PDB Short entry for 3CU8 HEADER PROTEIN BINDING, SIGNALING PROTEIN 16-APR-08 3CU8 TITLE IMPAIRED BINDING OF 14-3-3 TO RAF1 IS LINKED TO NOONAN AND LEOPARD TITLE 2 SYNDROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 14-3-3 ZETA ADAPTER PROTEIN, PROTEIN KINASE C INHIBITOR COMPND 5 PROTEIN 1, KCIP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 9 CHAIN: P, Q; COMPND 10 FRAGMENT: PHOSPHORYLATED CRAF1 PEPTIDE; COMPND 11 SYNONYM: RAF-1, C-RAF, CRAF; COMPND 12 EC: 2.7.11.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: RAF1PSER259 PEPTIDE (NH2-255QRSTPSTPNVHA265-COOH) WAS SOURCE 15 SYNTHESIZED BY BIOSYNTAN (BERLIN, GERMANY). KEYWDS 14-3-3, ZETA, ADAPTER PROTEIN, CRAF1, NOONAN SYNDROME, LEOPARD KEYWDS 2 SYNDROME, PHOSPHOPROTEIN, PROTEIN BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.SCHUMACHER,M.WEYAND,J.KUHLMANN,C.OTTMANN REVDAT 4 25-OCT-17 3CU8 1 REMARK REVDAT 3 07-JUN-17 3CU8 1 JRNL REVDAT 2 13-JUL-11 3CU8 1 VERSN REVDAT 1 05-MAY-09 3CU8 0 JRNL AUTH M.MOLZAN,B.SCHUMACHER,C.OTTMANN,A.BALJULS,L.POLZIEN, JRNL AUTH 2 M.WEYAND,P.THIEL,R.ROSE,M.ROSE,P.KUHENNE,M.KAISER,U.R.RAPP, JRNL AUTH 3 J.KUHLMANN,C.OTTMANN JRNL TITL IMPAIRED BINDING OF 14-3-3 TO C-RAF IN NOONAN SYNDROME JRNL TITL 2 SUGGESTS NEW APPROACHES IN DISEASES WITH INCREASED RAS JRNL TITL 3 SIGNALING. JRNL REF MOL. CELL. BIOL. V. 30 4698 2010 JRNL REFN ESSN 1098-5549 JRNL PMID 20679480 JRNL DOI 10.1128/MCB.01636-09 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1353 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1844 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 1.96000 REMARK 3 B33 (A**2) : -1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.344 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3797 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5126 ; 1.972 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 6.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;38.316 ;25.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;20.664 ;15.043 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2829 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 0.958 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3788 ; 1.861 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1429 ; 3.422 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1336 ; 5.431 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9870 0.8126 6.4076 REMARK 3 T TENSOR REMARK 3 T11: -0.0797 T22: -0.1041 REMARK 3 T33: -0.1243 T12: -0.0124 REMARK 3 T13: 0.0011 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.6009 L22: 1.5934 REMARK 3 L33: 1.5259 L12: -0.2666 REMARK 3 L13: 0.9030 L23: -0.2522 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.0250 S13: 0.1144 REMARK 3 S21: 0.1361 S22: 0.0275 S23: -0.1820 REMARK 3 S31: -0.2632 S32: 0.1223 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5742 1.6380 -10.4565 REMARK 3 T TENSOR REMARK 3 T11: -0.1315 T22: -0.1065 REMARK 3 T33: -0.0232 T12: 0.0953 REMARK 3 T13: 0.0162 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.2591 L22: 1.6324 REMARK 3 L33: 1.6139 L12: 0.4672 REMARK 3 L13: 0.4483 L23: 0.2643 REMARK 3 S TENSOR REMARK 3 S11: -0.0954 S12: 0.0453 S13: 0.1502 REMARK 3 S21: -0.0206 S22: 0.0016 S23: 0.2392 REMARK 3 S31: -0.1931 S32: -0.2083 S33: 0.0938 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 256 P 264 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7058 -5.7547 6.4714 REMARK 3 T TENSOR REMARK 3 T11: -0.0653 T22: -0.0303 REMARK 3 T33: -0.0348 T12: -0.0142 REMARK 3 T13: -0.0084 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 9.1247 