PDB Short entry for 3DH1 HEADER HYDROLASE 16-JUN-08 3DH1 TITLE CRYSTAL STRUCTURE OF HUMAN TRNA-SPECIFIC ADENOSINE-34 DEAMINASE TITLE 2 SUBUNIT ADAT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-SPECIFIC ADENOSINE DEAMINASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 20-185; COMPND 5 SYNONYM: TRNA-SPECIFIC ADENOSINE-34 DEAMINASE SUBUNIT ADAT2, COMPND 6 DEAMINASE DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 3.5.4.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: ADAT2, DEADC1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS TRNA-SPECIFIC ADENOSINE DEAMINASE, ZINC-BINDING PROTEIN, TRANSLATION, KEYWDS 2 TRNA PROCESSING, HYDROLASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,L.TRESAUGUES,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 A.JOHANSSON,I.JOHANSSON,T.KARLBERG,T.KOTENYOVA,L.LEHTIO,M.MOCHE, AUTHOR 4 M.E.NILSSON,T.NYMAN,K.OLESEN,C.PERSSON,J.SAGEMARK,H.SCHUELER, AUTHOR 5 A.G.THORSELL,S.VAN DER BERG,M.WISNIEWSKA,M.WIKSTROM,P.NORDLUND, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 3DH1 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3DH1 1 VERSN REVDAT 3 24-FEB-09 3DH1 1 VERSN REVDAT 2 16-SEP-08 3DH1 1 REMARK REVDAT 1 09-SEP-08 3DH1 0 JRNL AUTH M.WELIN,L.TRESAUGUES,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND, JRNL AUTH 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON,T.KARLBERG, JRNL AUTH 4 T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON,T.NYMAN,K.OLESEN, JRNL AUTH 5 C.PERSSON,J.SAGEMARK,H.SCHUELER,A.G.THORSELL,S.VAN DER BERG, JRNL AUTH 6 M.WISNIEWSKA,M.WIKSTROM,P.NORDLUND JRNL TITL CRYSTAL STRUCTURE OF HUMAN TRNA-SPECIFIC ADENOSINE-34 JRNL TITL 2 DEAMINASE SUBUNIT ADAT2. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81000 REMARK 3 B22 (A**2) : 5.42000 REMARK 3 B33 (A**2) : -2.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5139 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3458 ; 0.018 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6948 ; 1.419 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8461 ; 1.062 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 639 ; 5.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.953 ;25.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 910 ;17.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 9.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 763 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5729 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 983 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1137 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3423 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2444 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2701 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 70 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.061 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4123 ; 0.675 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1294 ; 0.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5160 ; 0.665 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 1.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1788 ; 1.684 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 172 5 REMARK 3 1 B 13 B 172 5 REMARK 3 1 C 13 C 172 5 REMARK 3 1 D 13 D 172 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 942 ; 0.11 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 942 ; 0.12 ; 0.00 REMARK 3 MEDIUM POSITIONAL 1 C (A): 942 ; 0.12 ; 0.00 REMARK 3 MEDIUM POSITIONAL 1 D (A): 942 ; 0.12 ; 0.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 1172 ; 0.30 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1172 ; 0.30 ; 0.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 1172 ; 0.30 ; 0.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 1172 ; 0.30 ; 0.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 942 ; 0.42 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 942 ; 0.34 ; 0.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 942 ; 0.39 ; 0.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 942 ; 0.39 ; 0.