PDB Short entry for 3CI5 HEADER STRUCTURAL PROTEIN 10-MAR-08 3CI5 TITLE COMPLEX OF PHOSPHORYLATED DICTYOSTELIUM DISCOIDEUM ACTIN WITH GELSOLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ACTIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: GELSOLIN; COMPND 6 CHAIN: G; COMPND 7 FRAGMENT: GELSOLIN SEGMENT 1 (UNP RESIDUES 52-176); COMPND 8 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN, AGEL; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 GENE: GSN; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS ACTIN, GELSOLIN, DICTYOSTELIUM DISCOIDEUM, PHOSPHORYLATED TYROSINE, KEYWDS 2 ACTIN-ASSOCIATED PROTEIN, METHYL HISTIDINE, ATP-BINDING, KEYWDS 3 CYTOSKELETON, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, STRUCTURAL KEYWDS 4 PROTEIN, ACTIN CAPPING, ACTIN-BINDING, ALTERNATIVE INITIATION, KEYWDS 5 AMYLOID, DISEASE MUTATION, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR K.BAEK,R.DOMINGUEZ REVDAT 6 15-NOV-23 3CI5 1 REMARK REVDAT 5 30-AUG-23 3CI5 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3CI5 1 REMARK REVDAT 3 13-JUL-11 3CI5 1 VERSN REVDAT 2 24-FEB-09 3CI5 1 VERSN REVDAT 1 19-AUG-08 3CI5 0 JRNL AUTH K.BAEK,X.LIU,F.FERRON,S.SHU,E.D.KORN,R.DOMINGUEZ JRNL TITL MODULATION OF ACTIN STRUCTURE AND FUNCTION BY JRNL TITL 2 PHOSPHORYLATION OF TYR-53 AND PROFILIN BINDING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 11748 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18689676 JRNL DOI 10.1073/PNAS.0805852105 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 66174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4352 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5972 ; 1.365 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 4.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;33.908 ;23.834 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;13.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3296 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2057 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2962 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 444 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.067 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2657 ; 3.440 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4229 ; 4.658 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 6.058 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1698 ; 7.828 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4584 ; 3.730 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 462 ;12.374 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4225 ; 8.069 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : 1-M PT/PD-COATED ULE MIRROR REMARK 200 OPTICS : 1-M PT/PD-COATED ULE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69701 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : 0.40700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.7M LI2SO4, 2MM ATP, 1MM REMARK 280 EDTA, 10% GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 89.21150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.52250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 89.21150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.52250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -325.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 408 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 43 REMARK 465 MET A 44 REMARK 465 VAL A 45 REMARK 465 GLY A 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 411 O HOH A 578 2.08 REMARK 500 NE2 GLN A 49 O2P PTR A 53 2.16 REMARK 500 OD1 ASP A 154 O HOH A 658 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 181 -150.70 -156.66 REMARK 500 ASN A 296 57.76 -149.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 47 GLY A 48 -100.