARK REVDAT 6 21-FEB-24 3C5W 1 SEQADV REVDAT 5 26-JUL-17 3C5W 1 SOURCE REVDAT 4 13-JUL-11 3C5W 1 VERSN REVDAT 3 24-FEB-09 3C5W 1 VERSN REVDAT 2 10-JUN-08 3C5W 1 JRNL REVDAT 1 15-APR-08 3C5W 0 JRNL AUTH Y.XING,Z.LI,Y.CHEN,J.B.STOCK,P.D.JEFFREY,Y.SHI JRNL TITL STRUCTURAL MECHANISM OF DEMETHYLATION AND INACTIVATION OF JRNL TITL 2 PROTEIN PHOSPHATASE 2A. JRNL REF CELL(CAMBRIDGE,MASS.) V. 133 154 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18394995 JRNL DOI 10.1016/J.CELL.2008.02.041 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0038 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.32000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.438 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.325 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6579 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8922 ; 1.087 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 811 ; 5.123 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;39.029 ;24.276 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1142 ;18.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1005 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4950 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3244 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4503 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4175 ; 0.249 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6557 ; 0.445 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2730 ; 0.633 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2365 ; 1.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -35.9461 2.1780 42.6351 REMARK 3 T TENSOR REMARK 3 T11: .3270 T22: .4444 REMARK 3 T33: .1794 T12: .0837 REMARK 3 T13: .0498 T23: -.0687 REMARK 3 L TENSOR REMARK 3 L11: 11.0328 L22: 6.9677 REMARK 3 L33: 6.9044 L12: -2.4129 REMARK 3 L13: -2.1094 L23: .4251 REMARK 3 S TENSOR REMARK 3 S11: .3782 S12: .0349 S13: -.1889 REMARK 3 S21: .2988 S22: -.2210 S23: .9352 REMARK 3 S31: .9379 S32: -.2054 S33: -.1573 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): -34.4704 2.9924 28.3509 REMARK 3 T TENSOR REMARK 3 T11: -.0857 T22: -.0594 REMARK 3 T33: .3068 T12: -.0145 REMARK 3 T13: -.0566 T23: .0778 REMARK 3 L TENSOR REMARK 3 L11: 10.5488 L22: 1.0825 REMARK 3 L33: 7.2277 L12: -2.0080 REMARK 3 L13: -4.4543 L23: 1.7018 REMARK 3 S TENSOR REMARK 3 S11: -.5512 S12: -.7235 S13: .7518 REMARK 3 S21: -.2593 S22: .3857 S23: .9387 REMARK 3 S31: -.4504 S32: -.3627 S33: .1655 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 455 A 589 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0487 -8.7261 7.2781 REMARK 3 T TENSOR REMARK 3 T11: .0515 T22: .3031 REMARK 3 T33: -.1483 T12: -.2975 REMARK 3 T13: -.0379 T23: .0178 REMARK 3 L TENSOR REMARK 3 L11: 4.4106 L22: 1.6241 REMARK 3 L33: 2.2941 L12: .3187 REMARK 3 L13: -2.6385 L23: -.6808 REMARK 3 S TENSOR REMARK 3 S11: -.3509 S12: 1.2696 S13: -.3582 REMARK 3 S21: -.5932 S22: .1747 S23: .5516 REMARK 3 S31: .2963 S32: -.7657 S33: .1763 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 293 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5805 -2.8999 20.9402 REMARK 3 T TENSOR REMARK 3 T11: -.2067 T22: -.2771 REMARK 3 T33: -.2787 T12: -.0494 REMARK 3 T13: .0212 T23: -.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.1165 L22: 1.8864 REMARK 3 L33: 2.4860 L12: .4031 REMARK 3 L13: -.1517 L23: -.2950 REMARK 3 S TENSOR REMARK 3 S11: -.0511 S12: .2420 S13: -.1052 REMARK 3 S21: -.0734 S22: .0574 S23: -.0669 REMARK 3 S31: .3041 S32: .0489 S33: -.0063 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 39 P 376 REMARK 3 RESIDUE RANGE : C 304 C 309 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6125 1.2218 52.5886 REMARK 3 T TENSOR REMARK 3 T11: -.1149 T22: -.0634 REMARK 3 T33: -.0996 T12: -.0943 REMARK 3 T13: -.0792 T23: -.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.3233 L22: 2.6104 REMARK 3 L33: 3.7488 L12: -.9654 REMARK 3 L13: .7763 L23: -1.8643 REMARK 3 S TENSOR REMARK 3 S11: -.1714 S12: -.1943 S13: .0232 REMARK 3 S21: .4565 S22: -.1691 S23: -.4014 REMARK 3 S31: -.3589 S32: .4543 S33: .3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3C5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000046380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20623 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PP2A A SUBUNIT, PP2A C SUBUNIT, PME-1 MONOMER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG3350, 100 MM AMMONIUM REMARK 280 CITRATE, AND 5 MM DTT, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.64600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.41950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.64600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.41950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 MET A 8 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 VAL C 5 REMARK 465 ARG C 294 REMARK 465 ARG C 295 REMARK 465 GLY C 296 REMARK 465 GLU C 297 REMARK 465 PRO C 298 REMARK 465 HIS C 299 REMARK 465 VAL C 300 REMARK 465 THR C 301 REMARK 465 ARG C 302 REMARK 465 ARG C 303 REMARK 465 GLY P 35 REMARK 465 SER P 36 REMARK 465 HIS P 37 REMARK 465 MET P 38 REMARK 465 