PDB Short entry for 3DZQ HEADER TRANSFERASE 30-JUL-08 3DZQ TITLE HUMAN EPHA3 KINASE DOMAIN IN COMPLEX WITH INHIBITOR AWL-II-38.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPH RECEPTOR A3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN: RESIDUES 606-947; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 TISSUE: PLACENTA; SOURCE 5 GENE: EPHA3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28-LIC-THROMBIN KEYWDS RECEPTOR TYROSINE KINASE, STRUCTURAL GENOMICS CONSORTIUM, SGC, ATP- KEYWDS 2 BINDING, MEMBRANE, NUCLEOTIDE BINDING, PHOSPHORYLATION, TRANSFERASE, KEYWDS 3 TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, INHIBITOR-COMPLEX, KEYWDS 4 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,F.SYEDA,N.GRAY,W.MANSOOR,F.MACKENZIE,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 30-AUG-23 3DZQ 1 REMARK SEQADV REVDAT 3 25-OCT-17 3DZQ 1 REMARK REVDAT 2 24-FEB-09 3DZQ 1 VERSN REVDAT 1 26-AUG-08 3DZQ 0 JRNL AUTH J.R.WALKER,F.SYEDA,N.GRAY,W.MANSOOR,F.MACKENZIE,C.BOUNTRA, JRNL AUTH 2 J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, JRNL AUTH 3 S.DHE-PAGANON JRNL TITL KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 3 (EPHA3) IN JRNL TITL 2 COMPLEX WITH ALW-II-38-3. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 28770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2244 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3036 ; 1.586 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;30.531 ;23.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;12.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1673 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1115 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1559 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1405 ; 1.066 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2194 ; 1.470 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 983 ; 2.576 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 842 ; 3.680 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 609 A 614 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8853 24.1283 45.2993 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: -0.0362 REMARK 3 T33: 0.2999 T12: 0.0351 REMARK 3 T13: -0.0193 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 20.6303 L22: 32.7330 REMARK 3 L33: 10.4549 L12: 22.8285 REMARK 3 L13: 6.4538 L23: 4.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.1712 S12: 0.2052 S13: 2.2826 REMARK 3 S21: 0.1464 S22: -0.1791 S23: 0.6188 REMARK 3 S31: -0.7520 S32: -0.3513 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 615 A 633 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7789 6.4145 47.7211 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: 0.0733 REMARK 3 T33: 0.0632 T12: -0.0240 REMARK 3 T13: 0.0318 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 3.3893 L22: 3.2985 REMARK 3 L33: 3.4882 L12: 0.1084 REMARK 3 L13: 1.0686 L23: 2.9611 REMARK 3 S TENSOR REMARK 3 S11: 0.1567 S12: -0.3113 S13: -0.3823 REMARK 3 S21: 0.2511 S22: -0.0387 S23: 0.2108 REMARK 3 S31: 0.5981 S32: -0.2258 S33: -0.1181 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 634 A 652 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2823 7.7188 39.9524 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.0648 REMARK 3 T33: 0.1048 T12: -0.0128 REMARK 3 T13: -0.0048 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.2183 L22: 2.1397 REMARK 3 L33: 11.5027 L12: -0.7451 REMARK 3 L13: 3.2116 L23: -1.