PDB Short entry for 3E0Z HEADER UNKNOWN FUNCTION 01-AUG-08 3E0Z TITLE CRYSTAL STRUCTURE OF A PUTATIVE IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE TITLE 2 HOMOLOG (EUBREC_1070) FROM EUBACTERIUM RECTALE AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 GENE: RER070207001348; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 3E0Z 1 REMARK DBREF LINK REVDAT 5 25-OCT-17 3E0Z 1 REMARK REVDAT 4 13-JUL-11 3E0Z 1 VERSN REVDAT 3 23-MAR-11 3E0Z 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3E0Z 1 VERSN REVDAT 1 12-AUG-08 3E0Z 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (RER070207001348) FROM EUBACTERIUM RECTALE AT 1.75 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 36334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 13.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3661 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2406 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4967 ; 1.817 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5959 ; 1.610 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 2.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;35.228 ;26.092 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ; 8.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4088 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 656 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 794 ; 0.179 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2620 ; 0.114 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1797 ; 0.158 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1692 ; 0.082 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 521 ; 0.161 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.085 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.144 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 76 ; 0.171 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2367 ; 1.620 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 895 ; 0.578 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3633 ; 2.088 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 3.971 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1334 ; 5.404 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 105 4 REMARK 3 1 B 3 B 105 4 REMARK 3 1 C 3 C 105 4 REMARK 3 1 D 3 D 105 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1240 ; 0.480 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1240 ; 0.380 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1240 ; 0.440 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1240 ; 0.530 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1240 ; 0.860 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1240 ; 1.070 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1240 ; 0.990 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1240 ; 0.900 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0885 10.3484 20.1261 REMARK 3 T TENSOR REMARK 3 T11: -0.0134 T22: -0.0129 REMARK 3 T33: -0.0132 T12: -0.0043 REMARK 3 T13: 0.0055 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.4083 L22: 0.7751 REMARK 3 L33: 0.3495 L12: -0.0607 REMARK 3 L13: -0.0656 L23: 0.0840 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0164 S13: -0.0150 REMARK 3 S21: -0.0713 S22: -0.0076 S23: -0.0205 REMARK 3 S31: 0.0082 S32: 0.0060 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5883 10.7514 20.2696 REMARK 3 T TENSOR REMARK 3 T11: -0.0076 T22: -0.0207 REMARK 3 T33: -0.0102 T12: 0.0069 REMARK 3 T13: 0.0055 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.5314 L22: 0.8779 REMARK 3 L33: 0.4738 L12: 0.3412 REMARK 3 L13: -0.2864 L23: 0.1696 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.0030 S13: 0.0211 REMARK 3 S21: -0.0669 S22: -0.0484 S23: 0.0174 REMARK 3 S31: -0.0796 S32: -0.0482 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 107 REMARK 3 ORIGIN FOR THE GROUP (A): 21.1968 11.1709 -8.7057 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: -0.0069 REMARK 3 T33: -0.0191 T12: -0.0007 REMARK 3 T13: 0.0008 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0145 