PDB Short entry for 3D10 HEADER METAL BINDING PROTEIN 02-MAY-08 3D10 TITLE CRYSTAL STRUCTURE OF S100B IN THE CALCIUM AND ZINC LOADED STATE AT PH TITLE 2 10.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN B, S-100 PROTEIN SUBUNIT BETA, COMPND 5 S-100 PROTEIN BETA CHAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: S100B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEMEX-2 KEYWDS S100B, S100, EF-HAND, METAL-BINDING, NUCLEUS, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.OSTENDORP,J.DIEZ,C.W.HEIZMANN,G.FRITZ REVDAT 5 30-AUG-23 3D10 1 REMARK LINK REVDAT 4 13-JUL-11 3D10 1 VERSN REVDAT 3 04-MAY-11 3D10 1 JRNL REVDAT 2 24-NOV-10 3D10 1 JRNL REVDAT 1 14-APR-09 3D10 0 JRNL AUTH T.OSTENDORP,J.DIEZ,C.W.HEIZMANN,G.FRITZ JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN S100B IN THE ZINC- AND JRNL TITL 2 CALCIUM-LOADED STATE AT THREE PH VALUES REVEAL ZINC LIGAND JRNL TITL 3 SWAPPING. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1813 1083 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 20950652 JRNL DOI 10.1016/J.BBAMCR.2010.10.006 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 20791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1456 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1534 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2050 ; 1.907 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 185 ; 5.371 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.069 ;26.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ;16.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.505 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1152 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 829 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1048 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 114 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 20 ; 0.177 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 955 ; 1.325 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1469 ; 1.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 642 ; 2.873 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 4.012 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4909 1.3063 11.2172 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0611 REMARK 3 T33: 0.1645 T12: 0.0316 REMARK 3 T13: 0.0476 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.5060 L22: 1.3062 REMARK 3 L33: 3.7077 L12: 0.1347 REMARK 3 L13: 0.9526 L23: -0.5408 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.6434 S13: 0.1232 REMARK 3 S21: 0.2013 S22: -0.0902 S23: 0.1279 REMARK 3 S31: -0.1913 S32: -0.1825 S33: 0.1229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8559 -4.2781 18.8157 REMARK 3 T TENSOR REMARK 3 T11: 0.0044 T22: 0.1605 REMARK 3 T33: 0.1323 T12: 0.0186 REMARK 3 T13: -0.0149 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.8770 L22: 9.6249 REMARK 3 L33: 8.0327 L12: 1.4541 REMARK 3 L13: 1.3019 L23: -3.6117 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.1136 S13: -0.0777 REMARK 3 S21: 0.0439 S22: 0.0166 S23: -0.0879 REMARK 3 S31: 0.0469 S32: 0.2555 S33: 0.0143 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8553 -8.1853 4.4109 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0323 REMARK 3 T33: 0.2200 T12: 0.0146 REMARK 3 T13: -0.0024 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.7703 L22: 11.7509 REMARK 3 L33: 6.6904 L12: 4.0985 REMARK 3 L13: 1.1978 L23: 4.9513 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: -0.2749 S13: -0.4316 REMARK 3 S21: -0.1076 S22: 0.1228 S23: -0.1249 REMARK 3 S31: 0.3973 S32: 0.1502 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2938 -7.4914 -0.