PDB Short entry for 3DXD HEADER PROTEIN BINDING 24-JUL-08 3DXD TITLE CRYSTAL STRUCTURE OF THE INTRACELLULAR DOMAIN OF HUMAN APP (T668E TITLE 2 MUTANT) IN COMPLEX WITH FE65-PTB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN-BINDING FAMILY B MEMBER 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: PTB2 DOMAIN, UNP RESIDUES 534-667; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: APP INTRACELLULAR DOMAIN, UNP RESIDUES 739-770; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBB1, FE65, RIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: APP, A4, AD1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETTRX_1B KEYWDS ALZHEIMER'S DISEASE, APP, AICD, FE65, PTB DOMAIN, ALZHEIMER DISEASE, KEYWDS 2 AMYLOID, APOPTOSIS, CELL ADHESION, COATED PIT, DISEASE MUTATION, KEYWDS 3 ENDOCYTOSIS, GLYCOPROTEIN, HEPARIN-BINDING, IRON, MEMBRANE, METAL- KEYWDS 4 BINDING, NOTCH SIGNALING PATHWAY, PHOSPHOPROTEIN, PROTEASE KEYWDS 5 INHIBITOR, PROTEOGLYCAN, SERINE PROTEASE INHIBITOR, TRANSMEMBRANE, KEYWDS 6 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.RADZIMANOWSKI,I.SINNING,K.WILD REVDAT 6 21-FEB-24 3DXD 1 REMARK REVDAT 5 20-OCT-21 3DXD 1 SEQADV REVDAT 4 01-FEB-17 3DXD 1 JRNL VERSN REVDAT 3 24-FEB-09 3DXD 1 VERSN REVDAT 2 18-NOV-08 3DXD 1 JRNL REVDAT 1 16-SEP-08 3DXD 0 JRNL AUTH J.RADZIMANOWSKI,B.SIMON,M.SATTLER,K.BEYREUTHER,I.SINNING, JRNL AUTH 2 K.WILD JRNL TITL STRUCTURE OF THE INTRACELLULAR DOMAIN OF THE AMYLOID JRNL TITL 2 PRECURSOR PROTEIN IN COMPLEX WITH FE65-PTB2. JRNL REF EMBO REP. V. 9 1134 2008 JRNL REFN ISSN 1469-221X JRNL PMID 18833287 JRNL DOI 10.1038/EMBOR.2008.188 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.RADZIMANOWSKI,K.BEYREUTHER,I.SINNING,K.WILD REMARK 1 TITL OVERPRODUCTION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY ANALYSIS OF HUMAN FE65-PTB2 IN COMPLEX REMARK 1 TITL 3 WITH THE AMYLOID PRECURSOR PROTEIN INTRACELLULAR DOMAIN REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. F64 409 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18453713 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2505 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3405 ; 1.400 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.767 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;17.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1944 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1124 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1703 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 1.270 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2511 ; 1.898 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 2.624 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 894 ; 3.732 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M NACL, 0.1 M SODIUM ACETATE , PH REMARK 280 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.08467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.16933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.62700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.71167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.54233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO COPIES OF A PROTEIN REMARK 300 PROTEIN COMPLEX (ONE BIOMOLECULE 1 BINDS ONE BIOMOLECULE 2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 534 REMARK 465 PRO A 535 REMARK 465 LYS A 536 REMARK 465 HIS A 668 REMARK 465 HIS A 669 REMARK 465 HIS A 670 REMARK 465 HIS A 671 REMARK 465 HIS A 672 REMARK 465 HIS A 673 REMARK 465 GLY B 661 REMARK 465 ALA B 662 REMARK 465 MET B 663 REMARK 465 ASP B 664 REMARK 465 ALA B 665 REMARK 465 ALA B 666 REMARK 465 GLN B 694 REMARK 465 ASN B 695 REMARK 465 ALA C 534 REMARK 465 PRO C 535 REMARK 465 LYS C 536 REMARK 465 ASN C 537 REMARK 465 GLU C 538 REMARK 465 LEU C 539 REMARK 465 VAL C 540 REMARK 465 GLN C 541 REMARK 465 LYS C 542 REMARK 465 SER C 666 REMARK 465 GLN C 667 REMARK 465 HIS C 668 REMARK 465 HIS C 669 REMARK 465 HIS C 670 REMARK 465 HIS C 671 REMARK 465 HIS C 672 REMARK 465 HIS C 673 REMARK 465 GLY D 661 REMARK 465 ALA D 662 REMARK 465 MET D 663 REMARK 465 ASP D 664 REMARK 465 ALA D 665 REMARK 465 ALA D 666 REMARK 465 MET D 693 REMARK 465 GLN D 694 REMARK 465 ASN D 695 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 648 O HOH C 43 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 690 7.51 -60.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 594 GLN A 595 -148.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DXC RELATED DB: PDB REMARK 900 RELATED ID: 3DXE RELATED DB: PDB DBREF 3DXD A 534 667 UNP O00213 APBB1_HUMAN 534 667 DBREF 3DXD B 664 695 UNP P05067 A4_HUMAN 739 770 DBREF 3DXD C 534 667 UNP O00213 APBB1_HUMAN 534 667 DBREF 3DXD D 664 695 UNP P05067 A4_HUMAN 739 770 SEQADV 3DXD HIS A 668 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS A 669 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS A 670 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS A 671 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS A 672 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS A 673 UNP O00213 EXPRESSION TAG SEQADV 3DXD GLY B 661 UNP P05067 EXPRESSION TAG SEQADV 3DXD ALA B 662 UNP P05067 EXPRESSION TAG SEQADV 3DXD MET B 663 UNP P05067 EXPRESSION TAG SEQADV 3DXD GLU B 668 UNP P05067 THR 743 ENGINEERED MUTATION SEQADV 3DXD HIS C 668 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS C 669 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS C 670 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS C 671 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS C 672 UNP O00213 EXPRESSION TAG SEQADV 3DXD HIS C 673 UNP O00213 EXPRESSION TAG SEQADV 3DXD GLY D 661 UNP P05067 EXPRESSION TAG SEQADV 3DXD ALA D 662 UNP P05067 EXPRESSION TAG SEQADV 3DXD MET D 663 UNP P05067 EXPRESSION TAG SEQADV 3DXD GLU D 668 UNP P05067 THR 743 ENGINEERED MUTATION SEQRES 1 A 140 ALA PRO LYS ASN GLU LEU VAL GLN LYS PHE GLN VAL TYR SEQRES 2 A 140 TYR LEU GLY ASN VAL PRO VAL ALA LYS PRO VAL GLY VAL SEQRES 3 A 140 ASP VAL ILE ASN GLY ALA LEU GLU SER VAL LEU SER SER SEQRES 4 A 140 SER SER ARG GLU GLN TRP THR PRO SER HIS VAL SER VAL SEQRES 5 A 140 ALA PRO ALA THR LEU THR