L22: 8.0934 REMARK 3 L33: 6.5899 L12: -2.8817 REMARK 3 L13: -5.8534 L23: 1.2425 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.0922 S13: 0.1091 REMARK 3 S21: 0.0971 S22: 0.1209 S23: 0.1904 REMARK 3 S31: -0.1622 S32: -0.0754 S33: -0.0802 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 256 Q 263 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6645 -5.6475 -7.4705 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.0150 REMARK 3 T33: 0.0062 T12: 0.0292 REMARK 3 T13: 0.0341 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 9.5247 L22: 6.0034 REMARK 3 L33: 2.0062 L12: 3.0463 REMARK 3 L13: -4.0686 L23: -2.2037 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.1826 S13: -0.2582 REMARK 3 S21: 0.1808 S22: -0.3923 S23: -0.1237 REMARK 3 S31: -0.0416 S32: 0.4381 S33: 0.4675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97809 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR, SAGITTAL- REMARK 200 HORIZONTAL; DYNAMICALLY BENDABLE REMARK 200 MIRROR, MERIDIONAL-VERTICAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.950 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.20440 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M (SODIUM PROPIONATE, SODIUM REMARK 280 CACODYLATE, BIS-TRIS PROPANE), 27% PEG 1500, 2MM DTT, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 231 REMARK 465 THR A 232 REMARK 465 GLN A 233 REMARK 465 GLY A 234 REMARK 465 ASP A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 GLY B 71 REMARK 465 ALA B 72 REMARK 465 ASP B 231 REMARK 465 THR B 232 REMARK 465 GLN B 233 REMARK 465 GLY B 234 REMARK 465 ASP B 235 REMARK 465 GLU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 ALA B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 GLY B 242 REMARK 465 GLY B 243 REMARK 465 GLU B 244 REMARK 465 ASN B 245 REMARK 465 HIS Q 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 68 CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 75 NZ REMARK 470 GLN B 77 CD OE1 NE2 REMARK 470 ARG B 80 CD NE CZ NH1 NH2 REMARK 470 ASP B 136 CG OD1 OD2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 LYS B 157 CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -32.48 -31.83 REMARK 500 GLU A 70 117.52 -34.71 REMARK 500 ALA A 72 55.74 28.13 REMARK 500 PHE A 104 -58.30 -128.39 REMARK 500 TYR A 211 -57.64 -22.15 REMARK 500 GLU B 31 6.09 -68.83 REMARK 500 GLN B 67 78.36 -102.27 REMARK 500 LYS B 68 14.76 163.37 REMARK 500 ALA B 112 -55.98 -27.75 REMARK 500 ALA B 134 -167.58 -118.26 REMARK 500 SER B 184 77.29 -116.61 REMARK 500 GLU B 202 35.16 -146.21 REMARK 500 ASP B 204 -162.59 -46.08 REMARK 500 THR B 205 -7.08 52.11 REMARK 500 THR B 229 59.11 -101.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 70 GLY A 71 -144.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Q 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 247 DBREF 3CU8 A 1 245 UNP P63104 1433Z_HUMAN 1 245 DBREF 3CU8 B 1 245 UNP P63104 1433Z_HUMAN 1 245 DBREF 3CU8 P 256 264 UNP P04049 RAF1_HUMAN 256 264 DBREF 3CU8 Q 256 264 UNP P04049 RAF1_HUMAN 256 264 SEQRES 1 A 245 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 A 245 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 A 245 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 A 245 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 A 245 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 A 245 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 A 245 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 A 245 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 A 245 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 