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1172 ; 0.60 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1172 ; 0.52 ; 0.01 REMARK 3 LOOSE THERMAL 1 C (A**2): 1172 ; 0.51 ; 0.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 1172 ; 0.50 ; 0.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9834 21.9265 50.3529 REMARK 3 T TENSOR REMARK 3 T11: -0.0508 T22: -0.0259 REMARK 3 T33: -0.1333 T12: 0.0032 REMARK 3 T13: 0.0506 T23: -0.1630 REMARK 3 L TENSOR REMARK 3 L11: 2.1434 L22: 18.9055 REMARK 3 L33: 15.5092 L12: 4.0518 REMARK 3 L13: -1.3333 L23: -9.6262 REMARK 3 S TENSOR REMARK 3 S11: 0.2061 S12: -0.6148 S13: 0.2749 REMARK 3 S21: 0.3006 S22: 0.1925 S23: 0.4201 REMARK 3 S31: -0.7698 S32: 0.2017 S33: -0.3985 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0662 25.4905 34.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.0510 REMARK 3 T33: 0.2339 T12: -0.0049 REMARK 3 T13: -0.0049 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.6879 L22: 2.2023 REMARK 3 L33: 11.3789 L12: -1.4890 REMARK 3 L13: 3.7397 L23: -3.7303 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.3635 S13: 0.6111 REMARK 3 S21: -0.0423 S22: -0.1807 S23: -0.4686 REMARK 3 S31: -1.2472 S32: 0.4656 S33: 0.3129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3057 12.7117 33.7554 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0166 REMARK 3 T33: 0.0824 T12: 0.0076 REMARK 3 T13: 0.0382 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.4881 L22: 1.7783 REMARK 3 L33: 4.3394 L12: -0.3008 REMARK 3 L13: 0.5576 L23: 0.9204 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: 0.1289 S13: 0.0712 REMARK 3 S21: -0.1482 S22: 0.0288 S23: -0.0577 REMARK 3 S31: 0.1587 S32: 0.0990 S33: -0.1207 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0866 22.9033 29.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1346 REMARK 3 T33: 0.2264 T12: 0.0640 REMARK 3 T13: -0.0246 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.6981 L22: 9.9464 REMARK 3 L33: 10.0060 L12: 1.7648 REMARK 3 L13: -0.6396 L23: -5.8968 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.1294 S13: 0.7119 REMARK 3 S21: -0.2209 S22: -0.0541 S23: -0.0336 REMARK 3 S31: -0.7268 S32: -0.3731 S33: 0.0575 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4903 17.4720 39.9784 REMARK 3 T TENSOR REMARK 3 T11: -0.1617 T22: -0.0483 REMARK 3 T33: -0.0976 T12: 0.0786 REMARK 3 T13: -0.0564 T23: 0.1131 REMARK 3 L TENSOR REMARK 3 L11: 8.8869 L22: 41.6747 REMARK 3 L33: 18.6474 L12: -7.4891 REMARK 3 L13: -7.2723 L23: 21.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.3008 S12: 0.5948 S13: 0.7944 REMARK 3 S21: -0.2278 S22: -0.0014 S23: -0.5795 REMARK 3 S31: -0.4819 S32: -0.5410 S33: -0.2994 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6898 18.0614 55.0925 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.3164 REMARK 3 T33: 0.2253 T12: 0.0311 REMARK 3 T13: 0.0010 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.4130 L22: 3.4811 REMARK 3 L33: 19.0300 L12: -2.2223 REMARK 3 L13: -2.2630 L23: 5.7139 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.0166 S13: 0.3189 REMARK 3 S21: 0.3999 S22: -0.0640 S23: 0.3637 REMARK 3 S31: -0.3746 S32: -1.6918 S33: 0.1242 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4670 8.4154 56.5863 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.1725 REMARK 3 T33: 0.0567 T12: 0.0173 REMARK 3 T13: 0.0365 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.8441 L22: 3.3929 REMARK 3 L33: 5.4948 L12: -0.0952 REMARK 3 L13: 0.5299 L23: 0.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.1614 S13: -0.0038 REMARK 3 S21: 0.1588 S22: 0.0667 S23: 0.1987 REMARK 3 S31: 0.2803 S32: -0.3087 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 150 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4649 22.1445 59.3293 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.1730 REMARK 3 T33: 0.1698 T12: 0.0055 REMARK 3 T13: -0.0146 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 7.9442 L22: 4.8553 REMARK 3 L33: 10.0896 L12: -1.6535 REMARK 3 L13: -2.9406 L23: 3.3608 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.2737 S13: 0.9201 REMARK 3 S21: 0.2541 S22: -0.0803 S23: 0.4242 REMARK 3 S31: -0.7840 S32: -0.1240 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 23 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7156 -10.9566 87.