L22: 0.3175 REMARK 3 L33: 0.9099 L12: 0.0315 REMARK 3 L13: -0.1292 L23: -0.3817 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.0394 S13: -0.0350 REMARK 3 S21: 0.0165 S22: -0.0204 S23: 0.0092 REMARK 3 S31: -0.0066 S32: 0.1027 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 107 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7983 11.4711 -9.0249 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: -0.0026 REMARK 3 T33: -0.0114 T12: -0.0078 REMARK 3 T13: -0.0080 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.5283 L22: 0.3869 REMARK 3 L33: 0.5769 L12: -0.1684 REMARK 3 L13: 0.0174 L23: -0.3032 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0229 S13: -0.0325 REMARK 3 S21: 0.0049 S22: 0.0151 S23: -0.0024 REMARK 3 S31: 0.0036 S32: 0.0301 S33: -0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4.PEG MOLECULES FROM CRYOPROTECTION CONDITIOIN ARE MODELED REMARK 3 INTO THIS STRUCTURE. REMARK 4 REMARK 4 3E0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-08; 23-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895; 0.97872, 0.97931, REMARK 200 0.91837 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; SI 111 CHANNEL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.13600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-6000, 0.1M MES PH 6.0, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 107 REMARK 465 THR A 108 REMARK 465 GLY B 0 REMARK 465 THR C 108 REMARK 465 THR D 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 80 OE1 OE2 REMARK 470 MSE B 1 CG SE CE REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 LYS B 57 CE NZ REMARK 470 GLU B 80 OE1 OE2 REMARK 470 MSE C 1 CG SE CE REMARK 470 LYS C 49 CD CE NZ REMARK 470 ASP C 60 CG OD1 OD2 REMARK 470 LYS C 61 CD CE NZ REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 LYS D 18 CD CE NZ REMARK 470 LYS D 49 CD CE NZ REMARK 470 LYS D 57 NZ REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 SER D 106 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 7 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 7 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG C 16 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG D 16 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -171.21 68.51 REMARK 500 HIS A 85 65.18 -151.41 REMARK 500 SER B 19 -171.54 67.99 REMARK 500 HIS B 85 69.93 -156.22 REMARK 500 SER C 19 -175.80 72.14 REMARK 500 HIS C 85 57.41 -147.96 REMARK 500 SER D 19 -172.92 71.53 REMARK 500 ASP D 82 -168.50 -100.98 REMARK 500 HIS D 85 55.30 -150.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388609 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3E0Z A 0 108 PDB 3E0Z 3E0Z 0 108 DBREF 3E0Z B 0 108 PDB 3E0Z 3E0Z 0 108 DBREF 3E0Z C 0 108 PDB 3E0Z 3E0Z 0 108 DBREF 3E0Z D 0 108 PDB 3E0Z 3E0Z 0 108 SEQRES 1 A 109 GLY MSE ILE THR SER ILE ALA ARG GLN SER ILE ILE LEU SEQRES 2 A 109 LYS CYS LEU ARG GLN LYS SER VAL LEU VAL SER ASN TYR SEQRES 3 A 109 GLU LEU TYR TYR THR ALA GLY LEU ALA LYS LYS CYS PHE SEQRES 4 A 109 GLY ILE ALA VAL ASP ALA ASP MSE GLU PRO LYS GLN LEU SEQRES 5 A 109 LEU GLU GLU LEU GLN LYS HIS ILE ASP LYS VAL SER PRO SEQRES 6 A 109 ALA ASP GLU GLN GLU LYS TYR LEU ILE HIS LEU LEU GLY SEQRES 7 A 109 ASN TYR GLU PRO ASP ASP THR HIS ASP GLU GLN THR VAL SEQRES 8 A 109 GLU LEU PHE HIS MSE GLY GLU THR GLU GLU HIS ILE TRP SEQRES 9 A 109 GLN VAL SER ILE THR SEQRES 1 B 109 GLY MSE ILE THR SER ILE ALA ARG GLN SER ILE ILE LEU SEQRES 2 B 109 LYS CYS LEU ARG GLN LYS SER VAL LEU VAL SER ASN TYR SEQRES 3 B 109 GLU LEU TYR TYR THR ALA GLY LEU ALA LYS LYS CYS PHE SEQRES 4 B 109 GLY ILE ALA VAL ASP ALA ASP MSE GLU PRO LYS GLN LEU SEQRES 5 B 109 LEU GLU GLU LEU GLN LYS HIS ILE ASP LYS VAL SER PRO SEQRES 6 B 109 ALA ASP GLU GLN GLU LYS TYR LEU ILE HIS LEU LEU GLY SEQRES 7 B 109 ASN TYR GLU PRO ASP ASP THR HIS ASP GLU GLN THR VAL SEQRES 8 B 109 GLU LEU PHE HIS MSE GLY GLU THR GLU GLU HIS ILE TRP SEQRES 9 B 109 GLN VAL SER ILE THR SEQRES 1 C 109 GLY MSE ILE THR SER ILE ALA ARG GLN SER ILE ILE LEU SEQRES 2 C 109 LYS CYS LEU ARG GLN LYS SER VAL LEU