A 245 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 A 245 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 A 245 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 A 245 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 A 245 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 A 245 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 A 245 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 A 245 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 A 245 ARG ASP ASN LEU THR LEU TRP THR SER ASP THR GLN GLY SEQRES 19 A 245 ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU ASN SEQRES 1 B 245 MET ASP LYS ASN GLU LEU VAL GLN LYS ALA LYS LEU ALA SEQRES 2 B 245 GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA CYS MET SEQRES 3 B 245 LYS SER VAL THR GLU GLN GLY ALA GLU LEU SER ASN GLU SEQRES 4 B 245 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL VAL SEQRES 5 B 245 GLY ALA ARG ARG SER SER TRP ARG VAL VAL SER SER ILE SEQRES 6 B 245 GLU GLN LYS THR GLU GLY ALA GLU LYS LYS GLN GLN MET SEQRES 7 B 245 ALA ARG GLU TYR ARG GLU LYS ILE GLU THR GLU LEU ARG SEQRES 8 B 245 ASP ILE CYS ASN ASP VAL LEU SER LEU LEU GLU LYS PHE SEQRES 9 B 245 LEU ILE PRO ASN ALA SER GLN ALA GLU SER LYS VAL PHE SEQRES 10 B 245 TYR LEU LYS MET LYS GLY ASP TYR TYR ARG TYR LEU ALA SEQRES 11 B 245 GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY ILE VAL ASP SEQRES 12 B 245 GLN SER GLN GLN ALA TYR GLN GLU ALA PHE GLU ILE SER SEQRES 13 B 245 LYS LYS GLU MET GLN PRO THR HIS PRO ILE ARG LEU GLY SEQRES 14 B 245 LEU ALA LEU ASN PHE SER VAL PHE TYR TYR GLU ILE LEU SEQRES 15 B 245 ASN SER PRO GLU LYS ALA CYS SER LEU ALA LYS THR ALA SEQRES 16 B 245 PHE ASP GLU ALA ILE ALA GLU LEU ASP THR LEU SER GLU SEQRES 17 B 245 GLU SER TYR LYS ASP SER THR LEU ILE MET GLN LEU LEU SEQRES 18 B 245 ARG ASP ASN LEU THR LEU TRP THR SER ASP THR GLN GLY SEQRES 19 B 245 ASP GLU ALA GLU ALA GLY GLU GLY GLY GLU ASN SEQRES 1 P 9 ARG SER THR SEP THR PRO ASN VAL HIS SEQRES 1 Q 9 ARG SER THR SEP THR PRO ASN VAL HIS MODRES 3CU8 SEP P 259 SER PHOSPHOSERINE MODRES 3CU8 SEP Q 259 SER PHOSPHOSERINE HET SEP P 259 10 HET SEP Q 259 10 HET MG A 246 1 HET PPI A 247 5 HET MG Q 1 1 HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM PPI PROPANOIC ACID HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 MG 2(MG 2+) FORMUL 6 PPI C3 H6 O2 FORMUL 8 HOH *196(H2 O) HELIX 1 1 ASP A 2 ALA A 16 1 15 HELIX 2 2 ARG A 18 GLN A 32 1 15 HELIX 3 3 SER A 37 THR A 69 1 33 HELIX 4 4 ALA A 72 PHE A 104 1 33 HELIX 5 5 GLN A 111 VAL A 132 1 22 HELIX 6 6 GLY A 135 MET A 160 1 26 HELIX 7 7 HIS A 164 ILE A 181 1 18 HELIX 8 8 SER A 184 ALA A 201 1 18 HELIX 9 9 GLU A 202 LEU A 206 5 5 HELIX 10 10 SER A 210 THR A 229 1 20 HELIX 11 11 ASP B 2 GLU B 17 1 16 HELIX 12 12 ARG B 18 GLU B 31 1 14 HELIX 13 13 SER B 37 GLN B 67 1 31 HELIX 14 14 GLU B 73 PHE B 104 1 32 HELIX 15 15 PHE B 104 ALA B 109 1 6 HELIX 16 16 GLN B 111 GLU B 131 1 21 HELIX 17 17 ASP B 136 MET B 160 1 25 HELIX 18 18 HIS B 164 ILE B 181 1 18 HELIX 19 19 SER B 184 ALA B 201 1 18 HELIX 20 20 SER B 210 THR B 229 1 20 LINK C THR P 258 N SEP P 259 1555 1555 1.32 LINK C SEP P 259 N THR P 260 1555 1555 1.31 LINK C THR Q 258 N SEP Q 259 1555 1555 1.32 LINK C SEP Q 259 N THR Q 260 1555 1555 1.32 CISPEP 1 GLY A 71 ALA A 72 0 -1.05 CISPEP 2 VAL P 263 HIS P 264 0 -22.16 SITE 1 AC1 2 LYS A 49 SEP P 259 SITE 1 AC2 4 LYS B 49 ASN B 173 SEP Q 259 THR Q 260 SITE 1 AC3 4 GLN A 219 ARG A 222 PHE B 196 ARG B 222 CRYST1 72.400 83.840 111.650 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008957 0.00000