PDB Short entry for 3DL2 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-08 3DL2 TITLE HEXAGONAL STRUCTURE OF THE LDH DOMAIN OF HUMAN UBIQUITIN-CONJUGATING TITLE 2 ENZYME E2-LIKE ISOFORM A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: L-LACTATE DEHYDROGENASE DOMAIN, RESIDUES 171-471; COMPND 5 SYNONYM: UEV-3, EV AND LACTATE/MALATE DEHYDROGENASE DOMAIN-CONTAINING COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: UEVLD, UEV3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS L-LACTATE DEHYDROGENASE, OXIDOREDUCTASE, UBIQUITIN-PROTEIN LIGASE, KEYWDS 2 ALTERNATIVE SPLICING, NAD, UBL CONJUGATION PATHWAY, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,E.M.NEWMAN,P.J.FINERTY JR.,C.BUTLER- AUTHOR 2 COLE,C.BOUNTRA,M.WOLKSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, AUTHOR 3 S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 30-AUG-23 3DL2 1 REMARK SEQADV REVDAT 2 24-FEB-09 3DL2 1 VERSN REVDAT 1 15-JUL-08 3DL2 0 JRNL AUTH J.R.WALKER,G.V.AVVAKUMOV,S.XUE,E.M.NEWMAN,P.J.FINERTY JR., JRNL AUTH 2 C.BUTLER-COLE,C.BOUNTRA,M.WOLKSTROM,C.H.ARROWSMITH, JRNL AUTH 3 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL STRUCTURAL INVESTIGATION INTO THE L-LACTATE DEHYDROGENASE JRNL TITL 2 DOMAIN OF HUMAN UBIQUITIN-CONJUGATING ENZYME E2-LIKE ISOFORM JRNL TITL 3 A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KLOOR,P.BORK,A.DUWE,R.KLAES,M.VON KNEBEL DOEBERITZ, REMARK 1 AUTH 2 R.RIDDER REMARK 1 TITL IDENTIFICATION AND CHARACTERIZATION OF UEV3, A HUMAN CDNA REMARK 1 TITL 2 WITH SIMILARITIES TO INACTIVE E2 UBIQUITIN-CONJUGATING REMARK 1 TITL 3 ENZYMES. REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1579 219 2002 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 12427560 REMARK 1 DOI 10.1016/S0167-4781(02)00543-2 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 45317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2402 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : 1.48000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4424 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6007 ; 1.006 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 4.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;36.869 ;25.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;13.147 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3153 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1968 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3104 ; 0.287 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 252 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2871 ; 0.348 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4642 ; 0.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1610 ; 1.143 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1365 ; 1.892 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1932 37.9141 27.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.3675 REMARK 3 T33: 0.2055 T12: -0.0635 REMARK 3 T13: -0.0107 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 3.4571 L22: 1.1525 REMARK 3 L33: 5.0125 L12: 1.1138 REMARK 3 L13: -0.8794 L23: 0.8475 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: -0.9453 S13: 0.1367 REMARK 3 S21: 0.1107 S22: -0.2291 S23: 0.1649 REMARK 3 S31: -0.4282 S32: 0.1880 S33: -0.0634 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): -31.5292 35.1801 19.