GLU P 239 REMARK 465 GLY P 240 REMARK 465 GLY P 377 REMARK 465 GLY P 378 REMARK 465 PHE P 379 REMARK 465 GLN P 380 REMARK 465 CYS P 381 REMARK 465 VAL P 382 REMARK 465 PHE P 383 REMARK 465 PRO P 384 REMARK 465 GLY P 385 REMARK 465 CYS P 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -14.48 -159.53 REMARK 500 LEU A 42 80.86 -168.34 REMARK 500 LEU A 404 -33.18 -148.07 REMARK 500 GLU A 441 -98.38 -65.77 REMARK 500 SER A 587 7.49 59.11 REMARK 500 ASP C 88 -113.24 -153.79 REMARK 500 TYR C 91 -64.70 -96.20 REMARK 500 ASN C 139 -158.96 -101.87 REMARK 500 GLN C 162 -45.20 -131.29 REMARK 500 ALA C 240 -131.42 -125.03 REMARK 500 HIS C 241 -31.72 78.98 REMARK 500 TYR C 267 18.76 59.43 REMARK 500 ARG C 268 -16.63 -142.78 REMARK 500 ASP C 279 -166.68 -78.63 REMARK 500 ASP C 306 53.33 -98.11 REMARK 500 ASN P 60 -118.74 -139.74 REMARK 500 ARG P 68 112.70 81.62 REMARK 500 HIS P 87 -156.95 -105.94 REMARK 500 SER P 114 -5.57 66.88 REMARK 500 TYR P 143 -72.73 -127.07 REMARK 500 ALA P 156 -115.60 39.27 REMARK 500 ARG P 201 151.88 -48.59 REMARK 500 GLU P 290 79.34 -67.37 REMARK 500 PRO P 313 48.01 -79.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C5V RELATED DB: PDB REMARK 900 PME-1 MONOMER REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A HAS 47-399 RESIDUES DELETION AND CHAIN P HAS 239-283 LOOP REMARK 999 REPLACED BY EGK. THE PROTEIN CONSTRUCT (CHAIN P) IS A NON-CATALYTIC REMARK 999 MUTANT WITH SER156 REPLACED BY ALA. DBREF 3C5W A 9 46 UNP P30153 2AAA_HUMAN 9 46 DBREF 3C5W A 400 589 UNP P30153 2AAA_HUMAN 400 589 DBREF 3C5W C 1 309 UNP P67775 PP2AA_HUMAN 1 309 DBREF 3C5W P 39 238 UNP Q9Y570 PPME1_HUMAN 39 238 DBREF 3C5W P 284 386 UNP Q9Y570 PPME1_HUMAN 284 386 SEQADV 3C5W GLY A 5 UNP P30153 EXPRESSION TAG SEQADV 3C5W SER A 6 UNP P30153 EXPRESSION TAG SEQADV 3C5W HIS A 7 UNP P30153 EXPRESSION TAG SEQADV 3C5W MET A 8 UNP P30153 EXPRESSION TAG SEQADV 3C5W GLY C 0 UNP P67775 EXPRESSION TAG SEQADV 3C5W GLY P 35 UNP Q9Y570 EXPRESSION TAG SEQADV 3C5W SER P 36 UNP Q9Y570 EXPRESSION TAG SEQADV 3C5W HIS P 37 UNP Q9Y570 EXPRESSION TAG SEQADV 3C5W MET P 38 UNP Q9Y570 EXPRESSION TAG SEQADV 3C5W ALA P 156 UNP Q9Y570 SER 156 SEE REMARK 999 SEQADV 3C5W GLU P 239 UNP Q9Y570 SEE REMARK 999 SEQADV 3C5W GLY P 240 UNP Q9Y570 SEE REMARK 999 SEQADV 3C5W LYS P 283 UNP Q9Y570 SEE REMARK 999 SEQRES 1 A 232 GLY SER HIS MET SER LEU TYR PRO ILE ALA VAL LEU ILE SEQRES 2 A 232 ASP GLU LEU ARG ASN GLU ASP VAL GLN LEU ARG LEU ASN SEQRES 3 A 232 SER ILE LYS LYS LEU SER THR ILE ALA LEU ALA LEU GLY SEQRES 4 A 232 VAL GLU ARG LEU SER GLN SER LEU