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.0019 REMARK 3 T33: 0.3431 T12: -0.0456 REMARK 3 T13: 0.0019 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 7.3622 L22: 4.6720 REMARK 3 L33: 34.1955 L12: -0.9621 REMARK 3 L13: -4.1894 L23: 10.4515 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: -0.2335 S13: -0.0793 REMARK 3 S21: -0.0363 S22: -0.4770 S23: 0.3899 REMARK 3 S31: 0.5034 S32: -1.2512 S33: 0.3997 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9521 -2.3873 -15.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0826 REMARK 3 T33: 0.1284 T12: 0.0473 REMARK 3 T13: -0.0083 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 4.0894 L22: 2.9747 REMARK 3 L33: 6.2308 L12: -0.9737 REMARK 3 L13: -1.3903 L23: 0.4139 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: 0.3216 S13: -0.1056 REMARK 3 S21: -0.2321 S22: -0.0523 S23: -0.0893 REMARK 3 S31: 0.3046 S32: 0.4635 S33: -0.0354 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4895 3.2555 -3.6774 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.0800 REMARK 3 T33: 0.1958 T12: 0.0000 REMARK 3 T13: 0.0140 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.4574 L22: 16.4952 REMARK 3 L33: 8.7640 L12: -4.4098 REMARK 3 L13: -0.9959 L23: 7.4894 REMARK 3 S TENSOR REMARK 3 S11: 0.1671 S12: 0.1796 S13: 0.2994 REMARK 3 S21: 0.2350 S22: -0.3580 S23: -0.0908 REMARK 3 S31: -0.0367 S32: 0.1575 S33: 0.1909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0089 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2H61 CHAIN A AND B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M CAPS PH 10.0, 23% PEG5000MME, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 46 NZ LYS A 48 2.15 REMARK 500 O HOH A 115 O HOH A 167 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 PGE B 94 O HOH A 124 2555 2.13 REMARK 500 O4 PGE B 94 O HOH A 125 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 94 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 25 NE2 120.1 REMARK 620 3 HIS B 85 NE2 106.4 97.9 REMARK 620 4 GLU B 89 OE1 108.7 123.2 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 93 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 GLU A 21 O 104.5 REMARK 620 3 ASP A 23 O 77.2 88.9 REMARK 620 4 LYS A 26 O 91.8 154.8 75.8 REMARK 620 5 GLU A 31 OE1 100.5 117.0 153.3 77.7 REMARK 620 6 GLU A 31 OE2 86.7 76.7 155.1 124.2 48.2 REMARK 620 7 HOH A 123 O 167.0 80.6 91.0 79.7 87.4 106.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 92 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ASP A 63 OD2 77.8 REMARK 620 3 ASP A 65 OD1 92.8 82.1 REMARK 620 4 GLU A 67 O 91.6 163.7 86.1 REMARK 620 5 GLU A 72 OE1 111.8 119.2 149.6 76.1 REMARK 620 6 GLU A 72 OE2 85.5 73.5 155.4 118.5 49.4 REMARK 620 7 HOH A 98 O 162.1 85.5 78.5 103.2 81.9 95.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 95 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 GLU A 89 OE2 103.4 REMARK 620 3 GLU A 89 OE1 82.5 53.7 REMARK 620 4 HIS B 15 NE2 103.2 92.9 146.1 REMARK 620 5 HIS B 25 NE2 90.7 138.7 91.1 121.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 92 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 O REMARK 620 2 GLU B 21 O 101.5 REMARK 620 3 ASP B 23 O 80.1 81.7 REMARK 620 4 LYS B 26 O 89.1 161.2 85.0 REMARK 620 5 GLU B 31 OE1 95.1 114.7 163.6 79.2 REMARK 620 6 GLU B 31 OE2 74.7 74.5 140.7 123.7 50.2 REMARK 620 7 HOH B 132 O 163.6 88.0 88.3 78.3 92.9 121.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 93 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD2 REMARK 620 2 ASP B 65 OD1 88.5 REMARK 620 3 GLU B 67 O 163.7 75.3 REMARK 620 4 GLU B 72 OE1 120.0 130.4 73.8 REMARK 620 5 GLU B 72 OE2 73.6 157.3 122.6 53.9 REMARK 620 6 HOH B 152 O 87.1 68.3 89.1 73.4 96.