PDB Short entry for 3E5M HEADER OXIDOREDUCTASE 14-AUG-08 3E5M TITLE CRYSTAL STRUCTURE OF THE HSCARG Y81A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMRA-LIKE FAMILY DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSCARG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMRAL1, HSCARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,G.MENG,X.DAI,M.LUO,X.ZHENG REVDAT 5 01-NOV-23 3E5M 1 REMARK REVDAT 4 10-NOV-21 3E5M 1 SEQADV REVDAT 3 25-OCT-17 3E5M 1 REMARK REVDAT 2 12-NOV-14 3E5M 1 KEYWDS REVDAT 1 12-MAY-09 3E5M 0 JRNL AUTH X.DAI,Y.LI,G.MENG,S.YAO,Y.ZHAO,Q.YU,J.ZHANG,M.LUO,X.ZHENG JRNL TITL NADPH IS AN ALLOSTERIC REGULATOR OF HSCARG JRNL REF J.MOL.BIOL. V. 387 1277 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19254724 JRNL DOI 10.1016/J.JMB.2009.02.049 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 17638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.794 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.387 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.790 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.750 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4710 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6366 ; 2.043 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ;10.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;35.447 ;23.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 836 ;22.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.635 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.455 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3544 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2162 ; 0.283 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3086 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.281 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3023 ; 1.523 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4703 ; 2.144 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1840 ; 2.780 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1663 ; 3.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BRUKER PROTEUM PACKAGE REMARK 200 DATA SCALING SOFTWARE : BRUKER PROTEUM PACKAGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22513 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2EXX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% MPD, 10MM POTASSIUM CHLORIDE, 0.1M REMARK 280 SODIUM HEPES, 1.86M AMMONIUM SULFATE, PH 7.