PDB Short entry for 3D9M HEADER TRANSCRIPTION 27-MAY-08 3D9M TITLE SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT TITLE 2 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE TITLE 3 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CTD INTERACTING DOMAIN OF SCAF8, UNP RESIDUES 1-136; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 16; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CTD-PEPTIDE; COMPND 9 CHAIN: Y, Z; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM16, KIAA1116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: PEPTIDE DERIVED FROM THE CONSERVED REPEAT SEQUENCE IN SOURCE 13 RNA POLYMERASE II CTD KEYWDS SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, KEYWDS 2 PHOSPHO-CTD, PHOSPHOPROTEIN, RNA-BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.BECKER,B.LOLL,A.MEINHART REVDAT 7 30-AUG-23 3D9M 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 3D9M 1 REMARK REVDAT 5 13-JUL-11 3D9M 1 VERSN REVDAT 4 24-FEB-09 3D9M 1 VERSN REVDAT 3 19-AUG-08 3D9M 1 JRNL REVDAT 2 29-JUL-08 3D9M 1 JRNL REVDAT 1 10-JUN-08 3D9M 0 JRNL AUTH R.BECKER,B.LOLL,A.MEINHART JRNL TITL SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO JRNL TITL 2 DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXYL-TERMINAL JRNL TITL 3 DOMAIN OF RNA POLYMERASE II. JRNL REF J.BIOL.CHEM. V. 283 22659 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550522 JRNL DOI 10.1074/JBC.M803540200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 32269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2512 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3410 ; 1.129 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 4.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;35.498 ;24.685 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;11.943 ;15.031 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.520 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1841 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1219 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1759 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 0.716 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2458 ; 1.133 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1091 ; 2.044 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 3.266 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7150 3.9467 16.6273 REMARK 3 T TENSOR REMARK 3 T11: -0.1902 T22: -0.1587 REMARK 3 T33: -0.1562 T12: 0.0128 REMARK 3 T13: -0.0228 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.2659 L22: 2.6929 REMARK 3 L33: 5.1185 L12: 0.3107 REMARK 3 L13: 0.8107 L23: 0.8962 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.0889 S13: 0.1523 REMARK 3 S21: -0.1270 S22: -0.2060 S23: 0.0639 REMARK 3 S31: -0.1584 S32: -0.1123 S33: 0.2490 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4361 14.7468 -9.7175 REMARK 3 T TENSOR REMARK 3 T11: -0.2143 T22: -0.1764 REMARK 3 T33: -0.1380 T12: -0.0140 REMARK 3 T13: -0.0221 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.7714 L22: 2.4206 REMARK 3 L33: 5.2605 L12: -0.1741 REMARK 3 L13: 0.3804 L23: 0.9414 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.0385 S13: -0.0470 REMARK 3 S21: -0.0137 S22: 0.1486 S23: -0.0770 REMARK 3 S31: -0.0673 S32: 0.0198 S33: -0.0232 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -1 Z 7 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6338 8.6619 -6.9540 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: 0.2255 REMARK 3 T33: 0.0670 T12: -0.0812 REMARK 3 T13: 0.0636 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 15.0671 L22: 47.6720 REMARK 3 L33: 38.6848 L12: 1.3820 REMARK 3 L13: 12.9695 L23: -24.6178 REMARK 3 S TENSOR REMARK 3 S11: 0.4163 S12: -1.1942 S13: -0.4028 REMARK 3 S21: 1.8060 S22: 0.3672 S23: 2.5465 REMARK 3 S31: -0.2150 S32: -2.9809 S33: -0.7836 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 1 Y 3 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3323 0.4154 14.5864 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.0763 REMARK 3 T33: 0.1512 T12: 0.0962 REMARK 3 T13: -0.0269 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 37.4000 L22: 23.6257 REMARK 3 L33: 128.1427 L12: -20.4843 REMARK 3 L13: -31.5929 L23: 7.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.9592 S12: 0.2329 S13: 2.0616 REMARK 3 S21: 1.2960 S22: 0.1499 S23: 0.9862 REMARK 3 S31: -1.9155 S32: -3.0024 S33: -1.1091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9538 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3D9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M LI2SO4, 1.6M (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.29000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.93500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.64500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 TYR Y -6 REMARK 465 SER Y -5 REMARK 465 PRO Y -4 REMARK 465 THR Y -3 REMARK 465 SEP Y -2 REMARK 465 PRO Y -1 REMARK 465 SER Y 0 REMARK 465 THR Y 4 REMARK 465 SEP Y 5 REMARK 465 PRO Y 6 REMARK 465 SER