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.2451 REMARK 3 T33: 0.1217 T12: 0.0219 REMARK 3 T13: -0.0411 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 8.4938 L22: 36.8415 REMARK 3 L33: 11.0338 L12: -1.6968 REMARK 3 L13: -1.2417 L23: 2.3062 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: -0.3947 S13: 0.0295 REMARK 3 S21: 0.1087 S22: -0.3135 S23: 0.0475 REMARK 3 S31: -0.5174 S32: -0.7781 S33: 0.2246 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): -32.3857 29.8298 28.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.1835 REMARK 3 T33: 0.1716 T12: -0.0663 REMARK 3 T13: 0.0054 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 8.8790 L22: 1.1005 REMARK 3 L33: 15.1711 L12: -2.0908 REMARK 3 L13: -2.7341 L23: -1.8426 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: 0.3115 S13: -0.3940 REMARK 3 S21: -0.7169 S22: 0.0327 S23: 0.5087 REMARK 3 S31: 0.1435 S32: -0.6793 S33: 0.1268 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -26.4388 28.4731 13.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.1093 REMARK 3 T33: 0.2627 T12: 0.0275 REMARK 3 T13: -0.0706 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 6.6048 L22: 0.4940 REMARK 3 L33: 3.6469 L12: 1.2488 REMARK 3 L13: 0.7645 L23: 1.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.1536 S12: -0.2398 S13: -0.7768 REMARK 3 S21: 0.0036 S22: -0.0847 S23: -0.0819 REMARK 3 S31: 0.3092 S32: -0.0513 S33: -0.0689 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -21.8816 28.8366 6.5284 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1013 REMARK 3 T33: 0.1742 T12: 0.0317 REMARK 3 T13: -0.0420 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.7804 L22: 2.8356 REMARK 3 L33: 2.4470 L12: 0.5103 REMARK 3 L13: 0.6785 L23: 1.4315 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.1301 S13: -0.2843 REMARK 3 S21: -0.0804 S22: 0.0415 S23: -0.2038 REMARK 3 S31: -0.0072 S32: 0.2041 S33: -0.1254 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9660 42.4299 17.6992 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.1940 REMARK 3 T33: 0.2220 T12: -0.0448 REMARK 3 T13: 0.0069 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 6.8131 L22: 1.2102 REMARK 3 L33: 3.5186 L12: 2.3644 REMARK 3 L13: 4.8352 L23: 1.8622 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: -0.1221 S13: 0.1901 REMARK 3 S21: -0.2176 S22: -0.0176 S23: 0.0142 REMARK 3 S31: -0.3676 S32: -0.1664 S33: 0.1237 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0744 48.6942 14.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.2918 REMARK 3 T33: 0.3929 T12: -0.1212 REMARK 3 T13: -0.0468 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 6.0202 L22: 2.4108 REMARK 3 L33: 30.2602 L12: 3.8097 REMARK 3 L13: 13.4058 L23: 8.4872 REMARK 3 S TENSOR REMARK 3 S11: -1.5264 S12: 0.2634 S13: 1.2379 REMARK 3 S21: -1.5585 S22: 0.5059 S23: 0.1186 REMARK 3 S31: -3.6796 S32: 0.3319 S33: 1.0206 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 347 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8684 42.0105 11.2547 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.3285 REMARK 3 T33: 0.1595 T12: -0.0669 REMARK 3 T13: 0.0572 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 12.4142 L22: 15.6704 REMARK 3 L33: 3.9915 L12: 11.2925 REMARK 3 L13: 0.6261 L23: -1.7424 REMARK 3 S TENSOR REMARK 3 S11: 0.1982 S12: 0.0592 S13: 0.3621 REMARK 3 S21: 0.1310 S22: -0.2838 S23: -0.2981 REMARK 3 S31: -0.5946 S32: 0.7450 S33: 0.0856 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 363 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3851 42.0239 17.