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O2B REMARK 620 2 ATP A 401 O2G 87.6 REMARK 620 3 HOH A 460 O 84.2 170.0 REMARK 620 4 HOH A 466 O 92.7 89.5 85.3 REMARK 620 5 HOH A 651 O 93.8 106.6 79.6 162.9 REMARK 620 6 HOH A 665 O 176.9 91.1 96.8 84.5 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD2 77.1 REMARK 620 3 GLU G 73 OE1 77.6 109.3 REMARK 620 4 GLU G 73 OE2 118.9 89.0 51.5 REMARK 620 5 VAL G 121 O 152.2 89.3 130.0 84.4 REMARK 620 6 HOH G 418 O 80.8 97.8 140.2 160.2 77.2 REMARK 620 7 HOH G 430 O 102.5 179.2 70.0 90.7 91.4 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL G 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NM1 RELATED DB: PDB REMARK 900 MODEL STRUCTURE FOR MOLECULAR REPLACEMENT. REMARK 900 RELATED ID: 3CHW RELATED DB: PDB REMARK 900 RELATED ID: 3CIP RELATED DB: PDB DBREF 3CI5 A 1 375 UNP P07830 ACT1_DICDI 2 376 DBREF 3CI5 G 1 125 UNP P06396 GELS_HUMAN 52 176 SEQADV 3CI5 HIS G 0 UNP P06396 EXPRESSION TAG SEQRES 1 A 375 ASP GLY GLU ASP VAL GLN ALA LEU VAL ILE ASP ASN GLY SEQRES 2 A 375 SER GLY MET CYS LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS THR GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 PTR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIC GLY ILE VAL THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO VAL LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN THR PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL MET ASP SER GLY SEQRES 13 A 375 ASP GLY VAL SER HIS THR VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE LEU ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR MET MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE THR THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU ALA TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ALA GLU MET GLN THR ALA ALA SER SER SER SEQRES 19 A 375 ALA LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU ALA SEQRES 21 A 375 LEU PHE GLN PRO SER PHE LEU GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 VAL ASP ILE ARG LYS ASP LEU TYR GLY ASN VAL VAL LEU SEQRES 24 A 375 SER GLY GLY THR THR MET PHE PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET ASN LYS GLU LEU THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE SER LYS GLU GLU TYR ASP GLU SEQRES 29 A 375 SER GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 G 126 HIS MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA GLY SEQRES 2 G 126 LYS GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS PHE SEQRES 3 G 126 ASP LEU VAL PRO VAL PRO THR ASN LEU TYR GLY ASP PHE SEQRES 4 G 126 PHE THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL GLN SEQRES 5 G 126 LEU ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR TRP SEQRES 6 G 126 LEU GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA ALA SEQRES 7 G 126 ALA ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN GLY SEQRES 8 G 126 ARG ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SER SEQRES 9 G 126 ALA THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS TYR SEQRES 10 G 126 LYS LYS GLY GLY VAL ALA SER GLY PHE MODRES 3CI5 PTR A 53 TYR O-PHOSPHOTYROSINE MODRES 3CI5 HIC A 73 HIS 4-METHYL-HISTIDINE HET PTR A 53 16 HET HIC A 73 11 HET MG A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET ATP A 401 31 HET GOL A 412 6 HET GOL A 413 6 HET SO4 G 126 5 HET CA G 401 1 HET GOL G 402 6 HET GOL G 403 6 HET GOL G 404 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM HIC 4-METHYL-HISTIDINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN PTR PHOSPHONOTYROSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PTR C9 H12 N O6 P FORMUL 1 HIC C7 H11 N3 O2 FORMUL 3 MG MG 2+ FORMUL 4 SO4 10(O4 S 2-) FORMUL 13 ATP C10 H16 N5 O13 P3 FORMUL 14 GOL 5(C3 H8 O3) FORMUL 17 CA CA 2+ FORMUL 21 HOH *460(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 ARG A 196 1 16 HELIX 8 8 THR A 202 ALA A 217 1 16 HELIX 9 9 ASP A 222 SER A 233 1 12 HELIX 10 10 ASN A 252 ALA A 260 1 9 HELIX 11 11 LEU A 261 PHE A 262 5 2 HELIX 12 12 GLN A 263 GLY A 268 5 6 HELIX 13 13 GLY A 273 LYS A 284 1 12 HELIX 14 14 CYS A 285 ASP A 288 5 4 HELIX 15 15 ILE A 289 GLY A 295 1 7 HELIX 16 16 GLY A 301 MET A 305 5 5 HELIX 17 17 GLY A 308 ALA A 321 1 14 HELIX 18 18 TYR A 337 LEU A 349 1 13 HELIX 19 19 THR A 351 MET A 355 5 5 HELIX 