PDB Short entry for 3CFW HEADER CELL ADHESION 04-MAR-08 3CFW TITLE L-SELECTIN LECTIN AND EGF DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-SELECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF DOMAIN (UNP RESIDUES 39-194); COMPND 5 SYNONYM: SELECTIN L (LYMPHOCYTE ADHESION MOLECULE 1), ISOFORM CRA_B, COMPND 6 SELECTIN L, LYMPHOCYTE ADHESION MOLECULE 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L-SELECTIN, SELL; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: LEC 1; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: OVARY CELLS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PEE14.1 KEYWDS L-SELECTIN, LECTIN, EGF, CELL ADHESION, EGF-LIKE DOMAIN, KEYWDS 2 GLYCOPROTEIN, MEMBRANE, SUSHI, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEHTA,V.OGANESYAN,S.TERZYAN,T.MATHER,R.P.MCEVER REVDAT 6 30-AUG-23 3CFW 1 REMARK HETSYN REVDAT 5 29-JUL-20 3CFW 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 22-FEB-17 3CFW 1 JRNL REVDAT 3 13-JUL-11 3CFW 1 VERSN REVDAT 2 24-FEB-09 3CFW 1 VERSN REVDAT 1 18-MAR-08 3CFW 0 JRNL AUTH P.MEHTA-D'SOUZA,A.G.KLOPOCKI,V.OGANESYAN,S.TERZYAN,T.MATHER, JRNL AUTH 2 Z.LI,S.R.PANICKER,C.ZHU,R.P.MCEVER JRNL TITL GLYCAN BOUND TO THE SELECTIN LOW AFFINITY STATE ENGAGES JRNL TITL 2 GLU-88 TO STABILIZE THE HIGH AFFINITY STATE UNDER FORCE. JRNL REF J.BIOL.CHEM. V. 292 2510 2017 JRNL REFN ISSN 0021-9258 JRNL PMID 28011641 JRNL DOI 10.1074/JBC.M116.767186 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 13699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.515 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.549 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.584 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9767 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS/MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.250 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ESL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M SODIUM ACETATE TRIHYDRATE, REMARK 280 0.085 M TRIS-HCL, PH 8.5, 25.5 % W/V PEG 4000,15% V/V GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 59.23850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 59.23850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 59.23850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 59.23850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 59.23850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 59.23850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 157 REMARK 465 VAL A 158 REMARK 465 ASP A 159 REMARK 465 PRO A 160 REMARK 465 ARG A 161 REMARK 465 LEU A 162 REMARK 465 ILE A 163 REMARK 465 ASP A 164 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TRP A 125 REMARK 475 SER A 126 REMARK 475 CYS A 127 REMARK 475 SER A 128 REMARK 475 GLY A 129 REMARK 475 HIS A 130 REMARK 475 GLY A 131 REMARK 475 ASP A 145 REMARK 475 VAL A 146 REMARK 475 GLY A 147 REMARK 475 TYR A 148 REMARK 475 TYR A 149 REMARK 475 GLY A 150 REMARK 475 PRO A 151 REMARK 475 GLN A 152 REMARK 475 CYS A 153 REMARK 475 GLN A 154 REMARK 475 PHE A 155 REMARK 475 VAL A 156 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 66 C1 NAG B 1 1.45 REMARK 500 ND2 ASN A 22 C1 NAG A 206 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 23 -138.20 -141.96 REMARK 500 THR A 24 -60.82 -96.06 REMARK 500 TYR A 48 -151.11 68.88 REMARK 500 ASN A 75 42.81 -149.63 REMARK 500 TRP A 125 73.10 -101.57 REMARK 500 SER A 128 90.33 49.14 REMARK 500 HIS A 130 92.33 -63.82 REMARK 500 ASN A 139 -169.63 -165.60 REMARK 500 TYR A 149 -153.45 -154.81 REMARK 500 PRO A 151 -108.78 -64.