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1558 REMARK 3 T33: 0.2177 T12: -0.0189 REMARK 3 T13: -0.0228 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 11.7196 L22: 13.6488 REMARK 3 L33: 4.6365 L12: 11.0474 REMARK 3 L13: -5.8321 L23: -6.4051 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.4911 S13: -0.1107 REMARK 3 S21: -0.1127 S22: 0.2112 S23: 0.0108 REMARK 3 S31: 0.0308 S32: -0.2255 S33: -0.1953 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4436 41.2200 9.8533 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.1506 REMARK 3 T33: 0.1917 T12: -0.0438 REMARK 3 T13: -0.0213 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 3.5252 L22: 1.8950 REMARK 3 L33: 4.4880 L12: 0.4245 REMARK 3 L13: 0.0971 L23: 0.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.3435 S13: 0.1367 REMARK 3 S21: -0.3033 S22: -0.0287 S23: -0.0867 REMARK 3 S31: -0.4638 S32: 0.1814 S33: 0.0430 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5796 33.2228 1.8611 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.3520 REMARK 3 T33: 0.0313 T12: -0.0295 REMARK 3 T13: 0.0689 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 7.4501 L22: 5.9845 REMARK 3 L33: 4.4127 L12: -1.0026 REMARK 3 L13: 0.6028 L23: 1.7083 REMARK 3 S TENSOR REMARK 3 S11: -0.1583 S12: 0.8486 S13: -0.1665 REMARK 3 S21: -0.3032 S22: 0.4382 S23: -0.8282 REMARK 3 S31: -0.1902 S32: 0.9707 S33: -0.2799 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 169 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0315 41.6376 33.4471 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.2516 REMARK 3 T33: 0.2031 T12: -0.0740 REMARK 3 T13: 0.0034 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.9170 L22: 2.4831 REMARK 3 L33: 4.7987 L12: 1.2155 REMARK 3 L13: 0.1288 L23: -1.6258 REMARK 3 S TENSOR REMARK 3 S11: -0.3854 S12: 0.4429 S13: 0.2250 REMARK 3 S21: -0.5001 S22: 0.4053 S23: 0.0013 REMARK 3 S31: -0.1543 S32: -0.3379 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 215 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8028 43.1560 32.2181 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2656 REMARK 3 T33: 0.2181 T12: -0.0265 REMARK 3 T13: -0.0115 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4084 L22: 4.5153 REMARK 3 L33: 15.6730 L12: 1.2563 REMARK 3 L13: -1.6982 L23: -2.8554 REMARK 3 S TENSOR REMARK 3 S11: -0.2716 S12: -0.5361 S13: 0.2180 REMARK 3 S21: 0.4064 S22: 0.0549 S23: -0.3822 REMARK 3 S31: -0.6373 S32: 0.4154 S33: 0.2167 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9876 36.9418 46.3895 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1642 REMARK 3 T33: 0.2714 T12: 0.0662 REMARK 3 T13: -0.0142 T23: -0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.7528 L22: 6.2518 REMARK 3 L33: 4.0896 L12: 4.0640 REMARK 3 L13: 0.7945 L23: 0.1866 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: 0.0642 S13: -0.3950 REMARK 3 S21: -0.0006 S22: 0.1262 S23: -0.8180 REMARK 3 S31: 0.1740 S32: 0.2252 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 264 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5944 33.0609 52.8815 