20 20 LYS A 359 GLY A 366 1 8 HELIX 21 21 ILE A 369 CYS A 374 1 6 HELIX 22 22 HIS G 5 ALA G 11 1 7 HELIX 23 23 PRO G 31 TYR G 35 5 5 HELIX 24 24 SER G 70 LEU G 88 1 19 HELIX 25 25 SER G 103 GLY G 108 1 6 SHEET 1 A 6 ALA A 29 PRO A 32 0 SHEET 2 A 6 MET A 16 PHE A 21 -1 N CYS A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 VAL A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 SER A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 PTR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O PTR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 VAL A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 SER A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 LEU A 176 LEU A 178 -1 O LEU A 178 N SER A 160 SHEET 1 E 5 TYR A 169 ALA A 170 0 SHEET 2 E 5 SER A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 5 GLY A 150 SER A 155 -1 N VAL A 152 O VAL A 163 SHEET 4 E 5 VAL A 297 SER A 300 1 O VAL A 298 N ILE A 151 SHEET 5 E 5 ILE A 329 ILE A 330 1 O ILE A 330 N VAL A 297 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 G 5 ASP G 26 PRO G 29 0 SHEET 2 G 5 GLY G 16 GLU G 23 -1 N ARG G 21 O VAL G 28 SHEET 3 G 5 ALA G 43 GLN G 51 -1 O THR G 49 N GLY G 16 SHEET 4 G 5 LEU G 57 LEU G 65 -1 O GLN G 58 N VAL G 50 SHEET 5 G 5 ALA G 92 VAL G 98 1 O GLU G 97 N TYR G 63 SHEET 1 H 2 ASP G 37 PHE G 39 0 SHEET 2 H 2 LYS G 115 LYS G 117 1 O LYS G 115 N PHE G 38 LINK C SER A 52 N PTR A 53 1555 1555 1.33 LINK C PTR A 53 N VAL A 54 1555 1555 1.32 LINK C GLU A 72 N HIC A 73 1555 1555 1.33 LINK C HIC A 73 N GLY A 74 1555 1555 1.33 LINK O2B ATP A 401 MG MG A 402 1555 1555 2.26 LINK O2G ATP A 401 MG MG A 402 1555 1555 1.98 LINK MG MG A 402 O HOH A 460 1555 1555 2.23 LINK MG MG A 402 O HOH A 466 1555 1555 2.29 LINK MG MG A 402 O HOH A 651 1555 1555 2.18 LINK MG MG A 402 O HOH A 665 1555 1555 2.24 LINK O GLY G 41 CA CA G 401 1555 1555 2.35 LINK OD2 ASP G 42 CA CA G 401 1555 1555 2.45 LINK OE1 GLU G 73 CA CA G 401 1555 1555 2.63 LINK OE2 GLU G 73 CA CA G 401 1555 1555 2.36 LINK O VAL G 121 CA CA G 401 1555 1555 2.34 LINK CA CA G 401 O HOH G 418 1555 1555 2.31 LINK CA CA G 401 O HOH G 430 1555 1555 2.39 SITE 1 AC1 5 ATP A 401 HOH A 460 HOH A 466 HOH A 651 SITE 2 AC1 5 HOH A 665 SITE 1 AC2 3 LYS A 238 ARG A 254 HOH A 690 SITE 1 AC3 3 MET A 269 GLU A 270 SER A 271 SITE 1 AC4 9 GLY A 308 ILE A 309 ALA A 310 ASP A 311 SITE 2 AC4 9 HOH A 438 HOH A 486 HOH A 542 HOH A 625 SITE 3 AC4 9 LYS G 13 SITE 1 AC5 10 ASP A 157 GLY A 182 ARG A 183 THR A 186 SITE 2 AC5 10 ARG A 206 ARG A 210 LYS A 213 ATP A 401 SITE 3 AC5 10 HOH A 695 HOH A 699 SITE 1 AC6 7 ARG A 147 LYS A 328 ILE A 330 HOH A 524 SITE 2 AC6 7 HOH A 537 ARG G 96 GOL G 404 SITE 1 AC7 6 ARG A 62 THR A 202 THR A 203 ALA A 204 SITE 2 AC7 6 HOH A 570 HOH A 573 SITE 1 AC8 3 PRO A 112 LYS A 113 HOH A 692 SITE 1 AC9 3 ASN A 78 TRP A 79 ASP A 80 SITE 1 BC1 4 THR A 66 LEU A 67 HOH A 575 HOH A 578 SITE 1 BC2 7 ASN G 56 SER G 70 GLN G 71 ARG G 91 SITE 2 BC2 7 HOH G 483 HOH G 518 HOH G 533 SITE 1 BC3 6 GLY G 41 ASP G 42 GLU G 73 VAL G 121 SITE 2 BC3 6 HOH G 418 HOH G 430 SITE 1 BC4 29 GLY A 13 SER A 14 GLY A 15 MET A 16 SITE 2 BC4 29 LYS A 18 GLY A 156 ASP A 157 GLY A 182 SITE 3 BC4 29 ARG A 210 LYS A 213 GLU A 214 GLY A 301 SITE 4 BC4 29 GLY A 302 THR A 303 MET A 305 PHE A 306 SITE 5 BC4 29 LYS A 336 MG A 402 SO4 A 406 HOH A 416 SITE 6 BC4 29 HOH A 435 HOH A 442 HOH A 460 HOH A 466 SITE 7 BC4 29 HOH A 467 HOH A 485 HOH A 508 HOH A 637 SITE 8 BC4 29 HOH A 665 SITE 1 BC5 4 ASP A 24 ARG A 28 HOH A 693 HOH A 707 SITE 1 BC6 2 ARG A 37 LYS A 84 SITE 1 BC7 3 SER G 103 ALA G 104 THR G 105 SITE 1 BC8 8 ASN A 296 HOH A 420 HOH A 537 ARG G 96 SITE 2 BC8 8 HOH G 413 HOH G 433 HOH G 443 HOH G 510 SITE 1 BC9 8 SO4 A 407 HOH A 453 LEU G 65 GLY G 66 SITE 2 BC9 8 ASN G 67 CYS G 69 VAL G 98 HOH G 415 CRYST1 178.423 69.045 56.540 90.00 104.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005605 0.000000 0.001418 0.00000 SCALE2 0.000000 0.014483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018244 0.00000