PDB Short entry for 3D24 HEADER TRANSCRIPTION 07-MAY-08 3D24 TITLE CRYSTAL STRUCTURE OF LIGAND-BINDING DOMAIN OF ESTROGEN-RELATED TITLE 2 RECEPTOR ALPHA (ERRALPHA) IN COMPLEX WITH THE PEROXISOME TITLE 3 PROLIFERATORS-ACTIVATED RECEPTOR COACTIVATOR-1ALPHA BOX3 PEPTIDE TITLE 4 (PGC-1ALPHA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID HORMONE RECEPTOR ERR1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN: RESIDUES 278-519; COMPND 5 SYNONYM: ESTROGEN-RELATED RECEPTOR ALPHA, ERR-ALPHA, ESTROGEN COMPND 6 RECEPTOR-LIKE 1, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP B MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA COMPND 10 COACTIVATOR 1-ALPHA; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: RESIDUES 198-219; COMPND 13 SYNONYM: PPAR-GAMMA COACTIVATOR 1-ALPHA, PPARGC-1-ALPHA, PGC-1-ALPHA, COMPND 14 LIGAND EFFECT MODULATOR 6; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: ESRRA, ERR1, ESRL1, NR3B1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: SYNTHETIC PEPTIDE WITH THE SEQUENCE BASED ON THE SOURCE 12 FRAGMENT (RESIDUES 198-219) OF HUMAN PGC-1-ALPHA, UNIPROT ENTRY SOURCE 13 Q9UBK2 (PRGC1_HUMAN) KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, COACTIVATOR, DNA-BINDING, KEYWDS 2 METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, ZINC, ZINC-FINGER, POLYMORPHISM, RNA-BINDING, STRUCTURAL KEYWDS 4 GENOMICS, STRUCTURAL PROTEOMICS IN EUROPE, SPINE EXPDTA X-RAY DIFFRACTION AUTHOR D.MORAS,H.GRESCHIK,R.FLAIG,Y.SATO,N.ROCHEL,STRUCTURAL PROTEOMICS IN AUTHOR 2 EUROPE (SPINE) REVDAT 4 30-AUG-23 3D24 1 SEQADV REVDAT 3 24-FEB-09 3D24 1 VERSN REVDAT 2 29-JUL-08 3D24 1 JRNL REVDAT 1 10-JUN-08 3D24 0 JRNL AUTH H.GRESCHIK,M.ALTHAGE,R.FLAIG,Y.SATO,V.CHAVANT, JRNL AUTH 2 C.PELUSO-ILTIS,L.CHOULIER,P.CRONET,N.ROCHEL,R.SCHULE, JRNL AUTH 3 P.E.STROMSTEDT,D.MORAS JRNL TITL COMMUNICATION BETWEEN THE ERR{ALPHA} HOMODIMER INTERFACE AND JRNL TITL 2 THE PGC-1{ALPHA} BINDING SURFACE VIA THE HELIX 8-9 LOOP. JRNL REF J.BIOL.CHEM. V. 283 20220 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18441008 JRNL DOI 10.1074/JBC.M801920200 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 31872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1584 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.94500 REMARK 3 B22 (A**2) : 2.11900 REMARK 3 B33 (A**2) : 3.82600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.79700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BIJVOET DIFFERENCES WERE USED IN REMARK 3 PHASING REMARK 4 REMARK 4 3D24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1XB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 15% PEG 3350, REMARK 280 0.2 M MG(NO3)2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 171 REMARK 465 ARG A 172 REMARK 465 SER A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 GLY A 180 REMARK 465 PRO A 181 REMARK 465 GLY A 182 REMARK 465 LEU A 183 REMARK 465 VAL A 184 REMARK 465 PRO A 185 REMARK 465 ARG A 186 REMARK 465 GLY A 187 REMARK 465 SER A 188 REMARK 465 LYS A 189 REMARK 465 THR