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1554 REMARK 3 T33: 0.2018 T12: 0.0506 REMARK 3 T13: -0.0135 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.2017 L22: 2.6308 REMARK 3 L33: 2.4711 L12: 1.0004 REMARK 3 L13: 1.3272 L23: 0.4328 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.0125 S13: -0.3667 REMARK 3 S21: 0.1246 S22: 0.0988 S23: -0.1990 REMARK 3 S31: 0.1609 S32: -0.0100 S33: -0.1695 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 305 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8553 29.2460 45.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.2139 REMARK 3 T33: 0.1815 T12: 0.0092 REMARK 3 T13: 0.0511 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 4.8114 L22: 3.2883 REMARK 3 L33: 3.5998 L12: 3.2250 REMARK 3 L13: 3.9092 L23: 3.2405 REMARK 3 S TENSOR REMARK 3 S11: -0.1856 S12: -0.2690 S13: -0.0551 REMARK 3 S21: -0.0375 S22: 0.1094 S23: 0.0352 REMARK 3 S31: -0.2387 S32: -0.2979 S33: 0.0762 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 336 B 356 REMARK 3 ORIGIN FOR THE GROUP (A): -34.9803 20.8949 46.4827 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.2315 REMARK 3 T33: 0.1588 T12: -0.1127 REMARK 3 T13: 0.0825 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 6.9765 L22: 5.3807 REMARK 3 L33: 11.9777 L12: 5.9128 REMARK 3 L13: 5.6994 L23: 3.1856 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.5830 S13: -0.0823 REMARK 3 S21: 0.2063 S22: -0.1067 S23: 0.1792 REMARK 3 S31: 0.2697 S32: -1.0137 S33: 0.0067 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 357 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): -45.2545 15.9240 45.8191 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1525 REMARK 3 T33: 0.1883 T12: -0.0127 REMARK 3 T13: 0.0424 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 21.4225 L22: 2.6718 REMARK 3 L33: 11.4718 L12: 0.1223 REMARK 3 L13: -10.7985 L23: 0.9800 REMARK 3 S TENSOR REMARK 3 S11: 0.5822 S12: -0.5443 S13: 0.6853 REMARK 3 S21: 0.2008 S22: -0.0955 S23: 0.1717 REMARK 3 S31: -0.4860 S32: -0.1010 S33: -0.4868 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 379 B 387 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0665 19.6088 36.1251 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.2385 REMARK 3 T33: 0.2985 T12: -0.0311 REMARK 3 T13: 0.0007 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 15.5219 L22: 25.7747 REMARK 3 L33: 0.8332 L12: 18.2831 REMARK 3 L13: -1.3207 L23: 0.1924 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.5677 S13: -1.2076 REMARK 3 S21: 0.1097 S22: 0.2033 S23: -1.5249 REMARK 3 S31: -0.3366 S32: 0.0826 S33: -0.1214 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 388 B 437 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0318 32.4044 50.3045 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.2270 REMARK 3 T33: 0.1730 T12: 0.0163 REMARK 3 T13: 0.0384 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.5405 L22: 2.3779 REMARK 3 L33: 4.1121 L12: 0.8583 REMARK 3 L13: 0.4578 L23: 0.4495 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.3440 S13: 0.0303 REMARK 3 S21: 0.2762 S22: -0.0275 S23: 0.1827 REMARK 3 S31: -0.0714 S32: -0.5017 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 438 B 456 REMARK 3 ORIGIN FOR THE GROUP (A): -35.9706 21.3920 56.9718 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.4702 