PDB Short entry for 3DQX HEADER TRANSFERASE 09-JUL-08 3DQX TITLE CHICKEN C-SRC KINASE DOMAIN IN COMPLEX WITH ATPGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHICKEN C-SRC KINASE DOMAIN 251-533; COMPND 5 SYNONYM: PP60C-SRC, P60-SRC, C-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SRC, KINASE, ACTIVE, ATP-BINDING, LIPOPROTEIN, MYRISTATE, NUCLEOTIDE- KEYWDS 2 BINDING, PHOSPHOPROTEIN, PROTO-ONCOGENE, SH2 DOMAIN, SH3 DOMAIN, KEYWDS 3 TRANSFERASE, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AZAM,M.A.SEELIGER,N.GRAY,J.KURIYAN,G.Q.DALEY REVDAT 5 30-AUG-23 3DQX 1 REMARK SEQADV REVDAT 4 13-JUL-11 3DQX 1 VERSN REVDAT 3 24-FEB-09 3DQX 1 VERSN REVDAT 2 21-OCT-08 3DQX 1 JRNL REVDAT 1 23-SEP-08 3DQX 0 JRNL AUTH M.AZAM,M.A.SEELIGER,N.S.GRAY,J.KURIYAN,G.Q.DALEY JRNL TITL ACTIVATION OF TYROSINE KINASES BY MUTATION OF THE GATEKEEPER JRNL TITL 2 THREONINE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 1109 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18794843 JRNL DOI 10.1038/NSMB.1486 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 25766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.350 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4453 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6038 ; 1.263 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 5.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;36.023 ;23.668 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;17.894 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.686 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3358 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2081 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2977 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.311 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2669 ; 0.481 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4310 ; 0.917 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 1.648 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1728 ; 2.592 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7710 -1.2220 -35.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.7103 T22: 0.0040 REMARK 3 T33: 0.1449 T12: -0.2486 REMARK 3 T13: -0.0375 T23: 0.1699 REMARK 3 L TENSOR REMARK 3 L11: 2.7589 L22: 8.3365 REMARK 3 L33: 6.5178 L12: -1.0352 REMARK 3 L13: 0.1185 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.7074 S13: 0.9612 REMARK 3 S21: -0.5822 S22: -0.0544 S23: 0.1458 REMARK 3 S31: -2.5454 S32: 0.4582 S33: 0.1724 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 259 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3870 -47.2180 -67.4810 REMARK 3 T TENSOR REMARK 3 T11: 0.5703 T22: 0.0054 REMARK 3 T33: 0.1180 T12: -0.1757 REMARK 3 T13: -0.0785 T23: -0.1263 REMARK 3 L TENSOR REMARK 3 L11: 2.8509 L22: 9.5713 REMARK 3 L33: 6.3575 L12: -2.3212 REMARK 3 L13: 0.6183 L23: 0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.2659 S12: 0.6172 S13: -0.9498 REMARK 3 S21: -0.8946 S22: -0.0760 S23: 0.4256 REMARK 3 S31: 2.3312 S32: -0.2480 S33: -0.1898 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 361 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6830 -13.3620 -24.8920 REMARK 3 T TENSOR REMARK 3 T11: -0.0559 T22: -0.2916 REMARK 3 T33: -0.2085 T12: 0.0022 REMARK 3 T13: 0.0421 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.1636 L22: 3.9152 REMARK 3 L33: 7.0238 L12: -1.5429 REMARK 3 L13: 1.0065 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: -0.2326 S12: 0.0697 S13: 0.3969 REMARK 3 S21: 0.1730 S22: 0.0527 S23: -0.0232 REMARK 3 S31: -1.2485 S32: 0.0594 S33: 0.1799 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 361 B 399 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6700 -35.3680 -56.7250 REMARK 3 T TENSOR REMARK 3 T11: -0.0938 T22: -0.2411 REMARK 3 T33: -0.2364 T12: -0.0081 REMARK 3 T13: -0.0260 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.6469 L22: 4.9952 REMARK 3 L33: 6.6158 L12: -0.6707 REMARK 3 L13: -1.0993 L23: 0.8372 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: -0.0447 S13: -0.3117 REMARK 3 S21: 0.0858 S22: 0.1174 S23: 0.0135 REMARK 3 S31: 1.2573 S32: -0.1504 S33: 0.0549 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 400 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7020 -7.8810 -29.2310 REMARK 3 T TENSOR REMARK 3 T11: 0.3187 T22: -0.0400 REMARK 3 T33: 0.1289 T12: 0.2761 REMARK 3 T13: -0.0264 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 15.8512 L22: 4.1084 REMARK 3 L33: 5.1737 L12: -2.9408 REMARK 3 L13: 1.7377 L23: -0.6359 REMARK 3 S TENSOR REMARK 3 S11: -0.1455 S12: 0.2644 S13: 0.6254 REMARK 3 S21: -0.2995 S22: 0.1360 S23: 0.9285 REMARK 3 S31: -1.5547 S32: -0.9209 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 424 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8390 -41.0340 -61.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.0857 REMARK 3 T33: 0.2496 T12: 0.2438 REMARK 3 T13: 0.0322 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 15.5527 L22: 7.0445 REMARK 3 L33: 6.8727 L12: 0.7753 REMARK 3 L13: 0.8059 L23: -0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.3390 S13: -1.4361 REMARK 3 S21: -0.4416 S22: -0.0049 S23: -1.6166 REMARK 3 S31: 1.5855 S32: 1.4574 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 425 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3200 -25.9370 -26.5360 REMARK 3 T TENSOR REMARK 3 T11: -0.3568 T22: -0.1995 REMARK 3 T33: -0.1665 T12: 0.0111 REMARK 3 T13: 0.0610 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.9015 L22: 2.3705 REMARK 3 L33: 7.6078 L12: -0.1606 REMARK 3 L13: 1.7677 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: 0.0092 S13: -0.3375 REMARK 3 S21: -0.0107 S22: 0.1668 S23: 0.3414 REMARK 3 S31: 0.1956 S32: -0.6677 S33: -0.2082 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 425 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9700 -22.7310 -58.2250 REMARK 3 T TENSOR REMARK 3 T11: -0.3815 T22: -0.1814 REMARK 3 T33: -0.1650 T12: 0.0018 REMARK 3 T13: -0.0163 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 2.6263 L22: 2.8627 REMARK 3 L33: 7.6302 L12: -0.4047 REMARK 3 L13: -1.3832 L23: 0.3225 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0062 S13: 0.3409 REMARK 3 S21: -0.0126 S22: 0.1950 S23: -0.4293 REMARK 3 S31: -0.2193 S32: 0.6329 S33: -0.2584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20500 REMARK 200 R SYM FOR SHELL (I) : 0.20500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2SRC WITH DELETION OF RESIDUES 300-315 AND 400-425 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 50 MM AMMONIUM ACETATE, REMARK 280 100 MM BIS-TRIS PH 5.5, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.57500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 ALA B 256 REMARK 465 LYS B 257 REMARK 465 ASP B 258 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 270 -66.88 -92.37 REMARK 500 PHE A 278 -74.86 -55.57 REMARK 500 THR A 289 -43.86 -136.56 REMARK 500 PRO A 299 79.78 -58.33 REMARK 500 ARG A 385 -17.67 81.53 REMARK 500 ALA A 422 -48.37 -151.76 REMARK 500 PRO A 425 94.40 -51.07 REMARK 500 ILE A 426 -38.46 -38.43 REMARK 500 GLU A 486 -3.61 68.30 REMARK 500 GLU B 270 -73.05 -85.54 REMARK 500 GLN B 275 -153.14 -150.13 REMARK 500 SER B 303 133.44 -34.46 REMARK 500 ARG B 385 -6.08 83.73 REMARK 500 ASP B 386 32.89 -144.30 REMARK 500 ALA B 403 -167.74 -123.08 REMARK 500 ALA B 422 -167.13 -74.88 REMARK 500 GLU B 486 -7.36 76.28 REMARK 500 GLU B 524 62.64 -118.