PDB Short entry for 3DUP HEADER HYDROLASE 17-JUL-08 3DUP TITLE CRYSTAL STRUCTURE OF MUTT/NUDIX FAMILY HYDROLASE FROM RHODOSPIRILLUM TITLE 2 RUBRUM ATCC 11170 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM ATCC 11170; SOURCE 3 ORGANISM_TAXID: 269796; SOURCE 4 GENE: RRU_A0214; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUDIX SUPERFAMILY HYDROLASE, HYDROLASE 3 FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, NEW YORK STRUCTURAL GENOMIX KEYWDS 3 RESEARCH CONSORTIUM, NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,J.FREEMAN,S.CHANG,C.GROSHONG, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 10-FEB-21 3DUP 1 AUTHOR JRNL REMARK LINK REVDAT 4 14-NOV-18 3DUP 1 AUTHOR REVDAT 3 13-JUL-11 3DUP 1 VERSN REVDAT 2 24-FEB-09 3DUP 1 VERSN REVDAT 1 02-SEP-08 3DUP 0 JRNL AUTH Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,J.FREEMAN,S.CHANG, JRNL AUTH 2 C.GROSHONG,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF MUTT/NUDIX FAMILY HYDROLASE FROM JRNL TITL 2 RHODOSPIRILLUM RUBRUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 78018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.69000 REMARK 3 B22 (A**2) : 1.69000 REMARK 3 B33 (A**2) : -2.54000 REMARK 3 B12 (A**2) : 0.85000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4711 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6424 ; 1.402 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 5.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;34.680 ;22.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;14.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;17.029 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 713 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3640 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2279 ; 0.177 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3198 ; 0.304 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1016 ; 0.181 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.158 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 70 ; 0.171 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2961 ; 3.516 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4675 ; 4.477 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 5.722 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 7.882 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2136 ; 0.37 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2136 ; 3.53 ; 3.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82071 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 PH 8, 20% PEG 8000,10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.64500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.29000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.96750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.61250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.32250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 PRO A 284 REMARK 465 ARG A 285 REMARK 465 GLU A 286 REMARK 465 ARG A 287 REMARK 465 ALA A 288 REMARK 465 ALA A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLY A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 ARG B 283 REMARK 465 PRO B 284 REMARK 465 ARG B 285 REMARK 465 GLU B 286 REMARK 465 ARG B 287 REMARK 465 ALA B 288 REMARK 465 ALA B 289 REMARK 465 SER B 290 REMARK 465 GLU B 291 REMARK 465 GLY B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 60.62 -102.71 REMARK 500 ASN A 269 -9.90 -146.00 REMARK 500 HIS B 42 62.48 -109.