REMARK 3 T33: 0.2427 T12: -0.2589 REMARK 3 T13: 0.1342 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 5.1655 L22: 18.0246 REMARK 3 L33: 2.6497 L12: -2.1544 REMARK 3 L13: 2.6221 L23: -0.5107 REMARK 3 S TENSOR REMARK 3 S11: 0.3980 S12: -0.9059 S13: -0.6798 REMARK 3 S21: 0.4885 S22: -0.1144 S23: 2.3835 REMARK 3 S31: 0.7457 S32: -1.3877 S33: -0.2836 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 457 B 471 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4690 19.7220 59.8284 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 0.0406 REMARK 3 T33: 0.2128 T12: 0.0062 REMARK 3 T13: -0.1359 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 32.3122 L22: 7.8717 REMARK 3 L33: 7.4451 L12: 14.4784 REMARK 3 L13: 1.2907 L23: -2.6208 REMARK 3 S TENSOR REMARK 3 S11: 0.8954 S12: -0.6715 S13: -1.0575 REMARK 3 S21: 0.9823 S22: -0.6611 S23: -0.8608 REMARK 3 S31: 0.8904 S32: 0.6314 S33: -0.2343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 3DL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.9290 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM/POTASSIUM PHOSPHATE PH REMARK 280 6.5, 0.2 M SODIUM CHLORIDE, 0.002 M DITHIOTHREITOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290.9K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.94533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.97267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.95900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.98633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.93167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 174 REMARK 465 ALA A 175 REMARK 465 ASN A 176 REMARK 465 HIS A 177 REMARK 465 GLU A 178 REMARK 465 ASN A 179 REMARK 465 LYS A 180 REMARK 465 LEU A 256 REMARK 465 GLY A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 GLN A 360 REMARK 465 LYS A 447 REMARK 465 GLU A 448 REMARK 465 TRP B 174 REMARK 465 ALA B 175 REMARK 465 ASN B 176 REMARK 465 HIS B 177 REMARK 465 GLU B 178 REMARK 465 ASN B 179 REMARK 465 LYS B 180 REMARK 465 THR B 181 REMARK 465 LEU B 256 REMARK 465 GLY B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 465 SER B 339 REMARK 465 GLY B 340 REMARK 465 THR B 445 REMARK 465 GLU B 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 172 CE NZ REMARK 470 LYS A 247 CD CE NZ REMARK 470 GLN A 337 CG CD OE1 NE2 REMARK 470 GLU A 351 CD OE1 OE2 REMARK 470 GLU A 362 CG CD OE1 OE2 REMARK 470 ARG A 386 CZ NH1 NH2 REMARK 470 ASP A 420 CG OD1 OD2 REMARK 470 LYS A 443 CD CE NZ REMARK 470 LEU A 446 CG CD1 CD2 REMARK 470 GLU A 453 CD OE1 OE2 REMARK 470 SER A 464 OG REMARK 470 LYS A 470 CD CE NZ REMARK 470 GLU B 217 CD OE1 OE2 REMARK 470 LYS B 220 CD CE NZ REMARK 470 GLN B 337 CG CD OE1 NE2 REMARK 470 LYS B 341 CB CG CD CE NZ REMARK 470 GLN B 360 CG CD OE1 NE2 REMARK 470 GLU B 361 CD OE1 OE2 REMARK 470 LYS B 443 CD CE NZ REMARK 470 LYS B 447 CD CE NZ REMARK 470 ASP B 449 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 276 -58.74 -126.36 REMARK 500 LEU B 276 -60.48 -127.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 230 OD1 REMARK 620 2 LEU A 231 O 96.3 REMARK 620 3 VAL A 234 O 150.1 80.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 230 OD1 REMARK 620 2 LEU B 231 O 98.7 REMARK 620 3 VAL B 234 O 151.7 80.