LEU PRO ALA ILE VAL SEQRES 5 A 232 GLU LEU ALA GLU ASP ALA LYS TRP ARG VAL ARG LEU ALA SEQRES 6 A 232 ILE ILE GLU TYR MET PRO LEU LEU ALA GLY GLN LEU GLY SEQRES 7 A 232 VAL GLU PHE PHE ASP GLU LYS LEU ASN SER LEU CYS MET SEQRES 8 A 232 ALA TRP LEU VAL ASP HIS VAL TYR ALA ILE ARG GLU ALA SEQRES 9 A 232 ALA THR SER ASN LEU LYS LYS LEU VAL GLU LYS PHE GLY SEQRES 10 A 232 LYS GLU TRP ALA HIS ALA THR ILE ILE PRO LYS VAL LEU SEQRES 11 A 232 ALA MET SER GLY ASP PRO ASN TYR LEU HIS ARG MET THR SEQRES 12 A 232 THR LEU PHE CYS ILE ASN VAL LEU SER GLU VAL CYS GLY SEQRES 13 A 232 GLN ASP ILE THR THR LYS HIS MET LEU PRO THR VAL LEU SEQRES 14 A 232 ARG MET ALA GLY ASP PRO VAL ALA ASN VAL ARG PHE ASN SEQRES 15 A 232 VAL ALA LYS SER LEU GLN LYS ILE GLY PRO ILE LEU ASP SEQRES 16 A 232 ASN SER THR LEU GLN SER GLU VAL LYS PRO ILE LEU GLU SEQRES 17 A 232 LYS LEU THR GLN ASP GLN ASP VAL ASP VAL LYS TYR PHE SEQRES 18 A 232 ALA GLN GLU ALA LEU THR VAL LEU SER LEU ALA SEQRES 1 C 310 GLY MET ASP GLU LYS VAL PHE THR LYS GLU LEU ASP GLN SEQRES 2 C 310 TRP ILE GLU GLN LEU ASN GLU CYS LYS GLN LEU SER GLU SEQRES 3 C 310 SER GLN VAL LYS SER LEU CYS GLU LYS ALA LYS GLU ILE SEQRES 4 C 310 LEU THR LYS GLU SER ASN VAL GLN GLU VAL ARG CYS PRO SEQRES 5 C 310 VAL THR VAL CYS GLY ASP VAL HIS GLY GLN PHE HIS ASP SEQRES 6 C 310 LEU MET GLU LEU PHE ARG ILE GLY GLY LYS SER PRO ASP SEQRES 7 C 310 THR ASN TYR LEU PHE MET GLY ASP TYR VAL ASP ARG GLY SEQRES 8 C 310 TYR TYR SER VAL GLU THR VAL THR LEU LEU VAL ALA LEU SEQRES 9 C 310 LYS VAL ARG TYR ARG GLU ARG ILE THR ILE LEU ARG GLY SEQRES 10 C 310 ASN HIS GLU SER ARG GLN ILE THR GLN VAL TYR GLY PHE SEQRES 11 C 310 TYR ASP GLU CYS LEU ARG LYS TYR GLY ASN ALA ASN VAL SEQRES 12 C 310 TRP LYS TYR PHE THR ASP LEU PHE ASP TYR LEU PRO LEU SEQRES 13 C 310 THR ALA LEU VAL ASP GLY GLN ILE PHE CYS LEU HIS GLY SEQRES 14 C 310 GLY LEU SER PRO SER ILE ASP THR LEU ASP HIS ILE ARG SEQRES 15 C 310 ALA LEU ASP ARG LEU GLN GLU VAL PRO HIS GLU GLY PRO SEQRES 16 C 310 MET CYS ASP LEU LEU TRP SER ASP PRO ASP ASP ARG GLY SEQRES 17 C 310 GLY TRP GLY ILE SER PRO ARG GLY ALA GLY TYR THR PHE SEQRES 18 C 310 GLY GLN ASP ILE SER GLU THR PHE ASN HIS ALA ASN GLY SEQRES 19 C 310 LEU THR LEU VAL SER ARG ALA HIS GLN LEU VAL MET GLU SEQRES 20 C 310 GLY TYR ASN TRP CYS HIS ASP ARG ASN VAL VAL THR ILE SEQRES 21 C 310 PHE SER ALA PRO ASN TYR CYS TYR ARG CYS GLY ASN GLN SEQRES 22 C 310 ALA ALA ILE MET GLU LEU ASP ASP THR LEU LYS TYR SER SEQRES 23 C 310 PHE LEU GLN PHE ASP PRO ALA PRO ARG ARG GLY GLU PRO SEQRES 24 C 310 HIS VAL THR ARG ARG THR PRO