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.0023 REMARK 3 T33: -0.1894 T12: -0.0246 REMARK 3 T13: -0.0279 T23: 0.1242 REMARK 3 L TENSOR REMARK 3 L11: 16.3244 L22: 21.2332 REMARK 3 L33: 15.7057 L12: -10.6973 REMARK 3 L13: -10.8857 L23: 13.2086 REMARK 3 S TENSOR REMARK 3 S11: -0.1923 S12: -1.3183 S13: -0.5866 REMARK 3 S21: 0.4859 S22: 0.4476 S23: -0.2751 REMARK 3 S31: 1.6130 S32: -0.0220 S33: -0.2553 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 27 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6842 -16.5034 79.1583 REMARK 3 T TENSOR REMARK 3 T11: 0.5828 T22: 0.3087 REMARK 3 T33: 0.0424 T12: 0.0606 REMARK 3 T13: -0.1164 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 28.9855 L22: 36.1149 REMARK 3 L33: 27.1938 L12: 30.8893 REMARK 3 L13: -26.0382 L23: -24.2615 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: 0.3704 S13: -0.0706 REMARK 3 S21: 1.3353 S22: -0.2608 S23: -0.9124 REMARK 3 S31: 0.3819 S32: -0.1516 S33: 0.3679 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 125 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5552 -6.2068 71.0695 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.2548 REMARK 3 T33: 0.1834 T12: -0.0503 REMARK 3 T13: -0.0218 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.8021 L22: 0.8570 REMARK 3 L33: 6.7940 L12: 0.3100 REMARK 3 L13: -0.5252 L23: -0.7214 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0061 S13: -0.4468 REMARK 3 S21: -0.1486 S22: 0.0229 S23: 0.3029 REMARK 3 S31: 0.7346 S32: -0.7290 S33: -0.0371 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 126 C 172 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0275 -4.5815 69.8712 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2542 REMARK 3 T33: 0.0867 T12: 0.0214 REMARK 3 T13: 0.0087 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.4638 L22: 7.1020 REMARK 3 L33: 5.0545 L12: -1.3658 REMARK 3 L13: 0.4033 L23: 0.6366 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.2370 S13: -0.1373 REMARK 3 S21: -0.0435 S22: 0.1113 S23: -0.4851 REMARK 3 S31: 0.6453 S32: 0.4231 S33: -0.1772 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 13 D 24 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4743 -5.9262 4.9329 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.1551 REMARK 3 T33: -0.1213 T12: 0.1387 REMARK 3 T13: 0.0260 T23: -0.1741 REMARK 3 L TENSOR REMARK 3 L11: 5.4432 L22: 40.1583 REMARK 3 L33: 19.5025 L12: -8.3407 REMARK 3 L13: 8.9124 L23: -23.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.2774 S12: 0.7056 S13: -0.4787 REMARK 3 S21: -0.3491 S22: -0.3323 S23: -0.5962 REMARK 3 S31: 1.0583 S32: 0.8233 S33: 0.0550 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 25 D 53 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4944 -6.4008 21.1653 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.2058 REMARK 3 T33: 0.1974 T12: 0.1211 REMARK 3 T13: -0.0183 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 3.0822 L22: 1.9845 REMARK 3 L33: 25.6792 L12: 0.1900 REMARK 3 L13: -1.3490 L23: -7.1184 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.1224 S13: -0.3892 REMARK 3 S21: 0.0837 S22: -0.1631 S23: -0.6391 REMARK 3 S31: 0.8501 S32: 1.2000 S33: 0.1453 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 54 D 157 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4968 2.8144 19.7924 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1407 REMARK 3 T33: 0.0886 T12: 0.0413 REMARK 3 T13: -0.0134 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.8391 L22: 2.3263 REMARK 3 L33: 5.5596 L12: 0.3635 REMARK 3 L13: -0.7933 L23: -0.2113 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.1461 S13: 0.0778 REMARK 3 S21: -0.0157 S22: 0.0653 S23: -0.1491 REMARK 3 S31: 0.1190 S32: 0.2738 S33: -0.0636 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 158 D 173 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8880 -15.0911 28.