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.1494 S13: -0.0666 REMARK 3 S21: -0.0211 S22: 0.0656 S23: 0.1856 REMARK 3 S31: 0.2345 S32: -0.1663 S33: -0.1499 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 653 A 677 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3645 18.4913 56.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.1504 REMARK 3 T33: 0.0500 T12: -0.0446 REMARK 3 T13: 0.0175 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 12.0761 L22: 3.3653 REMARK 3 L33: 2.6742 L12: 5.8451 REMARK 3 L13: -5.2316 L23: -2.8015 REMARK 3 S TENSOR REMARK 3 S11: 0.4493 S12: -1.0565 S13: 0.6424 REMARK 3 S21: 0.2391 S22: -0.3609 S23: 0.2895 REMARK 3 S31: -0.2744 S32: 0.2212 S33: -0.0884 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 678 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3408 14.5485 46.3588 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0746 REMARK 3 T33: 0.1001 T12: 0.0093 REMARK 3 T13: -0.0056 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.3142 L22: 0.9785 REMARK 3 L33: 0.9003 L12: 0.3126 REMARK 3 L13: -0.1618 L23: -0.2036 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0983 S13: 0.0685 REMARK 3 S21: -0.0384 S22: 0.0053 S23: 0.1850 REMARK 3 S31: -0.0627 S32: -0.1325 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 702 A 756 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7176 8.4303 51.0831 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.0725 REMARK 3 T33: 0.0760 T12: -0.0028 REMARK 3 T13: -0.0051 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5356 L22: 1.7002 REMARK 3 L33: 0.5179 L12: -0.0141 REMARK 3 L13: 0.1981 L23: -0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0018 S13: -0.0189 REMARK 3 S21: 0.0024 S22: -0.0085 S23: 0.0494 REMARK 3 S31: 0.0166 S32: 0.0179 S33: -0.0106 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 757 A 767 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0368 9.7858 51.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.0991 REMARK 3 T33: 0.0869 T12: -0.0027 REMARK 3 T13: -0.0074 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.1604 L22: 5.3520 REMARK 3 L33: 1.7072 L12: 0.2339 REMARK 3 L13: -0.4686 L23: 0.8131 REMARK 3 S TENSOR REMARK 3 S11: 0.1527 S12: -0.2117 S13: 0.0614 REMARK 3 S21: 0.1754 S22: -0.0511 S23: 0.1731 REMARK 3 S31: -0.0594 S32: -0.1335 S33: -0.1016 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 787 A 834 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6139 12.0036 65.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.1015 REMARK 3 T33: 0.0573 T12: -0.0065 REMARK 3 T13: 0.0011 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.7262 L22: 1.0137 REMARK 3 L33: 0.8823 L12: -0.4279 REMARK 3 L13: 0.2897 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.1626 S13: -0.0364 REMARK 3 S21: 0.1756 S22: -0.0137 S23: 0.0340 REMARK 3 S31: -0.0089 S32: -0.1019 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 835 A 882 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9345 13.9521 58.6476 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.1007 REMARK 3 T33: 0.0998 T12: -0.0237 REMARK 3 T13: -0.0076 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.2834 L22: 1.2830 REMARK 3 L33: 2.2515 L12: -0.0083 REMARK 3 L13: -0.0263 L23: -0.3621 