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I6T RELATED DB: PDB REMARK 900 ORTHORHOMBIC STRUCTURE OF THE LDH DOMAIN OF HUMAN UBIQUITIN- REMARK 900 CONJUGATING ENZYME E2-LIKE ISOFORM A DBREF 3DL2 A 171 471 UNP Q8IX04 UEVLD_HUMAN 171 471 DBREF 3DL2 B 171 471 UNP Q8IX04 UEVLD_HUMAN 171 471 SEQADV 3DL2 GLY A 169 UNP Q8IX04 EXPRESSION TAG SEQADV 3DL2 SER A 170 UNP Q8IX04 EXPRESSION TAG SEQADV 3DL2 GLY B 169 UNP Q8IX04 EXPRESSION TAG SEQADV 3DL2 SER B 170 UNP Q8IX04 EXPRESSION TAG SEQRES 1 A 303 GLY SER SER LYS SER TRP ALA ASN HIS GLU ASN LYS THR SEQRES 2 A 303 VAL ASN LYS ILE THR VAL VAL GLY GLY GLY GLU LEU GLY SEQRES 3 A 303 ILE ALA CYS THR LEU ALA ILE SER ALA LYS GLY ILE ALA SEQRES 4 A 303 ASP ARG LEU VAL LEU LEU ASP LEU SER GLU GLY THR LYS SEQRES 5 A 303 GLY ALA THR MET ASP LEU GLU ILE PHE ASN LEU PRO ASN SEQRES 6 A 303 VAL GLU ILE SER LYS ASP LEU SER ALA SER ALA HIS SER SEQRES 7 A 303 LYS VAL VAL ILE PHE THR VAL ASN SER LEU GLY SER SER SEQRES 8 A 303 GLN SER TYR LEU ASP VAL VAL GLN SER ASN VAL ASP MET SEQRES 9 A 303 PHE ARG ALA LEU VAL PRO ALA LEU GLY HIS TYR SER GLN SEQRES 10 A 303 HIS SER VAL LEU LEU VAL ALA SER GLN PRO VAL GLU ILE SEQRES 11 A 303 MET THR TYR VAL THR TRP LYS LEU SER THR PHE PRO ALA SEQRES 12 A 303 ASN ARG VAL ILE GLY ILE GLY CYS ASN LEU ASP SER GLN SEQRES 13 A 303 ARG LEU GLN TYR ILE ILE THR ASN VAL LEU LYS ALA GLN SEQRES 14 A 303 THR SER GLY LYS GLU VAL TRP VAL ILE GLY GLU GLN GLY SEQRES 15 A 303 GLU ASP LYS VAL LEU THR TRP SER GLY GLN GLU GLU VAL SEQRES 16 A 303 VAL SER HIS THR SER GLN VAL GLN LEU SER ASN ARG ALA SEQRES 17 A 303 MET GLU LEU LEU ARG VAL LYS GLY GLN ARG SER TRP SER SEQRES 18 A 303 VAL GLY LEU SER VAL ALA ASP MET VAL ASP SER ILE VAL SEQRES 19 A 303 ASN ASN LYS LYS LYS VAL HIS SER VAL SER ALA LEU ALA SEQRES 20 A 303 LYS GLY TYR TYR ASP ILE ASN SER GLU VAL PHE LEU SER SEQRES 21 A 303 LEU PRO CYS ILE LEU GLY THR ASN GLY VAL SER GLU VAL SEQRES 22 A 303 ILE LYS THR THR LEU LYS GLU ASP THR VAL THR GLU LYS SEQRES 23 A 303 LEU GLN SER SER ALA SER SER ILE HIS SER LEU GLN GLN SEQRES 24 A 303 GLN LEU LYS LEU SEQRES 1 B 303 GLY SER SER LYS SER TRP ALA ASN HIS GLU ASN LYS THR SEQRES 2 B 303 VAL ASN LYS ILE THR VAL VAL GLY GLY GLY GLU LEU GLY SEQRES 3 B 303 ILE ALA CYS THR LEU ALA ILE SER ALA LYS GLY ILE ALA SEQRES 4 B 303 ASP ARG LEU VAL LEU LEU ASP LEU SER GLU GLY THR LYS SEQRES 5 B 303 GLY ALA THR MET ASP LEU GLU ILE PHE ASN LEU PRO ASN SEQRES 6 B 303 VAL GLU ILE SER LYS ASP LEU SER ALA SER ALA HIS SER SEQRES 7 B 303 LYS VAL VAL ILE PHE THR VAL ASN SER LEU GLY SER SER SEQRES 8 B 303 GLN SER TYR LEU ASP VAL VAL GLN SER ASN VAL ASP MET SEQRES 9 B 303 PHE ARG ALA LEU VAL PRO ALA LEU GLY HIS TYR SER GLN SEQRES 10 B 303 HIS SER VAL LEU LEU VAL ALA SER GLN PRO VAL GLU ILE SEQRES 11 B 303 MET THR TYR VAL THR TRP LYS LEU SER THR PHE PRO ALA SEQRES 12 B 303 ASN ARG VAL ILE GLY ILE GLY CYS ASN LEU ASP SER GLN SEQRES 13 B 303 ARG LEU GLN TYR ILE ILE THR ASN VAL LEU LYS ALA GLN SEQRES 14 B 303 THR SER GLY LYS GLU VAL TRP VAL ILE GLY GLU GLN GLY SEQRES 15 B 303 GLU ASP LYS VAL LEU THR TRP SER GLY GLN GLU GLU VAL SEQRES 16 B 303 VAL SER HIS THR SER GLN VAL GLN LEU SER ASN ARG ALA SEQRES 17 B 303 MET GLU LEU LEU ARG VAL LYS GLY GLN ARG SER TRP SER SEQRES 18 B 303 VAL GLY LEU SER VAL ALA ASP MET VAL ASP SER ILE VAL SEQRES 19 B 303 ASN ASN LYS LYS LYS VAL HIS SER VAL SER ALA LEU ALA SEQRES 20 B 303 LYS GLY TYR TYR ASP ILE ASN SER GLU VAL PHE