Y 7 REMARK 465 TYR Z -6 REMARK 465 SER Z -5 REMARK 465 PRO Z -4 REMARK 465 THR Z -3 REMARK 465 SEP Z -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SZ9 RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 1SZA RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 2BF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RPR OF PCF11 REMARK 900 RELATED ID: 3CLJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE RNA POLYMERASE II CTD-INTERACTING DOMAIN OF NRD1 REMARK 900 RELATED ID: 6404 RELATED DB: BMRB REMARK 900 BACKBONE ASSIGNMENT OF PCF11 CTD BINDING DOMAIN REMARK 900 RELATED ID: 3D9I RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9J RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9K RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) REMARK 900 RELATED ID: 3D9L RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2) REMARK 900 RELATED ID: 3D9N RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER7) REMARK 900 RELATED ID: 3D9O RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD UNPHOSPHORYLATED) REMARK 900 RELATED ID: 3D9P RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) DBREF 3D9M A 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9M B 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9M Y -6 7 PDB 3D9M 3D9M -6 7 DBREF 3D9M Z -6 7 PDB 3D9M 3D9M -6 7 SEQADV 3D9M ALA A 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M LEU A 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M GLU A 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS A 145 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M ALA B 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M LEU B 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M GLU B 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9M HIS B 145 UNP Q9UPN6 EXPRESSION TAG SEQRES 1 A 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 A 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 A 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 A 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 A 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 A 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 A 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 A 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 A 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 A 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 A 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 B 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 B 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 B 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 B 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 B 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 B 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 B 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 B 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 B 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 B 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS SEQRES 1 Y 14 TYR SER PRO THR SEP PRO SER TYR SER PRO THR SEP PRO SEQRES 2 Y 14 SER SEQRES 1 Z 14 TYR SER PRO THR SEP PRO SER TYR SER PRO THR SEP PRO SEQRES 2 Z 14 SER MODRES 3D9M SEP Z 5 SER PHOSPHOSERINE HET SEP Z 5 10 HET NH4 A 400 1 HET SO4 A 501 5 HET SO4 A 503 5 HET SO4 A 507 5 HET SO4 A 508 5 HET NH4 B 401 1 HET SO4 B 504 5 HET SO4 B 506 5 HET SO4 B 509 5 HETNAM SEP PHOSPHOSERINE HETNAM NH4 AMMONIUM ION HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 4 SEP C3 H8 N O6 P FORMUL 5 NH4 2(H4 N 1+) FORMUL 6 SO4 7(O4 S 2-) FORMUL 14 HOH *161(H2 O) HELIX 1 1 GLU A 2 SER A 13 1 12 HELIX 2 2 LEU A 14 TYR A 17 5 4 HELIX 3 3 SER A 22 ALA A 36 1 15 HELIX 4 4 PHE A 39 CYS A 54 1 16 HELIX 5 5 LYS A 55 GLU A 57 5 3 HELIX 6 6 TYR A 58 GLY A 78 1 21 HELIX 7 7 VAL A 83 ASN A 90 1 8 HELIX 8 8 ASN A 91 TYR A 100 1 10 HELIX 9 9 ARG A 101 CYS A 102 5 2 HELIX 10 10 PRO A 103 ASP A 105 5 3 HELIX 11 11 ASP A 106 ASN A 120 1 15 HELIX 12 12 LYS A 124 GLU A 139 1 16 HELIX 13 13 MET B 1 SER B 13 1 13 HELIX 14 14 LEU B 14 TYR B 17 5 4 HELIX 15 15 SER B 22 ALA B 36 1 15 HELIX 16 16 PHE B 39 CYS B 54 1 16 HELIX 17 17 LYS B 55 GLU B 57 5 3 HELIX 18 18 TYR B 58 GLY B 78 1 21 HELIX 19 19 VAL B 83 ASN B 90 1 8 HELIX 20 20 ASN B 91 TYR B 100 1 10 HELIX 21 21 ARG B 101 CYS B 102 5 2 HELIX 22 22 PRO B 103 ASP B 105 5 3 HELIX 23 23 ASP B 106 ASN B 120 1 15 HELIX 24 24 LYS B 124 GLU B 139 1 16 LINK C THR Z 4 N SEP Z 5 1555 1555 1.33 LINK C SEP Z 5 N PRO Z 6 1555 1555 1.35 CISPEP 1 PRO A 19 PRO A 20 0 4.98 CISPEP 2 PRO B 19 PRO B 20 0 3.70 SITE 1 AC1 4 ILE A 37 SER A 73 PHE A 77 ASP A 82 SITE 1 AC2 4 ILE B 37 SER B 73 PHE B 77 ASP B 82 SITE 1 AC3 2 LYS A 41 ARG A 87 SITE 1 AC4 2 GLY A 78 GLN A 79 SITE 1 AC5 2 LYS B 41 ARG B 87 SITE 1 AC6 3 ARG B 71 PRO Z 6 SER Z 7 SITE 1 AC7 4 ARG A 71 LEU A 116 ASN A 120 HIS B 140 SITE 1 AC8 3 TYR A 40 ARG A 87 ASN A 90 SITE 1 AC9 4 TYR B 40 LYS B 41 ARG B 87 ASN B 90 CRYST1 57.610 57.610 106.580 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009383 0.00000