PDB Short entry for 3DGR
HEADER    TRANSFERASE                             15-JUN-08   3DGR              
TITLE     CRYSTAL STRUCTURE OF HUMAN NAMPT COMPLEXED WITH ADP ANALOGUE          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE;                    
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: NAMPRTASE, NAMPT, PRE-B CELL-ENHANCING FACTOR, PRE-B-CELL   
COMPND   5 COLONY-ENHANCING FACTOR 1, VISFATIN;                                 
COMPND   6 EC: 2.4.2.12;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_TAXID: 9606;                                                
SOURCE   4 GENE: NAMPT, PBEF, PBEF1;                                            
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PDEST                                     
KEYWDS    TRANSFERASE, NMPRTASE, VISFATIN, ADENOSINE 5'-(ALPHA, BETA-           
KEYWDS   2 METHYLENE)DIPHOSPHATE, ALTERNATIVE SPLICING, CYTOPLASM,              
KEYWDS   3 GLYCOSYLTRANSFERASE, PHOSPHOPROTEIN, POLYMORPHISM, PYRIDINE          
KEYWDS   4 NUCLEOTIDE BIOSYNTHESIS                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.HO,E.S.BURGOS,S.C.ALMO,V.L.SCHRAMM                                  
REVDAT   3   25-OCT-17 3DGR    1       REMARK                                   
REVDAT   2   08-SEP-09 3DGR    1       JRNL                                     
REVDAT   1   18-AUG-09 3DGR    0                                                
JRNL        AUTH   E.S.BURGOS,M.C.HO,S.C.ALMO,V.L.SCHRAMM                       
JRNL        TITL   A PHOSPHOENZYME MIMIC, OVERLAPPING CATALYTIC SITES AND       
JRNL        TITL 2 REACTION COORDINATE MOTION FOR HUMAN NAMPT.                  
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 106 13748 2009              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   19666527                                                     
JRNL        DOI    10.1073/PNAS.0903898106                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.10 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.92                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 94.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 58607                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.182                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.225                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2972                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.10                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.15                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2417                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 56.35                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2150                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 137                          
REMARK   3   BIN FREE R VALUE                    : 0.2850                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 7422                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 54                                      
REMARK   3   SOLVENT ATOMS            : 304                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 33.11                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.01000                                              
REMARK   3    B22 (A**2) : 0.01000                                              
REMARK   3    B33 (A**2) : -0.03000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -0.01000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.221         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.184         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.123         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.558         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.959                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.939                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  7673 ; 0.016 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES): 10412 ; 1.487 ; 1.969       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   928 ; 6.205 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   346 ;38.621 ;24.855       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  1332 ;15.599 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    26 ;19.388 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):  1143 ; 0.101 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  5752 ; 0.006 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  3580 ; 0.206 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  5254 ; 0.306 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   428 ; 0.129 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    43 ; 0.171 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     6 ; 0.123 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  4776 ; 0.876 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  7486 ; 1.430 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  3399 ; 2.338 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  2925 ; 3.559 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3DGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000048018.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 25-JAN-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X29A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.08090                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 58632                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 94.5                               