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DQW RELATED DB: PDB DBREF 3DQX A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 3DQX B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 3DQX GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 3DQX HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 3DQX MET A 250 UNP P00523 EXPRESSION TAG SEQADV 3DQX GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 3DQX HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 3DQX MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET AMP A 1 23 HET AMP B 2 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 5 HOH *188(H2 O) HELIX 1 1 PRO A 263 GLU A 265 5 3 HELIX 2 2 SER A 303 LYS A 315 1 13 HELIX 3 3 LEU A 346 GLY A 352 1 7 HELIX 4 4 ARG A 359 MET A 380 1 22 HELIX 5 5 ARG A 388 ALA A 390 5 3 HELIX 6 6 GLU A 396 LEU A 398 5 3 HELIX 7 7 ALA A 430 GLY A 437 1 8 HELIX 8 8 THR A 440 THR A 457 1 18 HELIX 9 9 VAL A 467 ARG A 477 1 11 HELIX 10 10 PRO A 488 TRP A 499 1 12 HELIX 11 11 ASP A 502 ARG A 506 5 5 HELIX 12 12 THR A 508 ASP A 518 1 11 HELIX 13 13 ASP A 518 THR A 523 1 6 HELIX 14 14 PRO B 263 GLU B 265 5 3 HELIX 15 15 SER B 303 LEU B 308 1 6 HELIX 16 16 LEU B 308 LEU B 317 1 10 HELIX 17 17 LEU B 346 GLY B 352 1 7 HELIX 18 18 MET B 354 LEU B 358 5 5 HELIX 19 19 ARG B 359 MET B 380 1 22 HELIX 20 20 ARG B 388 ALA B 390 5 3 HELIX 21 21 GLU B 396 LEU B 398 5 3 HELIX 22 22 ASP B 404 ALA B 408 5 5 HELIX 23 23 ALA B 430 GLY B 437 1 8 HELIX 24 24 THR B 440 LYS B 458 1 19 HELIX 25 25 VAL B 467 GLY B 478 1 12 HELIX 26 26 PRO B 488 TRP B 499 1 12 HELIX 27 27 ASP B 502 ARG B 506 5 5 HELIX 28 28 THR B 508 ASP B 518 1 11 HELIX 29 29 ASP B 518 THR B 523 1 6 SHEET 1 A 5 LEU A 267 GLN A 275 0 SHEET 2 A 5 GLY A 279 TRP A 286 -1 O MET A 283 N VAL A 271 SHEET 3 A 5 THR A 290 LEU A 297 -1 O VAL A 292 N GLY A 284 SHEET 4 A 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295 SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 B 3 GLY A 344 SER A 345 0 SHEET 2 B 3 ILE A 392 VAL A 394 -1 O VAL A 394 N GLY A 344 SHEET 3 B 3 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 C 2 TYR A 382 VAL A 383 0 SHEET 2 C 2 ARG A 409 LEU A 410 -1 O ARG A 409 N VAL A 383 SHEET 1 D 5 LEU B 267 GLY B 274 0 SHEET 2 D 5 VAL B 281 TRP B 286 -1 O VAL B 281 N LEU B 273 SHEET 3 D 5 THR B 290 THR B 296 -1 O VAL B 292 N GLY B 284 SHEET 4 D 5 TYR B 335 GLU B 339 -1 O THR B 338 N ALA B 293 SHEET 5 D 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 E 3 GLY B 344 SER B 345 0 SHEET 2 E 3 ILE B 392 VAL B 394 -1 O VAL B 394 N GLY B 344 SHEET 3 E 3 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 SHEET 1 F 2 TYR B 382 VAL B 383 0 SHEET 2 F 2 ARG B 409 LEU B 410 -1 O ARG B 409 N VAL B 383 CISPEP 1 GLU A 332 PRO A 333 0 2.78 CISPEP 2 GLU B 332 PRO B 333 0 6.30 SITE 1 AC1 7 ALA A 293 LYS A 295 THR A 338 GLU A 339 SITE 2 AC1 7 MET A 341 LEU A 393 ASP A 404 SITE 1 AC2 7 ALA B 293 LYS B 295 THR B 338 GLU B 339 SITE 2 AC2 7 MET B 341 LEU B 393 ASP B 404 CRYST1 42.507 119.150 63.676 90.00 90.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023526 0.000000 0.000148 0.00000 SCALE2 0.000000 0.008393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015705 0.00000