PDB Short entry for 3CYZ HEADER PHEROMONE BINDING PROTEIN 27-APR-08 3CYZ TITLE DIMERIC CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM APIS TITLE 2 MELLIFERA IN COMPLEX WITH 9-KETO-2(E)-DECENOIC ACID AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN ASP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIL-D2 KEYWDS HONEYBEE, APIS MELLIFERA, PHEROMONE BINDING PROTEIN, SIGNAL KEYWDS 2 TRANSDUCTION, QUEEN MANDIBULAR PHEROMONE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 5 01-NOV-23 3CYZ 1 REMARK LINK REVDAT 4 13-JUL-11 3CYZ 1 VERSN REVDAT 3 28-JUL-09 3CYZ 1 JRNL REVDAT 2 16-JUN-09 3CYZ 1 JRNL REVDAT 1 28-APR-09 3CYZ 0 JRNL AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, JRNL AUTH 2 V.CAMPANACCI,M.TEGONI,C.CAMBILLAU JRNL TITL QUEEN BEE PHEROMONE BINDING PROTEIN PH-INDUCED DOMAIN JRNL TITL 2 SWAPPING FAVORS PHEROMONE RELEASE JRNL REF J.MOL.BIOL. V. 390 981 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19481550 JRNL DOI 10.1016/J.JMB.2009.05.067 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 20184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1107 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1953 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1299 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2663 ; 1.413 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3219 ; 1.028 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 4.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;33.804 ;27.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;14.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2174 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 328 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1379 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 958 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 942 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 270 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1536 ; 0.799 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 470 ; 0.209 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1954 ; 0.965 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 855 ; 1.835 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 700 ; 2.654 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 11 REMARK 3 RESIDUE RANGE : A 114 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3778 -8.0554 2.5707 REMARK 3 T TENSOR REMARK 3 T11: -0.0288 T22: 0.0011 REMARK 3 T33: -0.0186 T12: 0.0009 REMARK 3 T13: 0.0000 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 4.5636 L22: 4.1177 REMARK 3 L33: 3.2512 L12: 0.5582 REMARK 3 L13: -3.1655 L23: 0.8262 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: -0.0220 S13: -0.0211 REMARK 3 S21: -0.2176 S22: -0.0399 S23: -0.1719 REMARK 3 S31: -0.1858 S32: 0.2535 S33: -0.1136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 11 REMARK 3 RESIDUE RANGE : B 114 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4999 -9.8961 -24.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0045 REMARK 3 T33: 0.0471 T12: -0.0202 REMARK 3 T13: 0.0435 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.5691 L22: 4.4804 REMARK 3 L33: 7.0190 L12: -0.3914 REMARK 3 L13: -0.8781 L23: 1.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.0201 S13: -0.0023 REMARK 3 S21: -0.2432 S22: 0.1760 S23: -0.3026 REMARK 3 S31: 0.2146 S32: 0.3517 S33: -0.0580 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7278 -1.2771 -5.0697 REMARK 3 T TENSOR REMARK 3 T11: -0.0395 T22: -0.0297 REMARK 3 T33: -0.0227 T12: 0.0055 REMARK 3 T13: -0.0027 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0218 L22: 0.6134 REMARK 3 L33: 1.2106 L12: -0.0859 REMARK 3 L13: -0.0599 L23: -0.3007 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.0583 S13: -0.0279 REMARK 3 S21: 0.0457 S22: 0.0369 S23: -0.0535 REMARK 3 S31: -0.0791 S32: -0.0110 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4455 -17.1990 -22.2522 REMARK 3 T TENSOR REMARK 3 T11: -0.0293 T22: -0.0325 REMARK 3 T33: -0.0323 T12: -0.0108 REMARK 3 T13: 0.0067 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.3676 L22: 0.7996 REMARK 3 L33: 0.5626 L12: -0.2362 REMARK 3 L13: 0.1024 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0010 S13: 0.0299 REMARK 3 S21: -0.0822 S22: 0.0106 S23: -0.0219 REMARK 3 S31: -0.0370 S32: 0.0255 S33: -0.0108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : CYLINDRICAL GAZING INCIDENCE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 84.