REMARK 200  DATA REDUNDANCY                : 3.600                              
REMARK 200  R MERGE                    (I) : 0.07400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.3000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.17                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 63.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.24700                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2GVJ                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 50.05                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM NACL, 100MM TRIS-HCL, 15% PEG      
REMARK 280  3350, 20% GLYCEROL, PH 8.5, VAPOR DIFFUSION, SITTING DROP,          
REMARK 280  TEMPERATURE 291K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       53.61450            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 8170 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 33210 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.9 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     ASN A     2                                                      
REMARK 465     PRO A     3                                                      
REMARK 465     ALA A     4                                                      
REMARK 465     ALA A     5                                                      
REMARK 465     GLU A     6                                                      
REMARK 465     ALA A     7                                                      
REMARK 465     GLU A     8                                                      
REMARK 465     LYS A    42                                                      
REMARK 465     LYS A    43                                                      
REMARK 465     THR A    44                                                      
REMARK 465     GLU A    45                                                      
REMARK 465     ASN A    46                                                      
REMARK 465     SER A    47                                                      
REMARK 465     LYS A    48                                                      
REMARK 465     LEU A    49                                                      
REMARK 465     ARG A    50                                                      
REMARK 465     LYS A    51                                                      
REMARK 465     VAL A    52                                                      
REMARK 465     LYS A    53                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ASN B     2                                                      
REMARK 465     PRO B     3                                                      
REMARK 465     ALA B     4                                                      
REMARK 465     ALA B     5                                                      
REMARK 465     GLU B     6                                                      
REMARK 465     ALA B     7                                                      
REMARK 465     GLU B     8                                                      
REMARK 465     LYS B    42                                                      
REMARK 465     LYS B    43                                                      
REMARK 465     THR B    44                                                      
REMARK 465     GLU B    45                                                      
REMARK 465     ASN B    46                                                      
REMARK 465     SER B    47                                                      
REMARK 465     LYS B    48                                                      
REMARK 465     LEU B    49                                                      
REMARK 465     ARG B    50                                                      
REMARK 465     LYS B    51                                                      
REMARK 465     VAL B    52                                                      
REMARK 465     LYS B    53                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A 282   CB  -  CG  -  OD1 ANGL. DEV. =   5.7 DEGREES          
REMARK 500    ARG A 392   NE  -  CZ  -  NH1 ANGL. DEV. =   3.5 DEGREES          
REMARK 500    ARG A 392   NE  -  CZ  -  NH2 ANGL. DEV. =  -4.4 DEGREES          
REMARK 500    LEU A 409   CA  -  CB  -  CG  ANGL. DEV. =  16.6 DEGREES          
REMARK 500    ARG B 127   NE  -  CZ  -  NH1 ANGL. DEV. =  -3.9 DEGREES          
REMARK 500    ARG B 311   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A  93      153.60    175.53                                   
REMARK 500    TYR A 231      -52.74   -122.85                                   
REMARK 500    TYR A 281      -50.77   -123.00                                   
REMARK 500    ASP A 282      102.12   -163.71                                   
REMARK 500    GLU A 293      -67.68   -138.03                                   
REMARK 500    ASP A 313       21.49   -148.69                                   
REMARK 500    PRO A 333       97.80    -69.19                                   
REMARK 500    ASP A 416       69.08   -160.15                                   
REMARK 500    ASP A 420       88.20   -154.38                                   
REMARK 500    ASP B  93      169.44    175.69                                   
REMARK 500    ASP B  94       70.16   -110.58                                   