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.5440 T22: -0.0058 REMARK 3 T33: 0.5407 T12: 0.0767 REMARK 3 T13: -0.1379 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 11.7498 L22: 8.7308 REMARK 3 L33: 43.5484 L12: 4.1866 REMARK 3 L13: 1.8545 L23: 6.8994 REMARK 3 S TENSOR REMARK 3 S11: 0.4388 S12: -0.3465 S13: -0.8884 REMARK 3 S21: 0.2619 S22: 0.0229 S23: -0.3336 REMARK 3 S31: 2.3522 S32: -0.1917 S33: -0.4616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28130 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.84 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NX8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 GLU A 174 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 ASN A 177 REMARK 465 ALA A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 VAL A 183 REMARK 465 ARG A 184 REMARK 465 LYS A 185 REMARK 465 MET B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 GLU B 12 REMARK 465 GLN B 173 REMARK 465 GLU B 174 REMARK 465 ASN B 175 REMARK 465 PRO B 176 REMARK 465 ASN B 177 REMARK 465 ALA B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 VAL B 183 REMARK 465 ARG B 184 REMARK 465 LYS B 185 REMARK 465 MET C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 SER C 4 REMARK 465 SER C 5 REMARK 465 GLY C 6 REMARK 465 VAL C 7 REMARK 465 ASP C 8 REMARK 465 LEU C 9 REMARK 465 GLY C 10 REMARK 465 THR C 11 REMARK 465 GLU C 12 REMARK 465 GLN C 173 REMARK 465 GLU C 174 REMARK 465 ASN C 175 REMARK 465 PRO C 176 REMARK 465 ASN C 177 REMARK 465 ALA C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 SER C 181 REMARK 465 LYS C 182 REMARK 465 VAL C 183 REMARK 465 ARG C 184 REMARK 465 LYS C 185 REMARK 465 MET D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 HIS D 1 REMARK 465 HIS D 2 REMARK 465 HIS D 3 REMARK 465 SER D 4 REMARK 465 SER D 5 REMARK 465 GLY D 6 REMARK 465 VAL D 7 REMARK 465 ASP D 8 REMARK 465 LEU D 9 REMARK 465 GLY D 10 REMARK 465 THR D 11 REMARK 465 GLU D 12 REMARK 465 GLU D 174 REMARK 465 ASN D 175 REMARK 465 PRO D 176 REMARK 465 ASN D 177 REMARK 465 ALA D 178 REMARK 465 PRO D 179 REMARK 465 LYS D 180 REMARK 465 SER D 181 REMARK 465 LYS D 182 REMARK 465 VAL D 183 REMARK 465 ARG D 184 REMARK 465 LYS D 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE1 0.071 REMARK 500 GLU B 28 CG GLU B 28 CD 0.095 REMARK 500 LYS D 172 CD LYS D 172 CE 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 76.46 -118.26 REMARK 500 PRO B 43 79.63 -65.15 REMARK 500 GLU B 105 124.14 -37.92 REMARK 500 LYS B 118 36.18 73.81 REMARK 500 PHE B 131 24.34 -151.70 REMARK 500 ASN B 139 77.94 -115.34 REMARK 500 PHE C 131 19.61 -147.61 REMARK 500 ASP C 144 90.96 -69.17 REMARK 500 PHE D 131 20.08 -152.26 REMARK 500 TYR D 171 1.05 -65.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 CYS A 107 SG 107.2 REMARK 620 3 CYS A 110 SG 104.9 103.2 REMARK 620 4 HOH A 202 O 94.3 124.2 120.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 71 ND1 REMARK 620 2 CYS B 107 SG 96.1 REMARK 620 3 CYS B 110 SG 103.7 100.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 71 ND1 REMARK 620 2 CYS C 107 SG 103.4 REMARK 620 3 CYS C 110 SG 103.6 101.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 71 ND1 REMARK 620 2 CYS D 107 SG 101.8 REMARK 620 3 CYS D 110 SG 109.6 103.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 DBREF 3DH1 A 20 185 UNP Q7Z6V5 ADAT2_HUMAN 20 185 DBREF 3DH1 B 20 185 UNP Q7Z6V5 ADAT2_HUMAN 20 185 DBREF 3DH1 C 20 185 UNP Q7Z6V5 ADAT2_HUMAN 20 185 DBREF 3DH1 D 20 185 UNP Q7Z6V5 ADAT2_HUMAN 20 185 SEQADV 3DH1 MET A -3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A -2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A -1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A 0 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A 1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A 2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS A 