ILE LEU HIS GLN GLN THR GLU SEQRES 6 A 140 ALA VAL LEU GLY GLU CYS ARG VAL ARG PHE LEU SER PHE SEQRES 7 A 140 LEU ALA VAL GLY ARG ASP VAL HIS THR PHE ALA PHE ILE SEQRES 8 A 140 MET ALA ALA GLY PRO ALA SER PHE CYS CYS HIS MET PHE SEQRES 9 A 140 TRP CYS GLU PRO ASN ALA ALA SER LEU SER GLU ALA VAL SEQRES 10 A 140 GLN ALA ALA CYS MET LEU ARG TYR GLN LYS CYS LEU ASP SEQRES 11 A 140 ALA ARG SER GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 35 GLY ALA MET ASP ALA ALA VAL GLU PRO GLU GLU ARG HIS SEQRES 2 B 35 LEU SER LYS MET GLN GLN ASN GLY TYR GLU ASN PRO THR SEQRES 3 B 35 TYR LYS PHE PHE GLU GLN MET GLN ASN SEQRES 1 C 140 ALA PRO LYS ASN GLU LEU VAL GLN LYS PHE GLN VAL TYR SEQRES 2 C 140 TYR LEU GLY ASN VAL PRO VAL ALA LYS PRO VAL GLY VAL SEQRES 3 C 140 ASP VAL ILE ASN GLY ALA LEU GLU SER VAL LEU SER SER SEQRES 4 C 140 SER SER ARG GLU GLN TRP THR PRO SER HIS VAL SER VAL SEQRES 5 C 140 ALA PRO ALA THR LEU THR ILE LEU HIS GLN GLN THR GLU SEQRES 6 C 140 ALA VAL LEU GLY GLU CYS ARG VAL ARG PHE LEU SER PHE SEQRES 7 C 140 LEU ALA VAL GLY ARG ASP VAL HIS THR PHE ALA PHE ILE SEQRES 8 C 140 MET ALA ALA GLY PRO ALA SER PHE CYS CYS HIS MET PHE SEQRES 9 C 140 TRP CYS GLU PRO ASN ALA ALA SER LEU SER GLU ALA VAL SEQRES 10 C 140 GLN ALA ALA CYS MET LEU ARG TYR GLN LYS CYS LEU ASP SEQRES 11 C 140 ALA ARG SER GLN HIS HIS HIS HIS HIS HIS SEQRES 1 D 35 GLY ALA MET ASP ALA ALA VAL GLU PRO GLU GLU ARG HIS SEQRES 2 D 35 LEU SER LYS MET GLN GLN ASN GLY TYR GLU ASN PRO THR SEQRES 3 D 35 TYR LYS PHE PHE GLU GLN MET GLN ASN FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLY A 558 SER A 572 1 15 HELIX 2 2 ALA A 643 SER A 666 1 24 HELIX 3 3 GLU B 668 ASN B 680 1 13 HELIX 4 4 ASN B 684 GLN B 692 1 9 HELIX 5 5 GLY C 558 SER C 572 1 15 HELIX 6 6 SER C 574 TRP C 578 5 5 HELIX 7 7 ALA C 643 ALA C 664 1 22 HELIX 8 8 GLU D 668 ASN D 680 1 13 HELIX 9 9 ASN D 684 PHE D 690 1 7 SHEET 1 A 8 VAL A 600 ARG A 605 0 SHEET 2 A 8 THR A 589 HIS A 594 -1 N ILE A 592 O GLY A 602 SHEET 3 A 8 THR A 579 VAL A 585 -1 N SER A 584 O THR A 591 SHEET 4 A 8 PHE A 543 VAL A 553 -1 N VAL A 545 O SER A 581 SHEET 5 A 8 SER A 631 TRP A 638 -1 O CYS A 634 N VAL A 551 SHEET 6 A 8 THR A 620 GLY A 628 -1 N MET A 625 O CYS A 633 SHEET 7 A 8 LEU A 609 VAL A 614 -1 N PHE A 611 O ILE A 624 SHEET 8 A 8 TYR B 682 GLU B 683 -1 O TYR B 682 N LEU A 612 SHEET 1 B 8 VAL C 600 ARG C 605 0 SHEET 2 B 8 THR C 589 HIS C 594 -1 N ILE C 592 O LEU C 601 SHEET 3 B 8 THR C 579 VAL C 585 -1 N SER C 584 O THR C 591 SHEET 4 B 8 GLN C 544 VAL C 553 -1 N TYR C 547 O THR C 579 SHEET 5 B 8 SER C 631 GLU C 640 -1 O CYS C 634 N VAL C 551 SHEET 6 B 8 THR C 620 GLY C 628 -1 N MET C 625 O CYS C 633 SHEET 7 B 8 LEU C 609 VAL C 614 -1 N PHE C 611 O ILE C 624 SHEET 8 B 8 TYR D 682 GLU D 683 -1 O TYR D 682 N LEU C 612 CISPEP 1 GLU A 640 PRO A 641 0 9.16 CISPEP 2 GLU C 640 PRO C 641 0 -3.35 CRYST1 115.115 115.115 75.254 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008687 0.005015 0.000000 0.00000 SCALE2 0.000000 0.010031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013288 0.00000