REMARK 500    TYR B 231      -58.21   -127.59                                   
REMARK 500    PHE B 269       61.90   -119.38                                   
REMARK 500    TYR B 281      -50.10   -124.61                                   
REMARK 500    GLU B 293      -74.46   -131.27                                   
REMARK 500    ASP B 313       23.28   -155.05                                   
REMARK 500    PRO B 333       95.02    -67.88                                   
REMARK 500    MET B 372       30.84     73.10                                   
REMARK 500    ASP B 416       75.80   -155.97                                   
REMARK 500    ASP B 420       87.95   -153.21                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A12 A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A12 B 501                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3DHD   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN NAMPT COMPLEXED WITH NICOTINAMIDE         
REMARK 900 MONONUCLEOTIDE AND PYROPHOSPHATE                                     
REMARK 900 RELATED ID: 3DHF   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF PHOSPHORYLATED MIMIC FORM OF HUMAN NAMPT        
REMARK 900 COMPLEXED WITH NICOTINAMIDE MONONUCLEOTIDE AND PYROPHOSPHATE         
REMARK 900 RELATED ID: 3DKJ   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN NAMPT COMPLEXED WITH BENZAMIDE AND        
REMARK 900 PHOSPHORIBOSYL PYROPHOSPHATE                                         
REMARK 900 RELATED ID: 3DKL   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF PHOSPHORYLATED MIMIC FORM OF HUMAN NAMPT        
REMARK 900 COMPLEXED WITH BENZAMIDE AND PHOSPHORIBOSYL PYROPHOSPHATE            
DBREF  3DGR A    1   484  UNP    P43490   NAMPT_HUMAN      1    484             
DBREF  3DGR B    1   484  UNP    P43490   NAMPT_HUMAN      1    484             
SEQRES   1 A  484  MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU          
SEQRES   2 A  484  ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR          
SEQRES   3 A  484  PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS          
SEQRES   4 A  484  ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL          
SEQRES   5 A  484  LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE          
SEQRES   6 A  484  LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU          
SEQRES   7 A  484  LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE          
SEQRES   8 A  484  GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE          
SEQRES   9 A  484  LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS          
SEQRES  10 A  484  ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL          
SEQRES  11 A  484  LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP          
SEQRES  12 A  484  LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP          
SEQRES  13 A  484  TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS          
SEQRES  14 A  484  LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN          
SEQRES  15 A  484  LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR          
SEQRES  16 A  484  ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA          
SEQRES  17 A  484  SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL          
SEQRES  18 A  484  ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS          
SEQRES  19 A  484  ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS          
SEQRES  20 A  484  SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP          
SEQRES  21 A  484  ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO          
SEQRES  22 A  484  VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA          
SEQRES  23 A  484  CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE          
SEQRES  24 A  484  VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO          
SEQRES  25 A  484  ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU          
SEQRES  26 A  484  GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER          
SEQRES  27 A  484  LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE          
SEQRES  28 A  484  GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE          
SEQRES  29 A  484  VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN          
SEQRES  30 A  484  ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU          
SEQRES  31 A  484  THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR          
SEQRES  32 A  484  VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP          
SEQRES  33 A  484  PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG          
SEQRES  34 A  484  LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR          
SEQRES  35 A  484  LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN          
SEQRES  36 A  484  ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR          
SEQRES  37 A  484  LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN          
SEQRES  38 A  484  LEU ASN ILE                                                  
SEQRES   1 B  484  MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU          
SEQRES   2 B  484  ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR          
SEQRES   3 B  484  PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS          
SEQRES   4 B  484  ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL          
SEQRES   5 B  484  LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE          