3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER A 4 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER A 5 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY A 6 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 VAL A 7 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASP A 8 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU A 9 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY A 10 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 THR A 11 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLU A 12 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASN A 13 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU A 14 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 TYR A 15 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 PHE A 16 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLN A 17 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER A 18 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET A 19 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET B -3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B -2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B -1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B 0 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B 1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B 2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS B 3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER B 4 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER B 5 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY B 6 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 VAL B 7 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASP B 8 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU B 9 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY B 10 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 THR B 11 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLU B 12 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASN B 13 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU B 14 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 TYR B 15 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 PHE B 16 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLN B 17 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER B 18 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET B 19 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET C -3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C -2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C -1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C 0 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C 1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C 2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS C 3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER C 4 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER C 5 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY C 6 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 VAL C 7 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASP C 8 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU C 9 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY C 10 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 THR C 11 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLU C 12 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASN C 13 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU C 14 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 TYR C 15 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 PHE C 16 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLN C 17 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER C 18 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET C 19 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET D -3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D -2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D -1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D 0 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D 1 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D 2 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 HIS D 3 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER D 4 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER D 5 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY D 6 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 VAL D 7 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASP D 8 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU D 9 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLY D 10 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 THR D 11 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLU D 12 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 ASN D 13 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 LEU D 14 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 TYR D 15 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 PHE D 16 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 GLN D 17 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 SER D 18 UNP Q7Z6V5 EXPRESSION TAG SEQADV 3DH1 MET D 19 UNP Q7Z6V5 EXPRESSION TAG SEQRES 1 A 189 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 189 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLU THR SEQRES 3 A 189 GLU LYS TRP MET GLU GLU ALA MET HIS MET ALA LYS GLU SEQRES 4 A 189 ALA LEU GLU ASN THR GLU VAL PRO VAL GLY CYS LEU MET SEQRES 5 A 189 VAL TYR ASN ASN GLU VAL VAL GLY LYS GLY ARG ASN GLU SEQRES 6 A 189 VAL ASN GLN THR LYS ASN ALA THR ARG HIS ALA GLU MET SEQRES 7 A 189 VAL ALA ILE ASP GLN VAL LEU ASP TRP CYS ARG GLN SER SEQRES 8 A 189 GLY LYS SER PRO SER GLU VAL PHE GLU HIS THR VAL LEU SEQRES 9 A 189 TYR VAL THR VAL GLU PRO CYS ILE MET CYS ALA ALA ALA SEQRES 10 A 189 LEU ARG LEU MET LYS ILE PRO LEU VAL VAL TYR GLY CYS SEQRES 11 A 189 GLN ASN GLU ARG PHE GLY GLY CYS GLY SER VAL LEU ASN SEQRES 12 A 189 ILE ALA SER ALA ASP LEU PRO ASN THR GLY ARG PRO PHE SEQRES 13 A 189 GLN CYS ILE PRO GLY TYR ARG ALA GLU GLU ALA VAL GLU SEQRES 14 A 189 MET LEU LYS THR PHE TYR LYS GLN GLU ASN PRO ASN ALA SEQRES 15 A 189 PRO LYS SER LYS VAL ARG LYS SEQRES 1 B 189 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 189 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLU THR SEQRES 3 B 189 GLU LYS TRP MET GLU GLU ALA MET HIS MET ALA LYS GLU SEQRES 4 B 189 ALA LEU GLU ASN THR GLU VAL PRO VAL GLY CYS LEU MET SEQRES 5 B 189 VAL TYR ASN ASN GLU VAL VAL GLY LYS GLY ARG ASN GLU SEQRES 6 B 189 VAL ASN GLN THR LYS ASN ALA THR ARG HIS ALA GLU MET SEQRES 7 B 189 VAL ALA ILE ASP GLN VAL LEU ASP TRP CYS ARG GLN SER SEQRES 8 B 189 GLY LYS SER PRO SER GLU VAL PHE GLU HIS THR VAL LEU SEQRES 9 B 189 TYR VAL THR VAL GLU PRO CYS ILE MET CYS ALA ALA ALA SEQRES 10 B 189 LEU ARG LEU MET LYS ILE PRO LEU VAL VAL TYR GLY CYS SEQRES 11 B 189 GLN ASN GLU ARG PHE GLY GLY CYS GLY SER VAL LEU ASN SEQRES 12 B 189 ILE ALA SER ALA ASP LEU PRO ASN THR GLY ARG PRO PHE SEQRES 13 B 189 GLN CYS ILE PRO GLY TYR ARG ALA GLU GLU ALA VAL GLU SEQRES 14 B 189 MET LEU LYS THR PHE TYR LYS GLN GLU ASN PRO ASN ALA SEQRES 15 B 189 PRO LYS SER LYS VAL ARG LYS SEQRES 1 C 189 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 189 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLU THR SEQRES 3 C 189 GLU LYS TRP MET GLU GLU ALA MET HIS MET ALA LYS GLU SEQRES 4 C 189 ALA LEU GLU ASN THR GLU VAL PRO VAL GLY CYS LEU MET SEQRES 5 C 189 VAL TYR ASN ASN GLU VAL VAL GLY LYS GLY ARG ASN GLU SEQRES 6 C 189 VAL ASN GLN THR LYS ASN ALA THR ARG HIS ALA GLU MET SEQRES 7 C 189 VAL ALA ILE ASP GLN VAL LEU ASP TRP CYS ARG GLN SER SEQRES 8 C 189 GLY LYS SER PRO SER GLU VAL PHE GLU HIS THR VAL LEU SEQRES 9 C 189 TYR VAL THR VAL GLU PRO CYS ILE MET CYS ALA ALA ALA SEQRES 10 C 189 LEU ARG LEU MET LYS ILE PRO LEU VAL VAL TYR GLY CYS SEQRES 11 C 189 GLN ASN GLU ARG PHE GLY GLY CYS GLY SER VAL LEU ASN SEQRES 12 C 189 ILE ALA SER ALA ASP LEU PRO ASN THR GLY ARG PRO PHE SEQRES 13 C 189 GLN CYS ILE PRO GLY TYR ARG ALA GLU GLU ALA VAL GLU SEQRES 14 C 189 MET LEU LYS THR PHE TYR LYS GLN GLU ASN PRO ASN ALA SEQRES 15 C 189 