LEU SER SEQRES 21 B 303 LEU PRO CYS ILE LEU GLY THR ASN GLY VAL SER GLU VAL SEQRES 22 B 303 ILE LYS THR THR LEU LYS GLU ASP THR VAL THR GLU LYS SEQRES 23 B 303 LEU GLN SER SER ALA SER SER ILE HIS SER LEU GLN GLN SEQRES 24 B 303 GLN LEU LYS LEU HET NA A 501 1 HET PO4 A 502 5 HET NA B 501 1 HET PO4 B 502 5 HET PO4 B 503 5 HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 NA 2(NA 1+) FORMUL 4 PO4 3(O4 P 3-) FORMUL 8 HOH *203(H2 O) HELIX 1 1 GLY A 191 GLY A 205 1 15 HELIX 2 2 GLU A 217 GLY A 221 5 5 HELIX 3 3 THR A 223 ASN A 230 1 8 HELIX 4 4 ASP A 239 ALA A 244 5 6 HELIX 5 5 SER A 261 ALA A 275 1 15 HELIX 6 6 LEU A 276 SER A 284 1 9 HELIX 7 7 PRO A 295 THR A 308 1 14 HELIX 8 8 PRO A 310 ASN A 312 5 3 HELIX 9 9 CYS A 319 ASN A 332 1 14 HELIX 10 10 SER A 365 VAL A 382 1 18 HELIX 11 11 ARG A 386 ASN A 403 1 18 HELIX 12 12 ASP A 449 GLN A 468 1 20 HELIX 13 13 GLY B 191 GLY B 205 1 15 HELIX 14 14 GLU B 217 GLY B 221 5 5 HELIX 15 15 THR B 223 ASN B 230 1 8 HELIX 16 16 ASP B 239 ALA B 244 5 6 HELIX 17 17 SER B 261 ALA B 275 1 15 HELIX 18 18 LEU B 276 SER B 284 1 9 HELIX 19 19 PRO B 295 THR B 308 1 14 HELIX 20 20 PRO B 310 ASN B 312 5 3 HELIX 21 21 CYS B 319 ASN B 332 1 14 HELIX 22 22 SER B 365 VAL B 382 1 18 HELIX 23 23 ARG B 386 ASN B 403 1 18 HELIX 24 24 ASP B 449 LEU B 469 1 21 SHEET 1 A 6 VAL A 234 SER A 237 0 SHEET 2 A 6 ARG A 209 LEU A 213 1 N LEU A 210 O GLU A 235 SHEET 3 A 6 LYS A 184 VAL A 188 1 N VAL A 187 O LEU A 213 SHEET 4 A 6 VAL A 248 PHE A 251 1 O ILE A 250 N VAL A 188 SHEET 5 A 6 VAL A 288 VAL A 291 1 O LEU A 290 N VAL A 249 SHEET 6 A 6 VAL A 314 GLY A 316 1 O ILE A 315 N VAL A 291 SHEET 1 B 2 GLU A 342 ILE A 346 0 SHEET 2 B 2 VAL A 354 SER A 358 -1 O SER A 358 N GLU A 342 SHEET 1 C 3 LYS A 407 LEU A 414 0 SHEET 2 C 3 PHE A 426 GLY A 434 -1 O CYS A 431 N HIS A 409 SHEET 3 C 3 GLY A 437 VAL A 441 -1 O GLU A 440 N ILE A 432 SHEET 1 D 6 VAL B 234 SER B 237 0 SHEET 2 D 6 ARG B 209 LEU B 213 1 N LEU B 210 O GLU B 235 SHEET 3 D 6 LYS B 184 VAL B 188 1 N VAL B 187 O LEU B 213 SHEET 4 D 6 VAL B 248 PHE B 251 1 O ILE B 250 N VAL B 188 SHEET 5 D 6 VAL B 288 VAL B 291 1 O LEU B 290 N VAL B 249 SHEET 6 D 6 VAL B 314 GLY B 316 1 O ILE B 315 N VAL B 291 SHEET 1 E 2 VAL B 343 ILE B 346 0 SHEET 2 E 2 VAL B 354 TRP B 357 -1 O THR B 356 N TRP B 344 SHEET 1 F 3 LYS B 407 LEU B 414 0 SHEET 2 F 3 PHE B 426 GLY B 434 -1 O CYS B 431 N HIS B 409 SHEET 3 F 3 GLY B 437 VAL B 441 -1 O GLU B 440 N ILE B 432 LINK OD1 ASN A 230 NA NA A 501 1555 1555 2.77 LINK O LEU A 231 NA NA A 501 1555 1555 2.81 LINK O VAL A 234 NA NA A 501 1555 1555 2.80 LINK OD1 ASN B 230 NA NA B 501 1555 1555 2.66 LINK O LEU B 231 NA NA B 501 1555 1555 2.80 LINK O VAL B 234 NA NA B 501 1555 1555 2.87 CISPEP 1 GLN A 294 PRO A 295 0 -5.30 CISPEP 2 GLN B 294 PRO B 295 0 -6.01 SITE 1 AC1 4 ASN A 230 LEU A 231 VAL A 234 HOH A 557 SITE 1 AC2 7 HIS A 245 HIS A 286 HOH A 532 HOH A 567 SITE 2 AC2 7 SER B 365 HIS B 366 THR B 367 SITE 1 AC3 3 ASN B 230 LEU B 231 VAL B 234 SITE 1 AC4 7 SER A 365 HIS A 366 THR A 367 HIS B 245 SITE 2 AC4 7 HIS B 286 HOH B 530 HOH B 550 SITE 1 AC5 4 HIS A 286 HOH A 565 HIS B 286 HOH B 529 CRYST1 105.603 105.603 131.918 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009469 0.005467 0.000000 0.00000 SCALE2 0.000000 0.010934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007580 0.00000