A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 PRO A 193 REMARK 465 PRO A 213 REMARK 465 ASP A 214 REMARK 465 PRO A 215 REMARK 465 ALA A 216 REMARK 465 GLY A 217 REMARK 465 PRO A 218 REMARK 465 ASP A 219 REMARK 465 GLY A 220 REMARK 465 HIS A 221 REMARK 465 LEU A 222 REMARK 465 ARG A 366 REMARK 465 ALA A 367 REMARK 465 GLY A 368 REMARK 465 PRO A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 371 REMARK 465 GLY A 372 REMARK 465 ALA A 373 REMARK 465 MET A 421 REMARK 465 MET A 422 REMARK 465 ASP A 423 REMARK 465 GLN B 198 REMARK 465 GLN B 199 REMARK 465 GLN B 200 REMARK 465 LYS B 201 REMARK 465 PRO B 202 REMARK 465 GLN B 203 REMARK 465 ARG B 204 REMARK 465 ASP B 218 REMARK 465 ASP B 219 REMARK 465 MET C 171 REMARK 465 ARG C 172 REMARK 465 SER C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 465 GLY C 180 REMARK 465 PRO C 181 REMARK 465 GLY C 182 REMARK 465 LEU C 183 REMARK 465 VAL C 184 REMARK 465 PRO C 185 REMARK 465 ARG C 186 REMARK 465 GLY C 187 REMARK 465 SER C 188 REMARK 465 LYS C 189 REMARK 465 THR C 190 REMARK 465 ALA C 191 REMARK 465 ASP C 214 REMARK 465 PRO C 215 REMARK 465 ALA C 216 REMARK 465 GLY C 217 REMARK 465 PRO C 218 REMARK 465 ASP C 219 REMARK 465 GLY C 220 REMARK 465 HIS C 221 REMARK 465 LEU C 222 REMARK 465 GLY C 368 REMARK 465 PRO C 369 REMARK 465 GLY C 370 REMARK 465 GLY C 371 REMARK 465 GLY C 372 REMARK 465 ALA C 373 REMARK 465 GLU C 374 REMARK 465 GLN D 198 REMARK 465 GLN D 199 REMARK 465 GLN D 200 REMARK 465 LYS D 201 REMARK 465 PRO D 202 REMARK 465 GLN D 203 REMARK 465 ARG D 204 REMARK 465 ASP D 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA C 192 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 529 O HOH C 529 2657 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 206 159.07 -48.04 REMARK 500 ALA A 224 -70.42 -111.18 REMARK 500 ALA A 300 3.03 -66.50 REMARK 500 ASP A 344 72.46 -101.15 REMARK 500 ALA A 364 5.09 -63.40 REMARK 500 HIS A 411 172.42 -53.84 REMARK 500 PRO B 206 99.64 -64.17 REMARK 500 CYS B 207 24.29 -157.83 REMARK 500 THR B 215 52.49 -114.49 REMARK 500 THR B 216 -157.56 -141.98 REMARK 500 PRO C 193 -179.21 -59.83 REMARK 500 VAL C 194 -1.75 -141.68 REMARK 500 MET C 212 -117.49 -119.05 REMARK 500 ALA C 224 -91.63 -37.63 REMARK 500 LEU C 290 86.46 -156.60 REMARK 500 CYS D 207 18.28 -146.81 REMARK 500 ASN D 217 66.77 -63.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IGBMC-0062-000 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1XB7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ERRALPHA LBD IN COMPLEX WITH A PGC-1ALPHA REMARK 900 PEPTIDE AT 2.5 A RESOLUTION DBREF 3D24 A 192 423 UNP P11474 ERR1_HUMAN 288 519 DBREF 3D24 B 198 219 UNP Q9UBK2 PRGC1_HUMAN 198 219 DBREF 3D24 C 192 423 UNP P11474 ERR1_HUMAN 288 519 DBREF 3D24 D 198 219 UNP Q9UBK2 PRGC1_HUMAN 198 219 SEQADV 3D24 MET A 171 UNP P11474 EXPRESSION TAG SEQADV 3D24 ARG A 172 UNP P11474 EXPRESSION TAG SEQADV 3D24 SER A 173 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 174 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 175 