VAL SER ASN TYR SEQRES 3 C 109 GLU LEU TYR TYR THR ALA GLY LEU ALA LYS LYS CYS PHE SEQRES 4 C 109 GLY ILE ALA VAL ASP ALA ASP MSE GLU PRO LYS GLN LEU SEQRES 5 C 109 LEU GLU GLU LEU GLN LYS HIS ILE ASP LYS VAL SER PRO SEQRES 6 C 109 ALA ASP GLU GLN GLU LYS TYR LEU ILE HIS LEU LEU GLY SEQRES 7 C 109 ASN TYR GLU PRO ASP ASP THR HIS ASP GLU GLN THR VAL SEQRES 8 C 109 GLU LEU PHE HIS MSE GLY GLU THR GLU GLU HIS ILE TRP SEQRES 9 C 109 GLN VAL SER ILE THR SEQRES 1 D 109 GLY MSE ILE THR SER ILE ALA ARG GLN SER ILE ILE LEU SEQRES 2 D 109 LYS CYS LEU ARG GLN LYS SER VAL LEU VAL SER ASN TYR SEQRES 3 D 109 GLU LEU TYR TYR THR ALA GLY LEU ALA LYS LYS CYS PHE SEQRES 4 D 109 GLY ILE ALA VAL ASP ALA ASP MSE GLU PRO LYS GLN LEU SEQRES 5 D 109 LEU GLU GLU LEU GLN LYS HIS ILE ASP LYS VAL SER PRO SEQRES 6 D 109 ALA ASP GLU GLN GLU LYS TYR LEU ILE HIS LEU LEU GLY SEQRES 7 D 109 ASN TYR GLU PRO ASP ASP THR HIS ASP GLU GLN THR VAL SEQRES 8 D 109 GLU LEU PHE HIS MSE GLY GLU THR GLU GLU HIS ILE TRP SEQRES 9 D 109 GLN VAL SER ILE THR MODRES 3E0Z MSE A 1 MET SELENOMETHIONINE MODRES 3E0Z MSE A 46 MET SELENOMETHIONINE MODRES 3E0Z MSE A 95 MET SELENOMETHIONINE MODRES 3E0Z MSE B 1 MET SELENOMETHIONINE MODRES 3E0Z MSE B 46 MET SELENOMETHIONINE MODRES 3E0Z MSE B 95 MET SELENOMETHIONINE MODRES 3E0Z MSE C 1 MET SELENOMETHIONINE MODRES 3E0Z MSE C 46 MET SELENOMETHIONINE MODRES 3E0Z MSE C 95 MET SELENOMETHIONINE MODRES 3E0Z MSE D 1 MET SELENOMETHIONINE MODRES 3E0Z MSE D 46 MET SELENOMETHIONINE MODRES 3E0Z MSE D 95 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 46 8 HET MSE A 95 8 HET MSE B 1 5 HET MSE B 46 8 HET MSE B 95 8 HET MSE C 1 5 HET MSE C 46 8 HET MSE C 95 8 HET MSE D 1 8 HET MSE D 46 8 HET MSE D 95 8 HET PEG A 109 7 HET PEG A 110 7 HET PEG B 109 7 HET PG4 C 109 13 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 HOH *394(H2 O) HELIX 1 1 MSE A 1 GLN A 17 1 17 HELIX 2 2 SER A 23 GLY A 39 1 17 HELIX 3 3 GLU A 47 LYS A 57 1 11 HELIX 4 4 HIS A 58 VAL A 62 5 5 HELIX 5 5 ASP A 66 ASN A 78 1 13 HELIX 6 6 ASP A 86 THR A 98 1 13 HELIX 7 7 MSE B 1 GLN B 17 1 17 HELIX 8 8 SER B 23 GLY B 39 1 17 HELIX 9 9 GLU B 47 ILE B 59 1 13 HELIX 10 10 ASP B 66 ASN B 78 1 13 HELIX 11 11 ASP B 86 THR B 98 1 13 HELIX 12 12 GLY C 0 GLN C 17 1 18 HELIX 13 13 SER C 23 GLY C 39 1 17 HELIX 14 14 GLU C 47 ILE C 59 1 13 HELIX 15 15 ASP C 60 VAL C 62 5 3 HELIX 16 16 ASP C 66 LEU C 76 1 11 HELIX 17 17 ASP C 86 THR C 98 1 13 HELIX 18 18 ILE D 2 GLN D 17 1 16 HELIX 19 19 SER D 23 GLY D 39 1 17 HELIX 20 20 GLU D 47 ILE D 59 1 13 HELIX 21 21 ASP D 66 GLY D 77 1 12 HELIX 22 22 ASP D 86 GLU D 99 1 14 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ILE A 2 1555 1555 1.34 LINK C ASP A 45 N MSE A 46 1555 1555 1.34 LINK C MSE A 46 N GLU A 47 1555 1555 1.33 LINK C HIS A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N GLY A 96 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C ASP B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N GLU B 47 1555 1555 1.33 LINK C HIS B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N GLY B 96 1555 1555 1.34 LINK C GLY C 0 N MSE C 1 1555 1555 1.35 LINK C MSE C 1 N ILE C 2 1555 1555 1.34 LINK C ASP C 45 N MSE C 46 1555 1555 1.34 LINK C MSE C 46 N GLU C 47 1555 1555 1.33 LINK C HIS C 94 N MSE C 95 1555 1555 1.34 LINK C MSE C 95 N GLY C 96 1555 1555 1.33 LINK C GLY D 0 N MSE D 1 1555 1555 1.32 LINK C MSE D 1 N ILE D 2 1555 1555 1.34 LINK C ASP D 45 N MSE D 46 1555 1555 1.34 LINK C MSE D 46 N GLU D 47 1555 1555 1.35 LINK C HIS D 94 N MSE D 95 1555 1555 1.33 LINK C MSE D 95 N GLY D 96 1555 1555 1.33 SITE 1 AC1 9 LYS C 36 GLU C 97 THR C 98 HOH C 167 SITE 2 AC1 9 HOH C 177 SER D 4 ILE D 5 GLN D 8 SITE 3 AC1 9 HOH D 187 SITE 1 AC2 5 SER A 63 PRO A 64 LEU B 12 ARG B 16 SITE 2 AC2 5 HOH B 193 SITE 1 AC3 3 ARG A 7 HIS A 101 GLN A 104 SITE 1 AC4 3 PRO A 64 ASP A 66 GLU A 67 CRYST1 51.790 60.180 59.860 90.00 98.18 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019309 0.000000 0.002776 0.00000 SCALE2 0.000000 0.016617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016877 0.00000