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.51800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 299 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ASP B 3 REMARK 465 LEU B 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 116 CD2 LEU A 120 1.52 REMARK 500 OG1 THR A 148 O TYR A 207 1.69 REMARK 500 O MET A 65 CD2 LEU A 69 1.73 REMARK 500 NH2 ARG A 141 OD1 ASN A 211 1.94 REMARK 500 O THR A 79 OE2 GLU A 90 2.01 REMARK 500 O LEU B 228 OG1 THR B 232 2.12 REMARK 500 O GLN A 87 CG1 VAL A 91 2.13 REMARK 500 O GLU A 290 NZ LYS A 293 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 91 CB VAL A 91 CG1 -0.132 REMARK 500 VAL A 196 CB VAL A 196 CG1 -0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 96 CA - CB - CG ANGL. DEV. = 23.1 DEGREES REMARK 500 LEU A 96 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU A 276 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU B 6 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 41 152.70 -49.24 REMARK 500 THR A 79 132.63 -178.87 REMARK 500 ASN A 80 144.36 -35.41 REMARK 500 ALA A 81 -130.68 161.01 REMARK 500 TRP A 82 -156.75 -84.78 REMARK 500 GLU A 83 -128.83 41.95 REMARK 500 SER A 84 -109.04 58.64 REMARK 500 CYS A 85 -142.28 43.64 REMARK 500 GLU A 137 -77.24 -41.50 REMARK 500 GLU A 138 20.23 -66.54 REMARK 500 TYR A 139 -36.44 -136.29 REMARK 500 SER A 161 -70.48 -116.77 REMARK 500 PRO A 179 44.83 -75.89 REMARK 500 ASP A 182 -51.05 99.94 REMARK 500 LEU A 201 -25.01 -30.25 REMARK 500 MET A 203 47.88 -148.48 REMARK 500 SER A 215 161.52 173.41 REMARK 500 ARG A 233 -12.67 89.01 REMARK 500 ARG A 267 62.42 79.94 REMARK 500 GLN B 16 -72.34 -71.94 REMARK 500 GLN B 62 -77.62 -89.55 REMARK 500 ILE B 64 36.16 -98.81 REMARK 500 ASN B 80 87.12 26.79 REMARK 500 ALA B 127 118.94 -161.65 REMARK 500 PRO B 153 -162.94 -74.37 REMARK 500 SER B 161 -103.67 -121.66 REMARK 500 SER B 215 137.24 -179.89 REMARK 500 ARG B 233 25.52 42.94 REMARK 500 LYS B 240 66.10 62.44 REMARK 500 ARG B 267 74.74 52.81 REMARK 500 PRO B 280 -14.70 -46.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 56 GLY A 57 -118.51 REMARK 500 THR A 79 ASN A 80 -117.04 REMARK 500 ALA A 81 TRP A 82 109.16 REMARK 500 GLU A 83 SER A 84 -147.71 REMARK 500 SER A 84 CYS A 85 -112.41 REMARK 500 CYS A 85 SER A 86 -144.36 REMARK 500 TYR A 139 PHE A 140 146.85 REMARK 500 ASP A 170 GLY A 171 146.39 REMARK 500 THR A 180 GLY A 181 -113.71 REMARK 500 ASP A 186 GLY A 187 -149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EXX RELATED DB: PDB REMARK 900 THE WIDE-TYPE PROTEIN DBREF 3E5M A 1 299 UNP Q9HBL8 NMRL1_HUMAN 1 299 DBREF 3E5M B 1 299 UNP Q9HBL8 NMRL1_HUMAN 1 299 SEQADV 3E5M ALA A 81 UNP Q9HBL8 TYR 81 ENGINEERED MUTATION SEQADV 3E5M ALA B 81 UNP Q9HBL8 TYR 81 ENGINEERED MUTATION SEQRES 1 A 299 MET VAL ASP LYS LYS LEU VAL VAL VAL PHE GLY GLY THR SEQRES 2 A 299 GLY ALA GLN GLY GLY SER VAL ALA ARG THR LEU LEU GLU SEQRES 3 A 299 ASP GLY THR PHE LYS VAL ARG VAL VAL THR ARG ASN PRO SEQRES 4 A 299 ARG LYS LYS ALA ALA LYS GLU LEU ARG LEU GLN GLY ALA SEQRES 5 A 299 GLU VAL VAL GLN GLY ASP GLN ASP ASP GLN VAL ILE MET SEQRES 6 A 299 GLU LEU ALA LEU ASN GLY ALA TYR