PDB Short entry for 3D8D HEADER PROTEIN BINDING 23-MAY-08 3D8D TITLE CRYSTAL STRUCTURE OF THE HUMAN FE65-PTB1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B MEMBER COMPND 3 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: FE65-PTB1 DOMAIN; COMPND 6 SYNONYM: FE65-PTB1, FE65 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBB1, FE65, RIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS ALPHA-BETA STRUCTURE, PHOSPHOTYROSINE BINDING DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.RADZIMANOWSKI,S.RAVAUD,I.SINNING,K.WILD REVDAT 5 20-MAR-24 3D8D 1 REMARK SEQADV REVDAT 4 13-JUL-11 3D8D 1 VERSN REVDAT 3 24-FEB-09 3D8D 1 VERSN REVDAT 2 18-NOV-08 3D8D 1 JRNL REVDAT 1 10-JUN-08 3D8D 0 JRNL AUTH J.RADZIMANOWSKI,S.RAVAUD,S.SCHLESINGER,J.KOCH,K.BEYREUTHER, JRNL AUTH 2 I.SINNING,K.WILD JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN FE65-PTB1 DOMAIN. JRNL REF J.BIOL.CHEM. V. 283 23113 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550529 JRNL DOI 10.1074/JBC.M800861200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.RADZIMANOWSKI,S.RAVAUD,K.BEYREUTHER,I.SINNING,K.WILD REMARK 1 TITL MERCURY-INDUCED CRYSTALLIZATION AND SAD PHASING OF THE HUMAN REMARK 1 TITL 2 FE65-PTB1 DOMAIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 382 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18453707 REMARK 1 DOI 10.1107/S174430910800835X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.935 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2221 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2992 ; 1.445 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.872 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;29.091 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;15.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1642 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 867 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1490 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 1.084 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2208 ; 1.848 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 886 ; 2.404 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 784 ; 3.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0073 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 83.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 5% (V/V) ETHYLENE GLYCOL, REMARK 280 8% (W/V) PEG 3350, 1MM CH3HGCL, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.87800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.98700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.78700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.98700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.87800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.78700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -21.87800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 119.36100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.97400 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 21.87800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.57400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 41.98700 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -39.78700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.98700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 460 REMARK 465 ARG A 461 REMARK 465 GLU A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 GLY B 460 REMARK 465 ARG B 461 REMARK 465 GLU B 507 REMARK 465 HIS B 508 REMARK 465 HIS B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 499 CB CYS A 499 SG 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 458 -149.07 -90.10 REMARK 500 GLU A 505 32.55 -69.50 REMARK 500 GLU B 505 -71.46 -68.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 514 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D8E RELATED DB: PDB REMARK 900 RELATED ID: 3D8F RELATED DB: PDB DBREF 3D8D A 366 505 UNP O00213 APBB1_HUMAN 366 505 DBREF 3D8D B 366 505 UNP O00213 APBB1_HUMAN 366 505 SEQADV 3D8D LEU A 506 UNP O00213 EXPRESSION TAG SEQADV 3D8D GLU A 507 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 508 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 509 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 510 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 511 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 512 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS A 513 UNP O00213 EXPRESSION TAG SEQADV 3D8D LEU B 506 UNP O00213 EXPRESSION TAG SEQADV 3D8D GLU B 507 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 508 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 509 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 510 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 511 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 512 UNP O00213 EXPRESSION TAG SEQADV 3D8D HIS B 513 UNP O00213 EXPRESSION TAG SEQRES 1 A 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 A 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 A 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 A 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 A 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 A 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 A 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 A 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 A 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 A 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 A 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS SEQRES 1 B 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 B 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 B 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 B 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 B 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 B 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 B 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 B 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 B 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 B 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 B 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 B 148 HIS HIS HIS HIS HIS HET HG A 1 1 HET HG A 5 1 HET HG A 6 1 HET EDO A 514 4 HET HG B 2 1 HET HG B 3 1 HET HG B 4 1 HETNAM HG MERCURY (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 HG 6(HG 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 10 HOH *130(H2 O) HELIX 1 1 THR A 381 ALA A 386 5 6 HELIX 2 2 ARG A 389 SER A 402 1 14 HELIX 3 3 ILE A 448 ILE A 450 5 3 HELIX 4 4 PRO A 487 GLU A 505 1 19 HELIX 5 5 GLU B 382 ALA B 386 5 5 HELIX 6 6 ARG B 389 TYR B 403 1 15 HELIX 7 7 ILE B 448 ILE B 450 5 3 HELIX 8 8 ALA B 488 LEU B 506 1 19 SHEET 1 A 7 LEU A 441 PRO A 446 0 SHEET 2 A 7 THR A 430 VAL A 434 -1 N LEU A 431 O GLN A 445 SHEET 3 A 7 ASP A 421 GLU A 427 -1 N GLN A 425 O LYS A 432 SHEET 4 A 7 LYS A 368 GLU A 379 -1 N PHE A 370 O LEU A 424 SHEET 5 A 7 LEU A 477 CYS A 484 -1 O VAL A 481 N LEU A 375 SHEET 6 A 7 ASP A 464 ARG A 470 -1 N PHE A 465 O PHE A 482 SHEET 7 A 7 VAL A 452 VAL A 455 -1 N VAL A 452 O VAL A 468 SHEET 1 B 7 LEU B 441 PRO B 446 0 SHEET 2 B 7 THR B 430 VAL B 434 -1 N LEU B 431 O GLN B 445 SHEET 3 B 7 ASP B 421 GLU B 427 -1 N GLN B 425 O LYS B 432 SHEET 4 B 7 LYS B 368 GLU B 379 -1 N PHE B 370 O LEU B 424 SHEET 5 B 7 LEU B 477 CYS B 484 -1 O VAL B 481 N LEU B 375 SHEET 6 B 7 ASP B 464 ARG B 470 -1 N PHE B 465 O PHE B 482 SHEET 7 B 7 VAL B 452 VAL B 455 -1 N VAL B 452 O VAL B 468 SITE 1 AC1 2 CYS A 369 LEU B 423 SITE 1 AC2 2 CYS A 369 CYS B 369 SITE 1 AC3 4 MET B 380 ALA B 393 CYS B 397 CYS B 479 SITE 1 AC4 2 ASN A 407 CYS B 499 SITE 1 AC5 4 MET A 380 ALA A 393 CYS A 397 CYS A 479 SITE 1 AC6 2 CYS A 499 ASN B 407 SITE 1 AC7 2 HIS A 443 ALA A 444 CRYST1 43.756 79.574 83.974 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011908 0.00000