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 92 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 93 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 95 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S100B IN THE CALCIUM AND ZINC LOADED STATE AT REMARK 900 PH 9.0 REMARK 900 RELATED ID: 3DOY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S100B IN THE CALCIUM AND ZINC LOADED STATE AT REMARK 900 PH 6.5 REMARK 900 RELATED ID: 2H61 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF HUMAN CA2+-LOADED S100B REMARK 900 RELATED ID: 1XYD RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF RAT ZINC-CALCIUM-S100B DBREF 3D10 A 0 91 UNP P04271 S100B_HUMAN 1 92 DBREF 3D10 B 0 91 UNP P04271 S100B_HUMAN 1 92 SEQRES 1 A 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 A 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 A 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 A 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 A 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 A 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 A 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 A 92 GLU SEQRES 1 B 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 B 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 B 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 B 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 B 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 B 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 B 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 B 92 GLU HET CA A 92 1 HET CA A 93 1 HET ZN A 94 1 HET ZN A 95 1 HET CA B 92 1 HET CA B 93 1 HET PGE B 94 10 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 CA 4(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 9 PGE C6 H14 O4 FORMUL 10 HOH *152(H2 O) HELIX 1 1 SER A 1 GLY A 19 1 19 HELIX 2 2 LYS A 28 LEU A 40 1 13 HELIX 3 3 GLU A 49 ASP A 61 1 13 HELIX 4 4 ASP A 69 PHE A 88 1 20 HELIX 5 5 SER B 1 GLY B 19 1 19 HELIX 6 6 LYS B 28 LEU B 40 1 13 HELIX 7 7 GLU B 49 ASP B 61 1 13 HELIX 8 8 ASP B 69 PHE B 88 1 20 LINK NE2 HIS A 15 ZN ZN A 94 1555 1555 2.17 LINK O SER A 18 CA CA A 93 1555 1555 2.31 LINK O GLU A 21 CA CA A 93 1555 1555 2.31 LINK O ASP A 23 CA CA A 93 1555 1555 2.67 LINK NE2 HIS A 25 ZN ZN A 94 1555 1555 1.94 LINK O LYS A 26 CA CA A 93 1555 1555 2.48 LINK OE1 GLU A 31 CA CA A 93 1555 1555 2.76 LINK OE2 GLU A 31 CA CA A 93 1555 1555 2.73 LINK OD1 ASP A 61 CA CA A 92 1555 1555 2.27 LINK OD2 ASP A 63 CA CA A 92 1555 1555 2.27 LINK OD1 ASP A 65 CA CA A 92 1555 1555 2.39 LINK O GLU A 67 CA CA A 92 1555 1555 2.24 LINK OE1 GLU A 72 CA CA A 92 1555 1555 2.44 LINK OE2 GLU A 72 CA CA A 92 1555 1555 2.65 LINK NE2 HIS A 85 ZN ZN A 95 1555 1555 2.12 LINK OE2 GLU A 89 ZN ZN A 95 1555 1555 2.28 LINK OE1 GLU A 89 ZN ZN A 95 1555 1555 2.63 LINK CA CA A 92 O HOH A 98 1555 1555 2.30 LINK CA CA A 93 O HOH A 123 1555 1555 2.37 LINK ZN ZN A 94 NE2 HIS B 85 1555 1555 2.20 LINK ZN ZN A 94 OE1 GLU B 89 1555 1555 2.64 LINK ZN ZN A 95 NE2 HIS B 15 1555 1555 2.05 LINK ZN ZN A 95 NE2 HIS B 25 1555 1555 1.85 LINK O SER B 18 CA CA B 92 1555 1555 2.31 LINK O GLU B 21 CA CA B 92 1555 1555 2.29 LINK O ASP B 23 CA CA B 92 1555 1555 2.39 LINK O LYS B 26 CA CA B 92 1555 1555 2.50 LINK OE1 GLU B 31 CA CA B 92 1555 1555 2.24 LINK OE2 GLU B 31 CA CA B 92 1555 1555 2.76 LINK OD2 ASP B 63 CA CA B 93 1555 1555 2.24 LINK OD1 ASP B 65 CA CA B 93 1555 1555 2.66 LINK O GLU B 67 CA CA B 93 1555 1555 2.34 LINK OE1 GLU B 72 CA CA B 93 1555 1555 2.39 LINK OE2 GLU B 72 CA CA B 93 1555 1555 2.45 LINK CA CA B 92 O HOH B 132 1555 1555 2.40 LINK CA CA B 93 O HOH B 152 1555 1555 2.74 CISPEP 1 GLU A 89 HIS A 90 0 -1.54 SITE 1 AC1 5 ASP A 61 ASP A 63 ASP A 65 GLU A 67 SITE 2 AC1 5 GLU A 72 SITE 1 AC2 5 SER A 18 GLU A 21 ASP A 23 LYS A 26 SITE 2 AC2 5 GLU A 31 SITE 1 AC3 5 SER B 18 GLU B 21 ASP B 23 LYS B 26 SITE 2 AC3 5 GLU B 31 SITE 1 AC4 5 ASP B 61 ASP B 63 ASP B 65 GLU B 67 SITE 2 AC4 5 GLU B 72 SITE 1 AC5 4 HIS A 15 HIS A 25 HIS B 85 GLU B 89 SITE 1 AC6 4 HIS A 85 GLU A 89 HIS B 15 HIS B 25 CRYST1 34.750 58.180 47.850 90.00 111.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028777 0.000000 0.011092 0.00000 SCALE2 0.000000 0.017188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022397 0.00000