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11180A RELATED DB: TARGETDB DBREF 3DUP A 2 290 UNP Q2RXX6 Q2RXX6_RHORT 2 290 DBREF 3DUP B 2 290 UNP Q2RXX6 Q2RXX6_RHORT 2 290 SEQADV 3DUP MSE A -1 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP SER A 0 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP LEU A 1 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP GLU A 291 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP GLY A 292 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 293 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 294 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 295 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 296 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 297 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS A 298 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP MSE B -1 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP SER B 0 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP LEU B 1 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP GLU B 291 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP GLY B 292 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 293 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 294 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 295 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 296 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 297 UNP Q2RXX6 EXPRESSION TAG SEQADV 3DUP HIS B 298 UNP Q2RXX6 EXPRESSION TAG SEQRES 1 A 300 MSE SER LEU SER PHE LEU LYS HIS VAL GLN ASP CYS ASN SEQRES 2 A 300 THR HIS ASP LEU SER ASN PHE VAL ARG PHE VAL ILE GLU SEQRES 3 A 300 GLY ARG ARG VAL GLY TRP VAL ARG LYS ALA LEU ALA GLN SEQRES 4 A 300 ARG LEU LYS ALA HIS GLY ARG VAL PHE ASP VAL THR ARG SEQRES 5 A 300 ASP ALA VAL LEU LEU SER ALA SER LEU ARG THR PRO GLN SEQRES 6 A 300 SER ARG THR ARG ALA VAL ALA ASP VAL VAL ASP ARG LEU SEQRES 7 A 300 ALA ASP GLU GLY VAL VAL PRO ALA PRO ARG GLY GLU LEU SEQRES 8 A 300 TYR ARG VAL ASN GLN SER TRP GLY GLU PRO THR LEU MSE SEQRES 9 A 300 LEU LEU ASP ARG ALA VAL VAL PRO THR PHE GLY VAL ARG SEQRES 10 A 300 ALA TYR GLY VAL HIS LEU ASN GLY TYR VAL GLY ALA GLY SEQRES 11 A 300 ALA ASP LEU HIS LEU TRP ILE GLY ARG ARG SER PRO ASP SEQRES 12 A 300 LYS SER VAL ALA PRO GLY LYS LEU ASP ASN MSE VAL ALA SEQRES 13 A 300 GLY GLY GLN PRO ALA ASP LEU SER LEU ARG GLN ASN LEU SEQRES 14 A 300 ILE LYS GLU CYS ALA GLU GLU ALA ASP LEU PRO GLU ALA SEQRES 15 A 300 LEU ALA ARG GLN ALA ILE PRO VAL GLY ALA ILE THR TYR SEQRES 16 A 300 CYS MSE GLU SER PRO ALA GLY ILE LYS PRO ASP THR LEU SEQRES 17 A 300 PHE LEU TYR ASP LEU ALA LEU PRO GLU ASP PHE ARG PRO SEQRES 18 A 300 HIS ASN THR ASP GLY GLU MSE ALA ASP PHE MSE LEU TRP SEQRES 19 A 300 PRO ALA ALA LYS VAL VAL GLU ALA VAL ARG THR THR GLU SEQRES 20 A 300 ALA PHE LYS PHE ASN VAL ASN LEU THR VAL ILE ASP PHE SEQRES 21 A 300 ALA ILE ARG HIS GLY LEU ILE ASP PRO ASP ASN GLU PRO SEQRES 22 A 300 ASP TYR GLN GLU ILE LEU ALA GLY LEU ARG GLY ARG PRO SEQRES 23 A 300 ARG GLU ARG ALA ALA SER GLU GLY HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 300 MSE SER LEU SER PHE LEU LYS HIS VAL