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0014 S13: 0.0442 REMARK 3 S21: 0.0977 S22: -0.0721 S23: -0.1323 REMARK 3 S31: -0.0652 S32: 0.1716 S33: 0.0515 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 883 A 904 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4604 5.7274 54.8256 REMARK 3 T TENSOR REMARK 3 T11: -0.0412 T22: 0.0533 REMARK 3 T33: 0.0482 T12: 0.0084 REMARK 3 T13: 0.0293 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 4.3311 L22: 1.3943 REMARK 3 L33: 22.0990 L12: -0.4216 REMARK 3 L13: -6.5832 L23: 0.5630 REMARK 3 S TENSOR REMARK 3 S11: -0.2095 S12: 0.2403 S13: -0.3387 REMARK 3 S21: -0.1824 S22: -0.1578 S23: -0.3019 REMARK 3 S31: 0.5040 S32: 0.5213 S33: 0.3674 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 3DZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.9390 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 16.65 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GSF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML PROTEIN, 30% PEG 4000, 0.2M REMARK 280 AMMONIUM SULFATE, 0.1M SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.04650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 587 REMARK 465 GLY A 588 REMARK 465 SER A 589 REMARK 465 SER A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 SER A 597 REMARK 465 SER A 598 REMARK 465 GLY A 599 REMARK 465 LEU A 600 REMARK 465 VAL A 601 REMARK 465 PRO A 602 REMARK 465 ARG A 603 REMARK 465 GLY A 604 REMARK 465 SER A 605 REMARK 465 THR A 606 REMARK 465 GLN A 607 REMARK 465 THR A 608 REMARK 465 SER A 768 REMARK 465 ARG A 769 REMARK 465 VAL A 770 REMARK 465 LEU A 771 REMARK 465 GLU A 772 REMARK 465 ASP A 773 REMARK 465 ASP A 774 REMARK 465 PRO A 775 REMARK 465 GLU A 776 REMARK 465 ALA A 777 REMARK 465 ALA A 778 REMARK 465 TYR A 779 REMARK 465 THR A 780 REMARK 465 THR A 781 REMARK 465 ARG A 782 REMARK 465 GLY A 783 REMARK 465 GLY A 784 REMARK 465 LYS A 785 REMARK 465 ILE A 786 REMARK 465 GLY A 886 REMARK 465 SER A 887 REMARK 465 SER A 893 REMARK 465 ALA A 894 REMARK 465 ALA A 895 REMARK 465 ALA A 896 REMARK 465 ARG A 897 REMARK 465 PRO A 898 REMARK 465 SER A 899 REMARK 465 GLN A 905 REMARK 465 SER A 906 REMARK 465 ASN A 907 REMARK 465 VAL A 908 REMARK 465 ASP A 909 REMARK 465 ILE A 910 REMARK 465 THR A 911 REMARK 465 THR A 912 REMARK 465 PHE A 913 REMARK 465 ARG A 914 REMARK 465 THR A 915 REMARK 465 THR A 916 REMARK 465 GLY A 917 REMARK 465 ASP A 918 REMARK 465 TRP A 919 REMARK 465 LEU A 920 REMARK 465 ASN A 921 REMARK 465 GLY A 922 REMARK 465 VAL A 923 REMARK 465 TRP A 924 REMARK 465 THR A 925 REMARK 465 ALA A 926 REMARK 465 HIS A 927 REMARK 465 CYS A 928 REMARK 465 LYS A 929 REMARK 465 GLU A 930 REMARK 465 ILE A 931 REMARK 465 PHE A 932 REMARK 465 THR A 933 REMARK 465 GLY A 934 REMARK 465 VAL A 935 REMARK 465 GLU A 936 REMARK 465 TYR A 937 REMARK 465 SER A 938 REMARK 465 SER A 939 REMARK 465 CYS A 940 REMARK 465 ASP A 941 REMARK 465 THR A 942 REMARK 465 ILE A 943 REMARK 465 ALA A 944 REMARK 465 LYS A 945 REMARK 465 ILE A 946 REMARK 465 SER A 947 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 883 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 884 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 763 O1C IFC A 1001 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 624 -70.46 -96.10 REMARK 500 LYS A 645 -7.63 81.42 REMARK 500 ARG A 745 -13.10 78.08 REMARK 500 ASP A 746 44.41 -140.43 REMARK 500 SER A 763 -168.19 -129.57 REMARK 500 ASP A 764 114.41 -165.15 REMARK 500 ASP A 764 114.41 -161.04 REMARK 500 TYR A 798 30.95 -153.58 REMARK 500 TYR A 825 17.20 59.67 REMARK 500 TRP A 826 -129.80 49.