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 176 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 177 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 178 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS A 179 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY A 180 UNP P11474 EXPRESSION TAG SEQADV 3D24 PRO A 181 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY A 182 UNP P11474 EXPRESSION TAG SEQADV 3D24 LEU A 183 UNP P11474 EXPRESSION TAG SEQADV 3D24 VAL A 184 UNP P11474 EXPRESSION TAG SEQADV 3D24 PRO A 185 UNP P11474 EXPRESSION TAG SEQADV 3D24 ARG A 186 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY A 187 UNP P11474 EXPRESSION TAG SEQADV 3D24 SER A 188 UNP P11474 EXPRESSION TAG SEQADV 3D24 LYS A 189 UNP P11474 EXPRESSION TAG SEQADV 3D24 THR A 190 UNP P11474 EXPRESSION TAG SEQADV 3D24 ALA A 191 UNP P11474 EXPRESSION TAG SEQADV 3D24 MET C 171 UNP P11474 EXPRESSION TAG SEQADV 3D24 ARG C 172 UNP P11474 EXPRESSION TAG SEQADV 3D24 SER C 173 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 174 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 175 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 176 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 177 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 178 UNP P11474 EXPRESSION TAG SEQADV 3D24 HIS C 179 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY C 180 UNP P11474 EXPRESSION TAG SEQADV 3D24 PRO C 181 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY C 182 UNP P11474 EXPRESSION TAG SEQADV 3D24 LEU C 183 UNP P11474 EXPRESSION TAG SEQADV 3D24 VAL C 184 UNP P11474 EXPRESSION TAG SEQADV 3D24 PRO C 185 UNP P11474 EXPRESSION TAG SEQADV 3D24 ARG C 186 UNP P11474 EXPRESSION TAG SEQADV 3D24 GLY C 187 UNP P11474 EXPRESSION TAG SEQADV 3D24 SER C 188 UNP P11474 EXPRESSION TAG SEQADV 3D24 LYS C 189 UNP P11474 EXPRESSION TAG SEQADV 3D24 THR C 190 UNP P11474 EXPRESSION TAG SEQADV 3D24 ALA C 191 UNP P11474 EXPRESSION TAG SEQRES 1 A 253 MET ARG SER HIS HIS HIS HIS HIS HIS GLY PRO GLY LEU SEQRES 2 A 253 VAL PRO ARG GLY SER LYS THR ALA ALA PRO VAL ASN ALA SEQRES 3 A 253 LEU VAL SER HIS LEU LEU VAL VAL GLU PRO GLU LYS LEU SEQRES 4 A 253 TYR ALA MET PRO ASP PRO ALA GLY PRO ASP GLY HIS LEU SEQRES 5 A 253 PRO ALA VAL ALA THR LEU CYS ASP LEU PHE ASP ARG GLU SEQRES 6 A 253 ILE VAL VAL THR ILE SER TRP ALA LYS SER ILE PRO GLY SEQRES 7 A 253 PHE SER SER LEU SER LEU SER ASP GLN MET SER VAL LEU SEQRES 8 A 253 GLN SER VAL TRP MET GLU VAL LEU VAL LEU GLY VAL ALA SEQRES 9 A 253 GLN ARG SER LEU PRO LEU GLN ASP GLU LEU ALA PHE ALA SEQRES 10 A 253 GLU ASP LEU VAL LEU ASP GLU GLU GLY ALA ARG ALA ALA SEQRES 11 A 253 GLY LEU GLY GLU LEU GLY ALA ALA LEU LEU GLN LEU VAL SEQRES 12 A 253 ARG ARG LEU GLN ALA LEU ARG LEU GLU ARG GLU GLU TYR SEQRES 13 A 253 VAL LEU LEU LYS ALA LEU ALA LEU ALA ASN SER ASP SER SEQRES 14 A 253 VAL HIS ILE GLU ASP ALA GLU ALA VAL GLU GLN LEU ARG SEQRES 15 A 253 GLU ALA LEU HIS GLU ALA LEU LEU GLU TYR GLU ALA GLY SEQRES 16 A 253 ARG ALA GLY PRO GLY GLY GLY ALA GLU ARG ARG ARG ALA SEQRES 17 A 253 