ASP TYR PHE LEU SEQRES 1 P 310 GLY SER HIS MET ARG ASP PHE SER PRO VAL PRO TRP SER SEQRES 2 P 310 GLN TYR PHE GLU SER MET GLU ASP VAL GLU VAL GLU ASN SEQRES 3 P 310 GLU THR GLY LYS ASP THR PHE ARG VAL TYR LYS SER GLY SEQRES 4 P 310 SER GLU GLY PRO VAL LEU LEU LEU LEU HIS GLY GLY GLY SEQRES 5 P 310 HIS SER ALA LEU SER TRP ALA VAL PHE THR ALA ALA ILE SEQRES 6 P 310 ILE SER ARG VAL GLN CYS ARG ILE VAL ALA LEU ASP LEU SEQRES 7 P 310 ARG SER HIS GLY GLU THR LYS VAL LYS ASN PRO GLU ASP SEQRES 8 P 310 LEU SER ALA GLU THR MET ALA LYS ASP VAL GLY ASN VAL SEQRES 9 P 310 VAL GLU ALA MET TYR GLY ASP LEU PRO PRO PRO ILE MET SEQRES 10 P 310 LEU ILE GLY HIS ALA MET GLY GLY ALA ILE ALA VAL HIS SEQRES 11 P 310 THR ALA SER SER ASN LEU VAL PRO SER LEU LEU GLY LEU SEQRES 12 P 310 CYS MET ILE ASP VAL VAL GLU GLY THR ALA MET ASP ALA SEQRES 13 P 310 LEU ASN SER MET GLN ASN PHE LEU ARG GLY ARG PRO LYS SEQRES 14 P 310 THR PHE LYS SER LEU GLU ASN ALA ILE GLU TRP SER VAL SEQRES 15 P 310 LYS SER GLY GLN ILE ARG ASN LEU GLU SER ALA ARG VAL SEQRES 16 P 310 SER MET VAL GLY GLN VAL LYS GLN CYS GLU GLY LYS PRO SEQRES 17 P 310 TYR THR TRP ARG ILE GLU LEU ALA LYS THR GLU LYS TYR SEQRES 18 P 310 TRP ASP GLY TRP PHE ARG GLY LEU SER ASN LEU PHE LEU SEQRES 19 P 310 SER CYS PRO ILE PRO LYS LEU LEU LEU LEU ALA GLY VAL SEQRES 20 P 310 ASP ARG LEU ASP LYS ASP LEU THR ILE GLY GLN MET GLN SEQRES 21 P 310 GLY LYS PHE GLN MET GLN VAL LEU PRO GLN CYS GLY HIS SEQRES 22 P 310 ALA VAL HIS GLU ASP ALA PRO ASP LYS VAL ALA GLU ALA SEQRES 23 P 310 VAL ALA THR PHE LEU ILE ARG HIS ARG PHE ALA GLU PRO SEQRES 24 P 310 ILE GLY GLY PHE GLN CYS VAL PHE PRO GLY CYS FORMUL 4 HOH *62(H2 O) HELIX 1 1 TYR A 11 ARG A 21 1 11 HELIX 2 2 ASP A 24 LYS A 33 1 10 HELIX 3 3 LYS A 34 GLY A 43 1 10 HELIX 4 4 GLU A 45 SER A 403 1 6 HELIX 5 5 LEU A 404 ALA A 412 1 9 HELIX 6 6 LYS A 416 GLU A 425 1 10 HELIX 7 7 TYR A 426 GLY A 435 1 10 HELIX 8 8 VAL A 436 PHE A 439 5 4 HELIX 9 9 LYS A 442 LEU A 451 1 10 HELIX 10 10 VAL A 455 GLY A 474 1 20 HELIX 11 11 GLY A 474 THR A 481 1 8 HELIX 12 12 THR A 481 MET A 489 1 9 HELIX 13 13 SER A 490 ASP A 492 5 3 HELIX 14 14 ASN A 494 MET A 521 1 28 HELIX 15 15 MET A 521 MET A 528 1 8 HELIX 16 16 ALA A 529 ASP A 531 5 3 HELIX 17 17 VAL A 533 GLY A 548 1 16 HELIX 18 18 PRO A 549 LEU A 551 5 3 HELIX 19 19 ASP A 552 GLU A 559 1 8 HELIX 20 20 VAL A 560 GLN A 569 1 10 HELIX 21 21 ASP A 572 LEU A 586 1 15 HELIX 22 22 PHE C 6 ASN C 18 1 13 HELIX 23 23 SER C 24 LYS C 41 1 18 HELIX 24 24 GLN C 61 GLY C 73 1 13 HELIX 25 25 TYR C 92 TYR C 107 1 16 HELIX 26 26 SER C 120 