SEQRES   6 B  484  LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU          
SEQRES   7 B  484  LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE          
SEQRES   8 B  484  GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE          
SEQRES   9 B  484  LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS          
SEQRES  10 B  484  ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL          
SEQRES  11 B  484  LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP          
SEQRES  12 B  484  LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP          
SEQRES  13 B  484  TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS          
SEQRES  14 B  484  LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN          
SEQRES  15 B  484  LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR          
SEQRES  16 B  484  ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA          
SEQRES  17 B  484  SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL          
SEQRES  18 B  484  ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS          
SEQRES  19 B  484  ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS          
SEQRES  20 B  484  SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP          
SEQRES  21 B  484  ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO          
SEQRES  22 B  484  VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA          
SEQRES  23 B  484  CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE          
SEQRES  24 B  484  VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO          
SEQRES  25 B  484  ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU          
SEQRES  26 B  484  GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER          
SEQRES  27 B  484  LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE          
SEQRES  28 B  484  GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE          
SEQRES  29 B  484  VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN          
SEQRES  30 B  484  ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU          
SEQRES  31 B  484  THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR          
SEQRES  32 B  484  VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP          
SEQRES  33 B  484  PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG          
SEQRES  34 B  484  LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR          
SEQRES  35 B  484  LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN          
SEQRES  36 B  484  ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR          
SEQRES  37 B  484  LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN          
SEQRES  38 B  484  LEU ASN ILE                                                  
HET    A12  A 501      27                                                       
HET    A12  B 501      27                                                       
HETNAM     A12 PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER                      
HETSYN     A12 ALPHA,BETA-METHYLENEADENOSINE-5'-DIPHOSPHATE                     
FORMUL   3  A12    2(C11 H17 N5 O9 P2)                                          
FORMUL   5  HOH   *304(H2 O)                                                    
HELIX    1   1 ASN A   10  ALA A   14  5                                   5    
HELIX    2   2 ASP A   16  GLN A   25  5                                  10    
HELIX    3   3 GLY A   61  LEU A   70  1                                  10    
HELIX    4   4 THR A   76  GLN A   92  1                                  17    
HELIX    5   5 ASN A   97  ASP A  109  1                                  13    
HELIX    6   6 ASP A  138  TYR A  142  5                                   5    
HELIX    7   7 TRP A  143  ILE A  148  1                                   6    
HELIX    8   8 ILE A  148  GLN A  154  1                                   7    
HELIX    9   9 SER A  155  GLY A  181  1                                  27    
HELIX   10  10 GLY A  185  TYR A  188  5                                   4    
HELIX   11  11 GLY A  194  VAL A  198  5                                   5    
HELIX   12  12 SER A  200  LEU A  212  1                                  13    
HELIX   13  13 THR A  220  TYR A  231  1                                  12    
HELIX   14  14 GLU A  246  ALA A  252  1                                   7    
HELIX   15  15 TRP A  253  ASP A  256  5                                   4    
HELIX   16  16 HIS A  257  PHE A  269  1                                  13    
HELIX   17  17 ASP A  282  ILE A  290  1                                   9    
HELIX   18  18 LEU A  295  VAL A  300  1                                   6    
HELIX   19  19 ASN A  316  PHE A  332  1                                  17    
HELIX   20  20 ASP A  357  LYS A  371  1                                  15    
HELIX   21  21 SER A  374  GLU A  376  5                                   3    
HELIX   22  22 GLY A  383  GLN A  388  1                                   6    
HELIX   23  23 ASP A  420  ARG A  424  5                                   5    
HELIX   24  24 GLY A  446  GLU A  451  5                                   6    
HELIX   25  25 SER A  472  ALA A  480  1                                   9    
HELIX   26  26 ASN B   10  ALA B   14  5                                   5    
HELIX   27  27 ASP B   16  GLN B   25  5                                  10    