PRO LYS SER LYS VAL ARG LYS SEQRES 1 D 189 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 189 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLU THR SEQRES 3 D 189 GLU LYS TRP MET GLU GLU ALA MET HIS MET ALA LYS GLU SEQRES 4 D 189 ALA LEU GLU ASN THR GLU VAL PRO VAL GLY CYS LEU MET SEQRES 5 D 189 VAL TYR ASN ASN GLU VAL VAL GLY LYS GLY ARG ASN GLU SEQRES 6 D 189 VAL ASN GLN THR LYS ASN ALA THR ARG HIS ALA GLU MET SEQRES 7 D 189 VAL ALA ILE ASP GLN VAL LEU ASP TRP CYS ARG GLN SER SEQRES 8 D 189 GLY LYS SER PRO SER GLU VAL PHE GLU HIS THR VAL LEU SEQRES 9 D 189 TYR VAL THR VAL GLU PRO CYS ILE MET CYS ALA ALA ALA SEQRES 10 D 189 LEU ARG LEU MET LYS ILE PRO LEU VAL VAL TYR GLY CYS SEQRES 11 D 189 GLN ASN GLU ARG PHE GLY GLY CYS GLY SER VAL LEU ASN SEQRES 12 D 189 ILE ALA SER ALA ASP LEU PRO ASN THR GLY ARG PRO PHE SEQRES 13 D 189 GLN CYS ILE PRO GLY TYR ARG ALA GLU GLU ALA VAL GLU SEQRES 14 D 189 MET LEU LYS THR PHE TYR LYS GLN GLU ASN PRO ASN ALA SEQRES 15 D 189 PRO LYS SER LYS VAL ARG LYS HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HET ZN D 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *4(H2 O) HELIX 1 1 SER A 18 ASN A 39 1 22 HELIX 2 2 GLU A 61 LYS A 66 1 6 HELIX 3 3 HIS A 71 GLY A 88 1 18 HELIX 4 4 SER A 90 GLU A 96 1 7 HELIX 5 5 CYS A 107 LYS A 118 1 12 HELIX 6 6 ARG A 159 TYR A 171 1 13 HELIX 7 7 SER B 18 ASN B 39 1 22 HELIX 8 8 GLU B 61 LYS B 66 1 6 HELIX 9 9 HIS B 71 GLY B 88 1 18 HELIX 10 10 SER B 90 GLU B 96 1 7 HELIX 11 11 CYS B 107 LYS B 118 1 12 HELIX 12 12 ARG B 159 TYR B 171 1 13 HELIX 13 13 SER C 18 ASN C 39 1 22 HELIX 14 14 GLU C 61 LYS C 66 1 6 HELIX 15 15 HIS C 71 GLY C 88 1 18 HELIX 16 16 SER C 90 GLU C 96 1 7 HELIX 17 17 CYS C 107 LYS C 118 1 12 HELIX 18 18 ARG C 159 TYR C 171 1 13 HELIX 19 19 SER D 18 ASN D 39 1 22 HELIX 20 20 GLU D 61 LYS D 66 1 6 HELIX 21 21 HIS D 71 GLY D 88 1 18 HELIX 22 22 SER D 90 GLU D 96 1 7 HELIX 23 23 CYS D 107 LYS D 118 1 12 HELIX 24 24 ARG D 159 TYR D 171 1 13 SHEET 1 A 5 GLU A 53 ARG A 59 0 SHEET 2 A 5 GLY A 45 TYR A 50 -1 N MET A 48 O GLY A 56 SHEET 3 A 5 THR A 98 VAL A 104 -1 O TYR A 101 N LEU A 47 SHEET 4 A 5 LEU A 121 CYS A 126 1 O VAL A 123 N LEU A 100 SHEET 5 A 5 GLN A 153 ILE A 155 1 O GLN A 153 N VAL A 122 SHEET 1 B 5 GLU B 53 ARG B 59 0 SHEET 2 B 5 GLY B 45 TYR B 50 -1 N MET B 48 O VAL B 55 SHEET 3 B 5 THR B 98 VAL B 104 -1 O TYR B 101 N LEU B 47 SHEET 4 B 5 LEU B 121 CYS B 126 1 O VAL B 123 N LEU B 100 SHEET 5 B 5 GLN B 153 ILE B 155 1 O GLN B 153 N VAL B 122 SHEET 1 C 5 GLU C 53 ARG C 59 0 SHEET 2 C 5 GLY C 45 TYR C 50 -1 N TYR C 50 O GLU C 53 SHEET 3 C 5 VAL C 99 VAL C 104 -1 O TYR C 101 N LEU C 47 SHEET 4 C 5 LEU C 121 CYS C 126 1 O VAL C 123 N LEU C 100 SHEET 5 C 5 GLN C 153 ILE C 155 1 O GLN C 153 N VAL C 122 SHEET 1 D 5 GLU D 53 ARG D 59 0 SHEET 2 D 5 GLY D 45 TYR D 50 -1 N TYR D 50 O GLU D 53 SHEET 3 D 5 THR D 98 VAL D 104 -1 O TYR D 101 N LEU D 47 SHEET 4 D 5 LEU D 121 CYS D 126 1 O VAL D 123 N LEU D 100 SHEET 5 D 5 GLN D 153 ILE D 155 1 O ILE D 155 N VAL D 122 LINK ND1 HIS A 71 ZN ZN A 201 1555 1555 2.00 LINK SG CYS A 107 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 110 ZN ZN A 201 1555 1555 2.59 LINK ZN ZN A 201 O HOH A 202 1555 1555 2.04 LINK ND1 HIS B 71 ZN ZN B 201 1555 1555 2.30 LINK SG CYS B 107 ZN ZN B 201 1555 1555 2.55 LINK SG CYS B 110 ZN ZN B 201 1555 1555 2.50 LINK ND1 HIS C 71 ZN ZN C 201 1555 1555 2.15 LINK SG CYS C 107 ZN ZN C 201 1555 1555 2.38 LINK SG CYS C 110 ZN ZN C 201 1555 1555 2.43 LINK ND1 HIS D 71 ZN ZN D 201 1555 1555 2.23 LINK SG CYS D 107 ZN ZN D 201 1555 1555 2.58 LINK SG CYS D 110 ZN ZN D 201 1555 1555 2.56 SITE 1 AC1 4 HIS A 71 GLU A 73 CYS A 107 CYS A 110 SITE 1 AC2 4 HIS C 71 GLU C 73 CYS C 107 CYS C 110 SITE 1 AC3 4 HIS D 71 GLU D 73 CYS D 107 CYS D 110 SITE 1 AC4 4 HIS B 71 GLU B 73 CYS B 107 CYS B 110 CRYST1 47.530 103.120 77.590 90.00 97.60 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021039 0.000000 0.002809 0.00000 SCALE2 0.000000 0.009697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013003 0.00000