ALA THR PHE ILE VAL SEQRES 7 A 299 THR ASN ALA TRP GLU SER CYS SER GLN GLU GLN GLU VAL SEQRES 8 A 299 LYS GLN GLY LYS LEU LEU ALA ASP LEU ALA ARG ARG LEU SEQRES 9 A 299 GLY LEU HIS TYR VAL VAL TYR SER GLY LEU GLU ASN ILE SEQRES 10 A 299 LYS LYS LEU THR ALA GLY ARG LEU ALA ALA ALA HIS PHE SEQRES 11 A 299 ASP GLY LYS GLY GLU VAL GLU GLU TYR PHE ARG ASP ILE SEQRES 12 A 299 GLY VAL PRO MET THR SER VAL ARG LEU PRO CYS TYR PHE SEQRES 13 A 299 GLU ASN LEU LEU SER HIS PHE LEU PRO GLN LYS ALA PRO SEQRES 14 A 299 ASP GLY LYS SER TYR LEU LEU SER LEU PRO THR GLY ASP SEQRES 15 A 299 VAL PRO MET ASP GLY MET SER VAL SER ASP LEU GLY PRO SEQRES 16 A 299 VAL VAL LEU SER LEU LEU LYS MET PRO GLU LYS TYR VAL SEQRES 17 A 299 GLY GLN ASN ILE GLY LEU SER THR CYS ARG HIS THR ALA SEQRES 18 A 299 GLU GLU TYR ALA ALA LEU LEU THR LYS HIS THR ARG LYS SEQRES 19 A 299 VAL VAL HIS ASP ALA LYS MET THR PRO GLU ASP TYR GLU SEQRES 20 A 299 LYS LEU GLY PHE PRO GLY ALA ARG ASP LEU ALA ASN MET SEQRES 21 A 299 PHE ARG PHE TYR ALA LEU ARG PRO ASP ARG ASP ILE GLU SEQRES 22 A 299 LEU THR LEU ARG LEU ASN PRO LYS ALA LEU THR LEU ASP SEQRES 23 A 299 GLN TRP LEU GLU GLN HIS LYS GLY ASP PHE ASN LEU LEU SEQRES 1 B 299 MET VAL ASP LYS LYS LEU VAL VAL VAL PHE GLY GLY THR SEQRES 2 B 299 GLY ALA GLN GLY GLY SER VAL ALA ARG THR LEU LEU GLU SEQRES 3 B 299 ASP GLY THR PHE LYS VAL ARG VAL VAL THR ARG ASN PRO SEQRES 4 B 299 ARG LYS LYS ALA ALA LYS GLU LEU ARG LEU GLN GLY ALA SEQRES 5 B 299 GLU VAL VAL GLN GLY ASP GLN ASP ASP GLN VAL ILE MET SEQRES 6 B 299 GLU LEU ALA LEU ASN GLY ALA TYR ALA THR PHE ILE VAL SEQRES 7 B 299 THR ASN ALA TRP GLU SER CYS SER GLN GLU GLN GLU VAL SEQRES 8 B 299 LYS GLN GLY LYS LEU LEU ALA ASP LEU ALA ARG ARG LEU SEQRES 9 B 299 GLY LEU HIS TYR VAL VAL TYR SER GLY LEU GLU ASN ILE SEQRES 10 B 299 LYS LYS LEU THR ALA GLY ARG LEU ALA ALA ALA HIS PHE SEQRES 11 B 299 ASP GLY LYS GLY GLU VAL GLU GLU TYR PHE ARG ASP ILE SEQRES 12 B 299 GLY VAL PRO MET THR SER VAL ARG LEU PRO CYS TYR PHE SEQRES 13 B 299 GLU ASN LEU LEU SER HIS PHE LEU PRO GLN LYS ALA PRO SEQRES 14 B 299 ASP GLY LYS SER TYR LEU LEU SER LEU PRO THR GLY ASP SEQRES 15 B 299 VAL PRO MET ASP GLY MET SER VAL SER ASP LEU GLY PRO SEQRES 16 B 299 VAL VAL LEU SER LEU LEU LYS MET PRO GLU LYS TYR VAL SEQRES 17 B 299 GLY GLN ASN ILE GLY LEU SER THR CYS ARG HIS THR ALA SEQRES 18 B 299 GLU GLU TYR ALA ALA LEU LEU THR LYS HIS THR ARG LYS SEQRES 19 B 299 VAL VAL HIS ASP ALA LYS MET THR PRO GLU ASP TYR GLU SEQRES 20 B 299 LYS LEU GLY PHE PRO GLY ALA ARG ASP LEU ALA ASN MET SEQRES 21 B 299 PHE ARG PHE TYR ALA LEU ARG PRO ASP ARG ASP ILE GLU SEQRES 22 B 299 LEU THR LEU ARG LEU ASN PRO LYS ALA LEU THR LEU ASP SEQRES 23 B 299 GLN TRP LEU GLU GLN HIS LYS GLY ASP PHE ASN LEU LEU HELIX 1 1 GLY A 14 GLY A 28 