PDB Short entry for 3D74 HEADER PHEROMONE BINDING PROTEIN 20-MAY-08 3D74 TITLE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN MUTANT D35A, FROM TITLE 2 APIS MELLIFERA, SOAKED AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN ASP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-144; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIL-D2 KEYWDS PHEROMONE BINDING PROTEIN, HONEY BEE, APIS MELLIFERA, SIGNAL KEYWDS 2 TRANSDUCTION, QUEEN MANDIBULAR PROTEIN, PH EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 5 01-NOV-23 3D74 1 REMARK REVDAT 4 10-NOV-21 3D74 1 REMARK SEQADV REVDAT 3 28-JUL-09 3D74 1 JRNL REVDAT 2 16-JUN-09 3D74 1 JRNL REVDAT 1 26-MAY-09 3D74 0 JRNL AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, JRNL AUTH 2 V.CAMPANACCI,M.TEGONI,C.CAMBILLAU JRNL TITL QUEEN BEE PHEROMONE BINDING PROTEIN PH-INDUCED DOMAIN JRNL TITL 2 SWAPPING FAVORS PHEROMONE RELEASE JRNL REF J.MOL.BIOL. V. 390 981 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19481550 JRNL DOI 10.1016/J.JMB.2009.05.067 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, REMARK 1 AUTH 2 M.TEGONI,C.CAMBILLAU REMARK 1 TITL THE PH DRIVEN DOMAIN-SWAPPING DIMERIZATION OF QUEEN BEE ASP1 REMARK 1 TITL 2 FAVOURS PHEROMONE RELEASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.61000 REMARK 3 B22 (A**2) : -2.30000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.610 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1930 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1253 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2637 ; 1.469 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3087 ; 1.004 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 9.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;37.550 ;27.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;12.851 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;19.016 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2146 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 465 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1250 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 973 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 878 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 0.881 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 475 ; 0.158 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1953 ; 0.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 831 ; 2.048 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 681 ; 2.509 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : OSMIC VACUUM REMARK 200 OPTICS : POLAR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3D73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M AMMONIUM SULFATE, 0.2M DI REMARK 280 -AMMONIUM PHOSPHATE, 20MM DI-SODIUM PHOSPHATE, PH7.0, CRYSTAL REMARK 280 WAS SOAKED IN THE SAME CONDITION AT PH5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.56650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.38450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.56650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.38450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 124 LIES ON A SPECIAL POSITION. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB B 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H8V RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME NATIVE PROTEIN AT PH 5.5 REMARK 900 RELATED ID: 3CDN RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME NATIVE PROTEIN SOAKED AT PH 4.0 REMARK 900 RELATED ID: 3BJH RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE AT PH 5.5 REMARK 900 RELATED ID: 3CAB RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE SOAKED AT PH 7.0 REMARK 900 RELATED ID: 3BFA RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR REMARK 900 PHEROMONE AT PH 5.5 REMARK 900 RELATED ID: 3BFB RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC REMARK 900 ACID AT PH 5.5 REMARK 900 RELATED ID: 3BFH RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE HEXADECANOIC ACID AT PH REMARK 900 5.5 REMARK 900 RELATED ID: 3CYZ RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC REMARK 900 ACID AT PH 7.0 REMARK 900 RELATED ID: 3CZ0 RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR REMARK 900 PHEROMONE AT PH 7.0 REMARK 900 RELATED ID: 3CZ1 RELATED DB: PDB REMARK 900 THE SAME NATIVE PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE AT PH 7.0 REMARK 900 RELATED ID: 3CZ2 RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME NATIVE PROTEIN AT PH 7.0 REMARK 900 RELATED ID: 3D73 RELATED DB: PDB REMARK 900 THE SAME MUTANT D35A PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE AT PH 7.0 REMARK 900 RELATED ID: 3D75 RELATED DB: PDB REMARK 900 THE SAME MUTANT D35N PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE AT PH 5.5 REMARK 900 RELATED ID: 3D76 RELATED DB: PDB REMARK 900 THE SAME MUTANT D35N PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE SOAKED AT PH 7.0 REMARK 900 RELATED ID: 3D77 RELATED DB: PDB REMARK 900 THE SAME MUTANT D35N PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE REMARK 900 SULFONAMIDE SOAKED AT PH 4.0 REMARK 900 RELATED ID: 3D78 RELATED DB: PDB REMARK 900 THE DIMERIC STRUCTURE OF THE SAME MUTANT D35N PROTEIN IN COMPLEX REMARK 900 WITH THE N-BUTYL BENZENE SULFONAMIDE AT PH 7.0 DBREF 3D74 A 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 DBREF 3D74 B 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 SEQADV 3D74 ALA A 35 UNP Q9U9J6 ASP 60 ENGINEERED MUTATION SEQADV 3D74 ALA B 35 UNP Q9U9J6 ASP 60 ENGINEERED MUTATION SEQRES 1 A 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 A 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 A 119 THR GLN ALA GLN ILE ASP ASP VAL ALA LYS GLY ASN LEU SEQRES 4 A 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 A 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 A 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 A 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 A 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 A 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 A 119 VAL ILE SEQRES 1 B 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 B 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 B 119 THR GLN ALA GLN ILE ASP ASP VAL ALA LYS GLY ASN LEU SEQRES 4 B 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 B 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 B 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 B 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 B 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 B 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 B 119 VAL ILE HET NBB A 120 14 HET NBB B 120 14 HET NBB B 121 14 HETNAM NBB N-BUTYL-BENZENESULFONAMIDE FORMUL 3 NBB 3(C10 H15 N O2 S) FORMUL 6 HOH *122(H2 O) HELIX 1 1 PRO A 6 VAL A 13 1 8 HELIX 2 2 VAL A 13 GLY A 25 1 13 HELIX 3 3 THR A 27 LYS A 36 1 10 HELIX 4 4 GLU A 42 PHE A 56 1 15 HELIX 5 5 ASP A 66 LEU A 74 1 9 HELIX 6 6 PRO A 75 GLN A 77 5 3 HELIX 7 7 LEU A 78 LEU A 90 1 13 HELIX 8 8 ASP A 96 ALA A 112 1 17 HELIX 9 9 PRO B 6 VAL B 13 1 8 HELIX 10 10 VAL B 13 GLY B 25 1 13 HELIX 11 11 THR B 27 LYS B 36 1 10 HELIX 12 12 GLU B 42 PHE B 56 1 15 HELIX 13 13 ASP B 66 LEU B 73 1 8 HELIX 14 14 PRO B 75 LEU B 90 1 16 HELIX 15 15 ASP B 96 ALA B 112 1 17 SSBOND 1 CYS A 20 CYS A 51 1555 1555 2.05 SSBOND 2 CYS A 47 CYS A 98 1555 1555 2.01 SSBOND 3 CYS A 89 CYS A 107 1555 1555 2.03 SSBOND 4 CYS B 20 CYS B 51 1555 1555 2.03 SSBOND 5 CYS B 47 CYS B 98 1555 1555 2.03 SSBOND 6 CYS B 89 CYS B 107 1555 1555 2.04 CISPEP 1 LEU A 90 PRO A 91 0 6.74 CISPEP 2 LEU B 90 PRO B 91 0 6.72 SITE 1 AC1 4 MET A 49 LEU A 53 TRP A 116 PHE A 117 SITE 1 AC2 4 MET B 49 LEU B 53 PHE B 56 PHE B 117 SITE 1 AC3 10 TRP B 4 PRO B 6 LEU B 12 LEU B 58 SITE 2 AC3 10 MET B 70 GLY B 72 LEU B 73 LEU B 74 SITE 3 AC3 10 PRO B 75 PHE B 117 CRYST1 61.133 60.769 56.270 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017772 0.00000