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 NAG A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ESL RELATED DB: PDB REMARK 900 E-SELECTIN LECTIN AND EGF DOMAINS REMARK 900 RELATED ID: 1G1Q RELATED DB: PDB REMARK 900 P-SELECTIN LECTIN AND EGF DOMAINS REMARK 900 RELATED ID: 1G1R RELATED DB: PDB REMARK 900 P-SELECTIN LECTIN AND EGF DOMAINS WITH SIALYL LEWIS X REMARK 900 RELATED ID: 1G1S RELATED DB: PDB REMARK 900 P-SELECTIN LECTIN AND EGF DOMAINS WITH N-TERMINAL PEPTIDE OF PSGL-1 REMARK 900 RELATED ID: 1G1T RELATED DB: PDB REMARK 900 E-SELECTIN LECTIN AND EGF DOMAINS WITH SIALYL LEWIS X DBREF 3CFW A 1 156 UNP P14151 LYAM1_HUMAN 39 194 SEQADV 3CFW GLN A 157 UNP P14151 EXPRESSION TAG SEQADV 3CFW VAL A 158 UNP P14151 EXPRESSION TAG SEQADV 3CFW ASP A 159 UNP P14151 EXPRESSION TAG SEQADV 3CFW PRO A 160 UNP P14151 EXPRESSION TAG SEQADV 3CFW ARG A 161 UNP P14151 EXPRESSION TAG SEQADV 3CFW LEU A 162 UNP P14151 EXPRESSION TAG SEQADV 3CFW ILE A 163 UNP P14151 EXPRESSION TAG SEQADV 3CFW ASP A 164 UNP P14151 EXPRESSION TAG SEQRES 1 A 164 TRP THR TYR HIS TYR SER GLU LYS PRO MET ASN TRP GLN SEQRES 2 A 164 ARG ALA ARG ARG PHE CYS ARG ASP ASN TYR THR ASP LEU SEQRES 3 A 164 VAL ALA ILE GLN ASN LYS ALA GLU ILE GLU TYR LEU GLU SEQRES 4 A 164 LYS THR LEU PRO PHE SER ARG SER TYR TYR TRP ILE GLY SEQRES 5 A 164 ILE ARG LYS ILE GLY GLY ILE TRP THR TRP VAL GLY THR SEQRES 6 A 164 ASN LYS SER LEU THR GLU GLU ALA GLU ASN TRP GLY ASP SEQRES 7 A 164 GLY GLU PRO ASN ASN LYS LYS ASN LYS GLU ASP CYS VAL SEQRES 8 A 164 GLU ILE TYR ILE LYS ARG ASN LYS ASP ALA GLY LYS TRP SEQRES 9 A 164 ASN ASP ASP ALA CYS HIS LYS LEU LYS ALA ALA LEU CYS SEQRES 10 A 164 TYR THR ALA SER CYS GLN PRO TRP SER CYS SER GLY HIS SEQRES 11 A 164 GLY GLU CYS VAL GLU ILE ILE ASN ASN TYR THR CYS ASN SEQRES 12 A 164 CYS ASP VAL GLY TYR TYR GLY PRO GLN CYS GLN PHE VAL SEQRES 13 A 164 GLN VAL ASP PRO ARG LEU ILE ASP HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET MAN B 4 11 HET BMA B 5 11 HET NAG A 206 14 HET CA A 207 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 BMA C6 H12 O6 FORMUL 4 CA CA 2+ FORMUL 5 HOH *138(H2 O) HELIX 1 1 ASN A 11 TYR A 23 1 13 HELIX 2 2 ASN A 31 LEU A 42 1 12 HELIX 3 3 ASN A 83 LYS A 87 5 5 SHEET 1 A 3 THR A 2 MET A 10 0 SHEET 2 A 3 LYS A 113 THR A 119 -1 O CYS A 117 N HIS A 4 SHEET 3 A 3 ASP A 25 LEU A 26 -1 N ASP A 25 O TYR A 118 SHEET 1 B 5 THR A 2 MET A 10 0 SHEET 2 B 5 LYS A 113 THR A 119 -1 O CYS A 117 N HIS A 4 SHEET 3 B 5 TYR A 49 ILE A 51 1 N TRP A 50 O ALA A 114 SHEET 4 B 5 CYS A 90 ILE A 93 -1 O VAL A 91 N ILE A 51 SHEET 5 B 5 TRP A 104 ASP A 107 -1 O ASP A 107 N CYS A 90 SHEET 1 C 2 ILE A 53 ILE A 56 0 SHEET 2 C 2 ILE A 59 TRP A 62 -1 O THR A 61 N ARG A 54 SHEET 1 D 2 GLY A 131 ILE A 136 0 SHEET 2 D 2 ASN A 139 CYS A 144 -1 O THR A 141 N VAL A 134 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.07 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.04 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.05 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.04 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.03 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.39 LINK O3 MAN B 3 C1 MAN B 4 1555 1555 1.41 LINK O6 MAN B 3 C1 BMA B 5 1555 1555 1.41 CISPEP 1 GLU A 80 PRO A 81 0 -0.33 CRYST1 118.477 118.477 118.477 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008440 0.00000