GLN ASP CYS ASN SEQRES 2 B 300 THR HIS ASP LEU SER ASN PHE VAL ARG PHE VAL ILE GLU SEQRES 3 B 300 GLY ARG ARG VAL GLY TRP VAL ARG LYS ALA LEU ALA GLN SEQRES 4 B 300 ARG LEU LYS ALA HIS GLY ARG VAL PHE ASP VAL THR ARG SEQRES 5 B 300 ASP ALA VAL LEU LEU SER ALA SER LEU ARG THR PRO GLN SEQRES 6 B 300 SER ARG THR ARG ALA VAL ALA ASP VAL VAL ASP ARG LEU SEQRES 7 B 300 ALA ASP GLU GLY VAL VAL PRO ALA PRO ARG GLY GLU LEU SEQRES 8 B 300 TYR ARG VAL ASN GLN SER TRP GLY GLU PRO THR LEU MSE SEQRES 9 B 300 LEU LEU ASP ARG ALA VAL VAL PRO THR PHE GLY VAL ARG SEQRES 10 B 300 ALA TYR GLY VAL HIS LEU ASN GLY TYR VAL GLY ALA GLY SEQRES 11 B 300 ALA ASP LEU HIS LEU TRP ILE GLY ARG ARG SER PRO ASP SEQRES 12 B 300 LYS SER VAL ALA PRO GLY LYS LEU ASP ASN MSE VAL ALA SEQRES 13 B 300 GLY GLY GLN PRO ALA ASP LEU SER LEU ARG GLN ASN LEU SEQRES 14 B 300 ILE LYS GLU CYS ALA GLU GLU ALA ASP LEU PRO GLU ALA SEQRES 15 B 300 LEU ALA ARG GLN ALA ILE PRO VAL GLY ALA ILE THR TYR SEQRES 16 B 300 CYS MSE GLU SER PRO ALA GLY ILE LYS PRO ASP THR LEU SEQRES 17 B 300 PHE LEU TYR ASP LEU ALA LEU PRO GLU ASP PHE ARG PRO SEQRES 18 B 300 HIS ASN THR ASP GLY GLU MSE ALA ASP PHE MSE LEU TRP SEQRES 19 B 300 PRO ALA ALA LYS VAL VAL GLU ALA VAL ARG THR THR GLU SEQRES 20 B 300 ALA PHE LYS PHE ASN VAL ASN LEU THR VAL ILE ASP PHE SEQRES 21 B 300 ALA ILE ARG HIS GLY LEU ILE ASP PRO ASP ASN GLU PRO SEQRES 22 B 300 ASP TYR GLN GLU ILE LEU ALA GLY LEU ARG GLY ARG PRO SEQRES 23 B 300 ARG GLU ARG ALA ALA SER GLU GLY HIS HIS HIS HIS HIS SEQRES 24 B 300 HIS MODRES 3DUP MSE A 102 MET SELENOMETHIONINE MODRES 3DUP MSE A 152 MET SELENOMETHIONINE MODRES 3DUP MSE A 195 MET SELENOMETHIONINE MODRES 3DUP MSE A 226 MET SELENOMETHIONINE MODRES 3DUP MSE A 230 MET SELENOMETHIONINE MODRES 3DUP MSE B 102 MET SELENOMETHIONINE MODRES 3DUP MSE B 152 MET SELENOMETHIONINE MODRES 3DUP MSE B 195 MET SELENOMETHIONINE MODRES 3DUP MSE B 226 MET SELENOMETHIONINE MODRES 3DUP MSE B 230 MET SELENOMETHIONINE HET MSE A 102 8 HET MSE A 152 8 HET MSE A 195 8 HET MSE A 226 8 HET MSE A 230 13 HET MSE B 102 8 HET MSE B 152 8 HET MSE B 195 8 HET MSE B 226 8 HET MSE B 230 8 HET PO4 A 299 5 HET GOL A 300 6 HET GOL A 301 6 HET GOL A 302 6 HET PO4 B 299 5 HET GOL B 300 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 7(C3 H8 O3) FORMUL 12 HOH *678(H2 O) HELIX 1 1 SER A 2 CYS A 10 1 9 HELIX 2 2 LYS A 33 LYS A 40 1 8 HELIX 3 3 THR A 61 GLU A 79 1 19 HELIX 4 4 ALA A 107 GLY A 113 5 7 HELIX 5 5 ALA A 127 ASP A 130 5 4 HELIX 6 6 SER A 162 ASP A 176 1 15 HELIX 7 7 PRO A 178 ARG A 183 1 6 HELIX 8 8 ALA A 234 THR A 244 1 11 HELIX 9 9 ASN A 250 HIS A 262 1 13 HELIX 10 10 ASP A 272 LEU A 280 1 9 HELIX 11 11 PHE B 3 CYS B 10 1 8 HELIX 12 12 ASP B 14 SER B 16 5 3 HELIX 13 13 LYS B 33 ALA B 41 1 9 HELIX 14 14 THR B 61 GLU B 79 1 19 HELIX 15 15 ALA B 107 GLY B 113 5 7 HELIX 16 16 SER B 162 ASP B 176 1 15 HELIX 17 17 PRO B 178 ARG B 183 1 6 HELIX 18 18 ALA B 234 THR B 244 1 11 HELIX 19 19 ASN B 250 HIS B 262 1 13 HELIX 20 20 ASP B 272 LEU B 280 1 9 SHEET 1 A 4 ARG A 26 ARG A 32 0 SHEET 2 A 4 PHE A 18 ILE A 23 -1 N PHE A 21 O VAL A 28 SHEET 3 A 4 ALA A 52 LEU A 55 1 O VAL A 53 N ARG A 20 SHEET 4 A 4 PHE A 46 VAL A 48 -1 N ASP A 47 O LEU A 54 SHEET 1 B 2 LEU A 89 VAL A 92 0 SHEET 2 B 2 MSE A 102 ASP A 105 -1 O LEU A 104 N TYR A 90 SHEET 