GLY C 128 1 9 HELIX 27 27 GLY C 128 GLY C 138 1 11 HELIX 28 28 ALA C 140 ASP C 151 1 12 HELIX 29 29 THR C 176 LEU C 183 1 8 HELIX 30 30 GLY C 193 SER C 201 1 9 HELIX 31 31 GLY C 221 ASN C 232 1 12 HELIX 32 32 ASN C 264 ARG C 268 5 5 HELIX 33 33 PRO P 45 TYR P 49 5 5 HELIX 34 34 SER P 88 SER P 91 5 4 HELIX 35 35 TRP P 92 SER P 101 1 10 HELIX 36 36 SER P 127 TYR P 143 1 17 HELIX 37 37 ALA P 156 SER P 168 1 13 HELIX 38 38 VAL P 183 ARG P 199 1 17 HELIX 39 39 SER P 207 SER P 218 1 12 HELIX 40 40 ASN P 223 MET P 231 1 9 HELIX 41 41 GLU P 290 LYS P 296 5 7 HELIX 42 42 TYR P 297 ARG P 303 1 7 HELIX 43 43 GLY P 304 CYS P 312 1 9 HELIX 44 44 GLY P 322 LEU P 326 5 5 HELIX 45 45 ASP P 327 GLN P 336 1 10 HELIX 46 46 ALA P 350 ALA P 355 1 6 HELIX 47 47 ALA P 355 HIS P 370 1 16 SHEET 1 A 6 VAL C 45 VAL C 48 0 SHEET 2 A 6 THR C 156 VAL C 159 1 O LEU C 158 N VAL C 48 SHEET 3 A 6 ILE C 163 LEU C 166 -1 O CYS C 165 N ALA C 157 SHEET 4 A 6 LEU C 236 ARG C 239 1 O SER C 238 N PHE C 164 SHEET 5 A 6 VAL C 256 ILE C 259 1 O ILE C 259 N ARG C 239 SHEET 6 A 6 TYR C 248 CYS C 251 -1 N ASN C 249 O THR C 258 SHEET 1 B 5 ILE C 111 ILE C 113 0 SHEET 2 B 5 TYR C 80 PHE C 82 1 N PHE C 82 O THR C 112 SHEET 3 B 5 VAL C 52 CYS C 55 1 N CYS C 55 O LEU C 81 SHEET 4 B 5 ALA C 273 LEU C 278 -1 O MET C 276 N VAL C 54 SHEET 5 B 5 TYR C 284 PHE C 289 -1 O PHE C 289 N ALA C 273 SHEET 1 C 3 ASP C 202 PRO C 203 0 SHEET 2 C 3 TYR C 218 PHE C 220 1 O PHE C 220 N ASP C 202 SHEET 3 C 3 TRP C 209 ILE C 211 -1 N GLY C 210 O THR C 219 SHEET 1 D 8 SER P 52 GLU P 54 0 SHEET 2 D 8 VAL P 69 SER P 72 -1 O VAL P 69 N GLU P 54 SHEET 3 D 8 ARG P 106 LEU P 110 -1 O ALA P 109 N TYR P 70 SHEET 4 D 8 VAL P 78 LEU P 82 1 N LEU P 79 O ARG P 106 SHEET 5 D 8 ILE P 150 HIS P 155 1 O HIS P 155 N LEU P 82 SHEET 6 D 8 LEU P 174 ILE P 180 1 O ILE P 180 N GLY P 154 SHEET 7 D 8 LYS P 316 LEU P 320 1 O LEU P 317 N LEU P 177 SHEET 8 D 8 GLN P 340 VAL P 343 1 O GLN P 342 N LEU P 320 SHEET 1 E 2 GLU P 57 GLU P 59 0 SHEET 2 E 2 LYS P 64 THR P 66 -1 O ASP P 65 N VAL P 58 SHEET 1 F 2 VAL P 103 GLN P 104 0 SHEET 2 F 2 GLU P 374 PRO P 375 -1 O GLU P 374 N GLN P 104 SHEET 1 G 3 THR P 204 PHE P 205 0 SHEET 2 G 3 TYR P 285 TRP P 287 -1 O TYR P 285 N PHE P 205 SHEET 3 G 3 VAL P 235 GLN P 237 -1 N LYS P 236 O THR P 286 CISPEP 1 CYS C 50 PRO C 51 0 1.59 CISPEP 2 SER C 75 PRO C 76 0 6.39 CRYST1 129.292 54.839 125.146 90.00 110.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007734 0.000000 0.002949 0.00000 SCALE2 0.000000 0.018235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008552 0.00000