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IFC A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSF RELATED DB: PDB REMARK 900 HUMAN EPHA3 RECEPTOR TYROSINE KINASE AND JUXTAMEMBRANE REGION REMARK 900 RELATED ID: 2QO2 RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, DEPHOSPHORYLATED, APO REMARK 900 STRUCTURE REMARK 900 RELATED ID: 2QO7 RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, DEPHOSPHORYLATED, AMP- REMARK 900 PNP BOUND REMARK 900 RELATED ID: 2QO9 RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, PHOSPHORYLATED, AMP- REMARK 900 PNP BOUND REMARK 900 RELATED ID: 2QOC RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE DOMAIN, PHOSPHORYLATED, AMP-PNP BOUND REMARK 900 RELATED ID: 2QOD RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y602F MUTANT REMARK 900 RELATED ID: 2QOF RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596F MUTANT REMARK 900 RELATED ID: 2QOI RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596F:Y602F DOUBLE REMARK 900 MUTANT REMARK 900 RELATED ID: 2QOK RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596F:Y602F:S768A REMARK 900 TRIPLE MUTANT REMARK 900 RELATED ID: 2QOL RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596:Y602:S768G TRIPLE REMARK 900 MUTANT REMARK 900 RELATED ID: 2QON RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596F:Y602F:Y742A REMARK 900 TRIPLE MUTANT REMARK 900 RELATED ID: 2QOO RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, Y596F:Y602F:Y742F REMARK 900 TRIPLE MUTANT REMARK 900 RELATED ID: 2QOQ RELATED DB: PDB REMARK 900 HUMAN EPHA3 KINASE AND JUXTAMEMBRANE REGION, BASE, AMP-PNP BOUND DBREF 3DZQ A 606 947 UNP Q6P4R6 Q6P4R6_HUMAN 606 947 SEQADV 3DZQ MET A 587 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ GLY A 588 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ SER A 589 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ SER A 590 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 591 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 592 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 593 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 594 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 595 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ HIS A 596 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ SER A 597 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ SER A 598 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ GLY A 599 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ LEU A 600 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ VAL A 601 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ PRO A 602 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ ARG A 603 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ GLY A 604 UNP Q6P4R6 EXPRESSION TAG SEQADV 3DZQ SER A 605 UNP Q6P4R6 EXPRESSION TAG SEQRES 1 A 361 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 361 LEU VAL PRO ARG GLY SER THR GLN THR VAL HIS GLU PHE SEQRES 3 A 361 ALA LYS GLU LEU ASP ALA THR ASN ILE SER ILE ASP LYS SEQRES 4 A 361 VAL VAL GLY ALA GLY GLU PHE GLY GLU VAL CYS SER GLY SEQRES 5 A 361 ARG LEU LYS LEU PRO SER LYS LYS GLU ILE SER VAL ALA SEQRES 