1 C 5 LEU A 149 ASN A 151 0 SHEET 2 C 5 HIS A 132 ARG A 138 -1 N GLY A 136 O ASP A 150 SHEET 3 C 5 ALA A 116 VAL A 125 -1 N GLY A 123 O TRP A 134 SHEET 4 C 5 GLY A 200 ALA A 212 1 O TYR A 209 N ASN A 122 SHEET 5 C 5 ILE A 186 SER A 197 -1 N MSE A 195 O LYS A 202 SHEET 1 D 4 VAL A 153 GLY A 156 0 SHEET 2 D 4 ALA A 116 VAL A 125 -1 N LEU A 121 O VAL A 153 SHEET 3 D 4 HIS A 132 ARG A 138 -1 O TRP A 134 N GLY A 123 SHEET 4 D 4 MSE A 226 PRO A 233 -1 O MSE A 230 N ILE A 135 SHEET 1 E 4 ARG B 26 ARG B 32 0 SHEET 2 E 4 PHE B 18 ILE B 23 -1 N VAL B 19 O VAL B 31 SHEET 3 E 4 ALA B 52 LEU B 55 1 O VAL B 53 N ARG B 20 SHEET 4 E 4 PHE B 46 VAL B 48 -1 N ASP B 47 O LEU B 54 SHEET 1 F 2 LEU B 89 VAL B 92 0 SHEET 2 F 2 MSE B 102 ASP B 105 -1 O LEU B 104 N TYR B 90 SHEET 1 G 5 LEU B 149 ASN B 151 0 SHEET 2 G 5 HIS B 132 ARG B 138 -1 N GLY B 136 O ASP B 150 SHEET 3 G 5 ALA B 116 VAL B 125 -1 N GLY B 123 O TRP B 134 SHEET 4 G 5 GLY B 200 ALA B 212 1 O PHE B 207 N GLY B 118 SHEET 5 G 5 ILE B 186 SER B 197 -1 N MSE B 195 O LYS B 202 SHEET 1 H 4 VAL B 153 GLY B 156 0 SHEET 2 H 4 ALA B 116 VAL B 125 -1 N LEU B 121 O VAL B 153 SHEET 3 H 4 HIS B 132 ARG B 138 -1 O TRP B 134 N GLY B 123 SHEET 4 H 4 MSE B 226 PRO B 233 -1 O ALA B 227 N ARG B 137 LINK C LEU A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N LEU A 103 1555 1555 1.32 LINK C ASN A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N VAL A 153 1555 1555 1.34 LINK C CYS A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N GLU A 196 1555 1555 1.33 LINK C GLU A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N ALA A 227 1555 1555 1.33 LINK C PHE A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N LEU A 231 1555 1555 1.33 LINK C LEU B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N LEU B 103 1555 1555 1.33 LINK C ASN B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N VAL B 153 1555 1555 1.34 LINK C CYS B 194 N MSE B 195 1555 1555 1.34 LINK C MSE B 195 N GLU B 196 1555 1555 1.34 LINK C GLU B 225 N MSE B 226 1555 1555 1.33 LINK C MSE B 226 N ALA B 227 1555 1555 1.33 LINK C PHE B 229 N MSE B 230 1555 1555 1.33 LINK C MSE B 230 N LEU B 231 1555 1555 1.32 SITE 1 AC1 8 ARG A 106 ARG A 138 LYS A 142 GOL A 300 SITE 2 AC1 8 GOL A 302 HOH A 351 HOH A 440 HOH A 573 SITE 1 AC2 6 ARG B 106 ARG B 138 LYS B 142 GOL B 303 SITE 2 AC2 6 HOH B 444 HOH B 738 SITE 1 AC3 9 GLY A 118 HIS A 120 LEU A 206 LYS A 248 SITE 2 AC3 9 ASN A 250 PO4 A 299 GOL A 302 HOH A 483 SITE 3 AC3 9 HOH A 573 SITE 1 AC4 9 ALA A 77 GLY A 80 VAL A 82 ALA A 84 SITE 2 AC4 9 HOH A 338 HOH A 400 VAL B 144 ALA B 145 SITE 3 AC4 9 HOH B 425 SITE 1 AC5 8 ARG A 106 VAL A 144 PO4 A 299 GOL A 300 SITE 2 AC5 8 HOH A 324 HOH A 507 HOH A 526 HOH A 609 SITE 1 AC6 6 TYR B 124 GLN B 184 LEU B 211 ALA B 212 SITE 2 AC6 6 HOH B 465 HOH B 622 SITE 1 AC7 7 HOH A 363 HOH A 389 ARG B 164 ARG B 183 SITE 2 AC7 7 GLN B 184 ALA B 185 PRO B 187 SITE 1 AC8 4 PRO B 85 GLY B 87 HOH B 439 HOH B 619 SITE 1 AC9 10 ARG B 106 HIS B 120 ALA B 154 GLY B 155 SITE 2 AC9 10 LEU B 206 LYS B 248 ASN B 250 PO4 B 299 SITE 3 AC9 10 HOH B 459 HOH B 712 CRYST1 115.320 115.320 115.935 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008672 0.005007 0.000000 0.00000 SCALE2 0.000000 0.010013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008626 0.00000