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : 0.45700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3BJH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS, REMARK 280 15% PEG8000, PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.14250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.05650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.05650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.14250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 TRP B 4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 123 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 277 O REMARK 620 2 HOH A 278 O 85.3 REMARK 620 3 HOH A 279 O 85.9 88.7 REMARK 620 4 HOH A 280 O 176.9 92.2 92.3 REMARK 620 5 HOH B 243 O 92.8 176.3 94.4 89.8 REMARK 620 6 HOH B 244 O 96.2 91.4 177.9 85.6 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9OD A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9OD B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9OD B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 124 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H8V RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN AT PH 5.5 REMARK 900 RELATED ID: 3CDN RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN AT PH 4.0 REMARK 900 RELATED ID: 3BJH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE N BUTYL BENZENE SULFONAMIDE AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3CAB RELATED DB: PDB REMARK 900 THE SAME PROTEIN SOAKED AT PH 7.0 REMARK 900 RELATED ID: 3BFA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR PHEROMONE AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3BFB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC ACID AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3BFH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE HEXADECANOIC ACID AT PH 5.5 REMARK 900 RELATED ID: 3CZ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR PHEROMONE AT REMARK 900 PH 7.0 REMARK 900 RELATED ID: 3CZ1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE N BUTYL BENZENE SULFONAMIDE AT REMARK 900 PH 7.0 REMARK 900 RELATED ID: 3CZ2 RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN AT PH 7.0 DBREF 3CYZ A 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 DBREF 3CYZ B 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 SEQRES 1 A 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 A 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 A 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 A 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 A 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 A 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 A 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 A 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 A 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 A 119 VAL ILE SEQRES 1 B 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 B 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 B 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 B 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 B 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 B 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 B 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 B 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 B 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 B 119 VAL ILE HET 9OD A 124 13 HET CL A 120 1 HET CL A 121 1 HET CL A 122 1 HET MG A 123 1 HET 9OD B 121 13 HET 9OD B 122 13 HET CL B 120 1 HET GOL B 123 6 HET GOL B 124 6 HETNAM 9OD (2Z)-9-OXODEC-2-ENOIC ACID HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN 9OD 9-KETO-2(E)-DECENOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 9OD 3(C10 H16 O3) FORMUL 4 CL 4(CL 1-) FORMUL 7 MG MG 2+ FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *299(H2 O) HELIX 1 1 LEU A 12 GLY A 25 1 14 HELIX 2 2 THR A 27 LYS A 36 1 10 HELIX 3 3 GLU A 42 ALA A 55 1 14 HELIX 4 4 ASP A 66 LEU A 74 1 9 HELIX 5 5 PRO A 75 GLN A 77 5 3 HELIX 6 6 LEU A 78 LEU A 90 1 13 HELIX 7 7 ASP A 96 ALA A 112 1 17 HELIX 8 8 LEU B 12 GLY B 25 1 14 HELIX 9 9 THR B 27 LYS B 36 1 10 HELIX 10 10 GLU B 42 PHE B 56 1 15 HELIX 11 11 ASP B 66 LEU B 73 1 8 HELIX 12 12 LEU B 74 GLN B 77 5 4 HELIX 13 13 LEU B 78 LEU B 90 1 13 HELIX 14 14 ASP B 96 ALA B 112 1 17 SHEET 1 A 2 GLU A 8 ASP A 11 0 SHEET 2 A 2 VAL B 115 VAL B 118 1 O TRP B 116 N PHE A 10 SHEET 1 B 2 VAL A 115 VAL A 118 0 SHEET 2 B 2 GLU B 8 ASP B 11 1 O PHE B 10 N TRP A 116 SSBOND 1 CYS A 20 CYS A 51 1555 1555 2.02 SSBOND 2 CYS A 47 CYS A 98 1555 1555 2.04 SSBOND 3 CYS A 89 CYS A 107 1555 1555 2.03 SSBOND 4 CYS B 20 CYS B 51 1555 1555 2.06 SSBOND 5 CYS B 47 CYS B 98 1555 1555 2.04 SSBOND 6 CYS B 89 CYS B 107 1555 1555 2.01 LINK MG MG A 123 O HOH A 277 1555 1555 2.14 LINK MG MG A 123 O HOH A 278 1555 1555 2.14 LINK MG MG A 123 O HOH A 279 1555 1555 2.15 LINK MG MG A 123 O HOH A 280 1555 1555 2.05 LINK MG MG A 123 O HOH B 243 1555 1555 2.17 LINK MG MG A 123 O HOH B 244 1555 1555 2.10 CISPEP 1 LEU A 90 PRO A 91 0 -2.04 CISPEP 2 LEU B 90 PRO B 91 0 -1.43 SITE 1 AC1 5 HIS A 24 HOH A 165 HOH A 202 SER B 93 SITE 2 AC1 5 GLY B 94 SITE 1 AC2 4 HOH A 159 TYR B 102 HOH B 130 HOH B 213 SITE 1 AC3 5 VAL A 65 PRO A 91 THR A 92 HOH A 168 SITE 2 AC3 5 HOH A 208 SITE 1 AC4 6 HOH A 277 HOH A 278 HOH A 279 HOH A 280 SITE 2 AC4 6 HOH B 243 HOH B 244 SITE 1 AC5 5 ASN B 64 VAL B 65 PRO B 91 THR B 92 SITE 2 AC5 5 HOH B 195 SITE 1 AC6 6 MET A 49 MET A 86 PHE A 117 ILE A 119 SITE 2 AC6 6 HOH A 214 HOH A 285 SITE 1 AC7 5 LEU B 53 VAL B 85 ALA B 112 PHE B 117 SITE 2 AC7 5 9OD B 122 SITE 1 AC8 12 LYS B 17 ILE B 31 ASP B 35 TYR B 48 SITE 2 AC8 12 MET B 49 LEU B 52 LEU B 104 ALA B 105 SITE 3 AC8 12 ILE B 119 9OD B 121 HOH B 212 HOH B 249 SITE 1 AC9 5 GLU B 67 GLN B 83 MET B 86 GLY B 87 SITE 2 AC9 5 LEU B 90 SITE 1 BC1 3 GLU A 15 LEU B 78 HOH B 234 CRYST1 36.285 75.555 84.113 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011889 0.00000