1 15 HELIX 2 2 ALA A 43 GLN A 50 1 8 HELIX 3 3 ASP A 61 ASN A 70 1 10 HELIX 4 4 SER A 86 LEU A 104 1 19 HELIX 5 5 ASN A 116 THR A 121 1 6 HELIX 6 6 ALA A 127 GLU A 138 1 12 HELIX 7 7 TYR A 139 GLY A 144 1 6 HELIX 8 8 GLU A 157 SER A 161 5 5 HELIX 9 9 SER A 189 SER A 191 5 3 HELIX 10 10 ASP A 192 LYS A 202 1 11 HELIX 11 11 MET A 203 VAL A 208 1 6 HELIX 12 12 THR A 220 HIS A 231 1 12 HELIX 13 13 THR A 242 LEU A 249 1 8 HELIX 14 14 ALA A 254 LEU A 266 1 13 HELIX 15 15 ASP A 271 ASN A 279 1 9 HELIX 16 16 THR A 284 LYS A 293 1 10 HELIX 17 17 GLY B 14 GLY B 28 1 15 HELIX 18 18 LYS B 41 GLN B 50 1 10 HELIX 19 19 GLN B 62 ASN B 70 1 9 HELIX 20 20 GLU B 88 LEU B 104 1 17 HELIX 21 21 ASN B 116 THR B 121 1 6 HELIX 22 22 ALA B 127 GLY B 144 1 18 HELIX 23 23 GLU B 157 LEU B 160 5 4 HELIX 24 24 SER B 189 SER B 191 5 3 HELIX 25 25 ASP B 192 MET B 203 1 12 HELIX 26 26 MET B 203 VAL B 208 1 6 HELIX 27 27 THR B 220 ARG B 233 1 14 HELIX 28 28 THR B 242 LYS B 248 1 7 HELIX 29 29 GLY B 253 ALA B 265 1 13 HELIX 30 30 ASP B 271 ASN B 279 1 9 HELIX 31 31 THR B 284 HIS B 292 1 9 SHEET 1 A 7 VAL A 55 GLN A 56 0 SHEET 2 A 7 VAL A 32 THR A 36 1 N THR A 36 O VAL A 55 SHEET 3 A 7 VAL A 7 VAL A 9 1 N VAL A 7 O ARG A 33 SHEET 4 A 7 ALA A 74 ILE A 77 1 O PHE A 76 N VAL A 8 SHEET 5 A 7 TYR A 108 SER A 112 1 O VAL A 110 N THR A 75 SHEET 6 A 7 MET A 147 ARG A 151 1 O THR A 148 N VAL A 109 SHEET 7 A 7 ASN A 211 GLY A 213 1 O ILE A 212 N SER A 149 SHEET 1 B 3 CYS A 154 TYR A 155 0 SHEET 2 B 3 MET A 185 MET A 188 1 O MET A 188 N CYS A 154 SHEET 3 B 3 ARG A 218 HIS A 219 -1 O HIS A 219 N MET A 185 SHEET 1 C 3 GLN A 166 LYS A 167 0 SHEET 2 C 3 TYR A 174 LEU A 176 -1 O LEU A 175 N GLN A 166 SHEET 3 C 3 VAL A 236 ASP A 238 1 O HIS A 237 N TYR A 174 SHEET 1 D 7 GLU B 53 VAL B 55 0 SHEET 2 D 7 PHE B 30 VAL B 35 1 N VAL B 34 O VAL B 55 SHEET 3 D 7 LYS B 5 PHE B 10 1 N LYS B 5 O LYS B 31 SHEET 4 D 7 ALA B 74 ILE B 77 1 O PHE B 76 N VAL B 8 SHEET 5 D 7 TYR B 108 SER B 112 1 O SER B 112 N ILE B 77 SHEET 6 D 7 MET B 147 ARG B 151 1 O THR B 148 N TYR B 111 SHEET 7 D 7 ASN B 211 GLY B 213 1 O ILE B 212 N SER B 149 SHEET 1 E 3 CYS B 154 TYR B 155 0 SHEET 2 E 3 MET B 185 MET B 188 1 O MET B 188 N CYS B 154 SHEET 3 E 3 CYS B 217 HIS B 219 -1 O HIS B 219 N MET B 185 SHEET 1 F 3 GLN B 166 LYS B 167 0 SHEET 2 F 3 TYR B 174 LEU B 176 -1 O LEU B 175 N GLN B 166 SHEET 3 F 3 VAL B 236 ASP B 238 1 O HIS B 237 N TYR B 174 CISPEP 1 ASN A 80 ALA A 81 0 -19.73 CISPEP 2 ASN B 80 ALA B 81 0 12.36 CISPEP 3 ALA B 81 TRP B 82 0 -8.31 CISPEP 4 TRP B 82 GLU B 83 0 -14.26 CRYST1 46.956 89.036 84.182 90.00 88.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021297 0.000000 -0.000658 0.00000 SCALE2 0.000000 0.011231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011885 0.00000