HELIX   28  28 GLY B   61  LEU B   70  1                                  10    
HELIX   29  29 THR B   76  GLN B   92  1                                  17    
HELIX   30  30 ASN B   97  ASP B  109  1                                  13    
HELIX   31  31 ASP B  138  TYR B  142  5                                   5    
HELIX   32  32 TRP B  143  ILE B  148  1                                   6    
HELIX   33  33 ILE B  148  GLN B  154  1                                   7    
HELIX   34  34 SER B  155  GLY B  181  1                                  27    
HELIX   35  35 GLY B  185  TYR B  188  5                                   4    
HELIX   36  36 GLY B  194  VAL B  198  5                                   5    
HELIX   37  37 SER B  200  LEU B  212  1                                  13    
HELIX   38  38 THR B  220  TYR B  231  1                                  12    
HELIX   39  39 GLU B  246  ALA B  252  1                                   7    
HELIX   40  40 TRP B  253  ASP B  256  5                                   4    
HELIX   41  41 HIS B  257  PHE B  269  1                                  13    
HELIX   42  42 ASP B  282  LYS B  289  1                                   8    
HELIX   43  43 LEU B  295  ILE B  299  5                                   5    
HELIX   44  44 ASN B  316  PHE B  332  1                                  17    
HELIX   45  45 ASP B  357  LYS B  371  1                                  15    
HELIX   46  46 SER B  374  GLU B  376  5                                   3    
HELIX   47  47 GLY B  383  GLN B  388  1                                   6    
HELIX   48  48 ASP B  420  ARG B  424  5                                   5    
HELIX   49  49 GLY B  446  GLU B  451  5                                   6    
HELIX   50  50 SER B  472  GLN B  481  1                                  10    
SHEET    1   A 7 LEU A 409  ASN A 412  0                                        
SHEET    2   A 7 CYS A 397  THR A 406 -1  N  VAL A 404   O  ILE A 411           
SHEET    3   A 7 THR A  30  CYS A  39 -1  N  TYR A  34   O  TYR A 403           
SHEET    4   A 7 VAL A 130  ASN A 136 -1  O  VAL A 134   N  SER A  35           
SHEET    5   A 7 ILE A 114  ALA A 118 -1  N  GLU A 115   O  GLU A 135           
SHEET    6   A 7 HIS A 459  LYS A 463 -1  O  VAL A 461   N  ILE A 116           
SHEET    7   A 7 LYS A 466  VAL A 467 -1  O  LYS A 466   N  LYS A 463           
SHEET    1   B 2 GLU A  56  VAL A  58  0                                        
SHEET    2   B 2 VAL A 124  PRO A 126 -1  O  ILE A 125   N  THR A  57           
SHEET    1   C 5 LEU A 190  ASP A 192  0                                        
SHEET    2   C 5 ILE A 378  SER A 382  1  O  PHE A 380   N  HIS A 191           
SHEET    3   C 5 LEU A 348  GLN A 352  1  N  GLN A 352   O  GLY A 381           
SHEET    4   C 5 LEU A 308  ARG A 311  1  N  LEU A 308   O  ARG A 349           
SHEET    5   C 5 VAL A 274  VAL A 277  1  N  VAL A 274   O  ILE A 309           
SHEET    1   D 2 THR A 335  GLU A 336  0                                        
SHEET    2   D 2 LYS A 342  LEU A 343 -1  O  LEU A 343   N  THR A 335           
SHEET    1   E 2 SER A 431  ARG A 434  0                                        
SHEET    2   E 2 PHE A 440  LEU A 443 -1  O  VAL A 441   N  HIS A 433           
SHEET    1   F 7 LEU B 409  ASN B 412  0                                        
SHEET    2   F 7 CYS B 397  THR B 406 -1  N  VAL B 404   O  ILE B 411           
SHEET    3   F 7 THR B  30  CYS B  39 -1  N  TYR B  34   O  TYR B 403           
SHEET    4   F 7 VAL B 130  ASN B 136 -1  O  VAL B 134   N  SER B  35           
SHEET    5   F 7 ILE B 114  ALA B 118 -1  N  GLU B 115   O  GLU B 135           
SHEET    6   F 7 HIS B 459  LYS B 463 -1  O  HIS B 459   N  ALA B 118           
SHEET    7   F 7 LYS B 466  VAL B 467 -1  O  LYS B 466   N  LYS B 463           
SHEET    1   G 2 GLU B  56  VAL B  58  0                                        
SHEET    2   G 2 VAL B 124  PRO B 126 -1  O  ILE B 125   N  THR B  57           
SHEET    1   H 5 LEU B 190  ASP B 192  0                                        
SHEET    2   H 5 ILE B 378  SER B 382  1  O  PHE B 380   N  HIS B 191           
SHEET    3   H 5 LEU B 348  GLN B 352  1  N  GLN B 352   O  ALA B 379           
SHEET    4   H 5 LEU B 308  ARG B 311  1  N  ILE B 310   O  ARG B 349           
SHEET    5   H 5 VAL B 274  VAL B 277  1  N  VAL B 274   O  ILE B 309           
SHEET    1   I 2 THR B 335  GLU B 336  0                                        
SHEET    2   I 2 LYS B 342  LEU B 343 -1  O  LEU B 343   N  THR B 335           
SHEET    1   J 2 SER B 431  ARG B 434  0                                        
SHEET    2   J 2 PHE B 440  LEU B 443 -1  O  VAL B 441   N  HIS B 433           
SITE     1 AC1 11 PHE A 193  ARG A 196  ALA A 244  ARG A 311                    
SITE     2 AC1 11 GLY A 353  GLY A 383  TYR B  18  ARG B  40                    
SITE     3 AC1 11 ARG B 392  SER B 398  LYS B 400                               
SITE     1 AC2 11 TYR A  18  ARG A  40  ARG A 392  SER A 398                    
SITE     2 AC2 11 LYS A 400  PHE B 193  ARG B 196  ALA B 244                    
SITE     3 AC2 11 ARG B 311  GLY B 353  GLY B 383                               
CRYST1   61.290  107.229   82.661  90.00  96.41  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016316  0.000000  0.001833        0.00000                         
SCALE2      0.000000  0.009326  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012174        0.00000