6 A 361 ILE LYS THR LEU LYS VAL GLY TYR THR GLU LYS GLN ARG SEQRES 7 A 361 ARG ASP PHE LEU GLY GLU ALA SER ILE MET GLY GLN PHE SEQRES 8 A 361 ASP HIS PRO ASN ILE ILE ARG LEU GLU GLY VAL VAL THR SEQRES 9 A 361 LYS SER LYS PRO VAL MET ILE VAL THR GLU TYR MET GLU SEQRES 10 A 361 ASN GLY SER LEU ASP SER PHE LEU ARG LYS HIS ASP ALA SEQRES 11 A 361 GLN PHE THR VAL ILE GLN LEU VAL GLY MET LEU ARG GLY SEQRES 12 A 361 ILE ALA SER GLY MET LYS TYR LEU SER ASP MET GLY TYR SEQRES 13 A 361 VAL HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU ILE ASN SEQRES 14 A 361 SER ASN LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER SEQRES 15 A 361 ARG VAL LEU GLU ASP ASP PRO GLU ALA ALA TYR THR THR SEQRES 16 A 361 ARG GLY GLY LYS ILE PRO ILE ARG TRP THR SER PRO GLU SEQRES 17 A 361 ALA ILE ALA TYR ARG LYS PHE THR SER ALA SER ASP VAL SEQRES 18 A 361 TRP SER TYR GLY ILE VAL LEU TRP GLU VAL MET SER TYR SEQRES 19 A 361 GLY GLU ARG PRO TYR TRP GLU MET SER ASN GLN ASP VAL SEQRES 20 A 361 ILE LYS ALA VAL ASP GLU GLY TYR ARG LEU PRO PRO PRO SEQRES 21 A 361 MET ASP CYS PRO ALA ALA LEU TYR GLN LEU MET LEU ASP SEQRES 22 A 361 CYS TRP GLN LYS ASP ARG ASN ASN ARG PRO LYS PHE GLU SEQRES 23 A 361 GLN ILE VAL SER ILE LEU ASP LYS LEU ILE ARG ASN PRO SEQRES 24 A 361 GLY SER LEU LYS ILE ILE THR SER ALA ALA ALA ARG PRO SEQRES 25 A 361 SER ASN LEU LEU LEU ASP GLN SER ASN VAL ASP ILE THR SEQRES 26 A 361 THR PHE ARG THR THR GLY ASP TRP LEU ASN GLY VAL TRP SEQRES 27 A 361 THR ALA HIS CYS LYS GLU ILE PHE THR GLY VAL GLU TYR SEQRES 28 A 361 SER SER CYS ASP THR ILE ALA LYS ILE SER HET IFC A1001 34 HETNAM IFC N-[2-METHYL-5-({[3-(4-METHYL-1H-IMIDAZOL-1-YL)-5- HETNAM 2 IFC (TRIFLUOROMETHYL)PHENYL]CARBONYL}AMINO) HETNAM 3 IFC PHENYL]ISOXAZOLE-5-CARBOXAMIDE HETSYN IFC N-(2-METHYL-5-(3-(4-METHYL-1H-IMIDAZOL-1-YL)-5- HETSYN 2 IFC (TRIFLUOROMETHYL)BENZAMIDO)PHENYL)ISOXAZOLE-5- HETSYN 3 IFC CARBOXAMIDE FORMUL 2 IFC C23 H18 F3 N5 O3 FORMUL 3 HOH *286(H2 O) HELIX 1 1 ASP A 617 THR A 619 5 3 HELIX 2 2 GLY A 628 GLU A 631 5 4 HELIX 3 3 THR A 660 GLY A 675 1 16 HELIX 4 4 SER A 706 LYS A 713 1 8 HELIX 5 5 THR A 719 MET A 740 1 22 HELIX 6 6 ALA A 748 ARG A 750 5 3 HELIX 7 7 PRO A 787 THR A 791 5 5 HELIX 8 8 SER A 792 ARG A 799 1 8 HELIX 9 9 THR A 802 SER A 819 1 18 HELIX 10 10 SER A 829 GLU A 839 1 11 HELIX 11 11 PRO A 850 TRP A 861 1 12 HELIX 12 12 ASP A 864 ARG A 868 5 5 HELIX 13 13 LYS A 870 ARG A 883 1 14 SHEET 1 A 5 ILE A 621 VAL A 626 0 SHEET 2 A 5 VAL A 635 LYS A 641 -1 O SER A 637 N ASP A 624 SHEET 3 A 5 GLU A 647 THR A 654 -1 O ILE A 652 N CYS A 636 SHEET 4 A 5 MET A 696 GLU A 700 -1 O ILE A 697 N LYS A 653 SHEET 5 A 5 LEU A 685 VAL A 689 -1 N GLY A 687 O VAL A 698 SHEET 1 B 2 ILE A 752 ILE A 754 0 SHEET 2 B 2 CYS A 760 VAL A 762 -1 O LYS A 761 N LEU A 753 SHEET 1 C 2 TYR A 841 ARG A 842 0 SHEET 2 C 2 LEU A 902 LEU A 903 -1 O LEU A 902 N ARG A 842 CISPEP 1 LYS A 693 PRO A 694 0 -0.28 SITE 1 AC1 19 PHE A 632 ALA A 651 GLU A 670 ILE A 673 SITE 2 AC1 19 MET A 674 PHE A 677 ILE A 682 ILE A 683 SITE 3 AC1 19 ILE A 697 THR A 699 GLU A 700 MET A 702 SITE 4 AC1 19 TYR A 742 HIS A 744 LEU A 753 SER A 763 SITE 5 AC1 19 ASP A 764 PHE A 765 HOH A1237 CRYST1 53.400 38.093 75.983 90.00 101.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018727 0.000000 0.003894 0.00000 SCALE2 0.000000 0.026252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013442 0.00000