GLY ARG LEU LEU LEU THR LEU PRO LEU LEU ARG GLN THR SEQRES 18 A 253 ALA GLY LYS VAL LEU ALA HIS PHE TYR GLY VAL LYS LEU SEQRES 19 A 253 GLU GLY LYS VAL PRO MET HIS LYS LEU PHE LEU GLU MET SEQRES 20 A 253 LEU GLU ALA MET MET ASP SEQRES 1 B 22 GLN GLN GLN LYS PRO GLN ARG ARG PRO CYS SER GLU LEU SEQRES 2 B 22 LEU LYS TYR LEU THR THR ASN ASP ASP SEQRES 1 C 253 MET ARG SER HIS HIS HIS HIS HIS HIS GLY PRO GLY LEU SEQRES 2 C 253 VAL PRO ARG GLY SER LYS THR ALA ALA PRO VAL ASN ALA SEQRES 3 C 253 LEU VAL SER HIS LEU LEU VAL VAL GLU PRO GLU LYS LEU SEQRES 4 C 253 TYR ALA MET PRO ASP PRO ALA GLY PRO ASP GLY HIS LEU SEQRES 5 C 253 PRO ALA VAL ALA THR LEU CYS ASP LEU PHE ASP ARG GLU SEQRES 6 C 253 ILE VAL VAL THR ILE SER TRP ALA LYS SER ILE PRO GLY SEQRES 7 C 253 PHE SER SER LEU SER LEU SER ASP GLN MET SER VAL LEU SEQRES 8 C 253 GLN SER VAL TRP MET GLU VAL LEU VAL LEU GLY VAL ALA SEQRES 9 C 253 GLN ARG SER LEU PRO LEU GLN ASP GLU LEU ALA PHE ALA SEQRES 10 C 253 GLU ASP LEU VAL LEU ASP GLU GLU GLY ALA ARG ALA ALA SEQRES 11 C 253 GLY LEU GLY GLU LEU GLY ALA ALA LEU LEU GLN LEU VAL SEQRES 12 C 253 ARG ARG LEU GLN ALA LEU ARG LEU GLU ARG GLU GLU TYR SEQRES 13 C 253 VAL LEU LEU LYS ALA LEU ALA LEU ALA ASN SER ASP SER SEQRES 14 C 253 VAL HIS ILE GLU ASP ALA GLU ALA VAL GLU GLN LEU ARG SEQRES 15 C 253 GLU ALA LEU HIS GLU ALA LEU LEU GLU TYR GLU ALA GLY SEQRES 16 C 253 ARG ALA GLY PRO GLY GLY GLY ALA GLU ARG ARG ARG ALA SEQRES 17 C 253 GLY ARG LEU LEU LEU THR LEU PRO LEU LEU ARG GLN THR SEQRES 18 C 253 ALA GLY LYS VAL LEU ALA HIS PHE TYR GLY VAL LYS LEU SEQRES 19 C 253 GLU GLY LYS VAL PRO MET HIS LYS LEU PHE LEU GLU MET SEQRES 20 C 253 LEU GLU ALA MET MET ASP SEQRES 1 D 22 GLN GLN GLN LYS PRO GLN ARG ARG PRO CYS SER GLU LEU SEQRES 2 D 22 LEU LYS TYR LEU THR THR ASN ASP ASP FORMUL 5 HOH *272(H2 O) HELIX 1 1 ASN A 195 VAL A 204 1 10 HELIX 2 2 ALA A 224 ILE A 246 1 23 HELIX 3 3 SER A 253 LEU A 278 1 26 HELIX 4 4 GLU A 294 ALA A 300 1 7 HELIX 5 5 GLU A 304 ALA A 318 1 15 HELIX 6 6 GLU A 322 ASN A 336 1 15 HELIX 7 7 ASP A 344 ALA A 364 1 21 HELIX 8 8 GLU A 374 LEU A 383 1 10 HELIX 9 9 THR A 384 GLU A 405 1 22 HELIX 10 10 HIS A 411 ALA A 420 1 10 HELIX 11 11 CYS B 207 THR B 215 1 9 HELIX 12 12 ASN C 195 VAL C 204 1 10 HELIX 13 13 PRO C 223 SER C 245 1 23 HELIX 14 14 SER C 253 LEU C 278 1 26 HELIX 15 15 GLU C 294 GLY C 301 1 8 HELIX 16 16 GLU C 304 ARG C 320 1 17 HELIX 17 17 GLU C 322 ASN C 336 1 15 HELIX 18 18 ASP C 344 ALA C 364 1 21 HELIX 19 19 ARG C 376 LEU C 383 1 8 HELIX 20 20 THR C 384 GLU C 405 1 22 HELIX 21 21 HIS C 411 MET C 421 1 11 HELIX 22 22 CYS D 207 THR D 215 1 9 SHEET 1 A 2 GLU A 283 ALA A 287 0 SHEET 2 A 2 LEU A 290 ASP A 293 -1 O LEU A 290 N ALA A 287 SHEET 1 B 2 GLU C 283 ALA C 287 0 SHEET 2 B 2 LEU C 290 ASP C 293 -1 O LEU C 292 N LEU C 284 CISPEP 1 MET C 212 PRO C 213 0 -0.20 CRYST1 119.400 56.000 96.200 90.00 106.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008375 0.000000 0.002465 0.00000 SCALE2 0.000000 0.017857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010836 0.00000