PDB Short entry for 3E6C HEADER TRANSCRIPTION REGULATION/DNA 15-AUG-08 3E6C TITLE CPRK OCPA DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC NUCLEOTIDE-BINDING PROTEIN; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: CPRK; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*DGP*DGP*DCP*DAP*DTP*DGP*DTP*DTP*DAP*DAP*DTP*DGP*DC)-3'); COMPND 15 CHAIN: A; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: DHAF_0678; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS CPRK, HALORESPIRATION, TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION KEYWDS 2 REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.LEVY REVDAT 5 21-FEB-24 3E6C 1 REMARK REVDAT 4 20-OCT-21 3E6C 1 REMARK SEQADV REVDAT 3 13-JUL-11 3E6C 1 VERSN REVDAT 2 23-DEC-08 3E6C 1 JRNL VERSN REVDAT 1 30-SEP-08 3E6C 0 JRNL AUTH C.LEVY,K.PIKE,D.J.HEYES,M.G.JOYCE,K.GABOR,H.SMIDT, JRNL AUTH 2 J.VAN DER OOST,D.LEYS JRNL TITL MOLECULAR BASIS OF HALORESPIRATION CONTROL BY CPRK, A JRNL TITL 2 CRP-FNR TYPE TRANSCRIPTIONAL REGULATOR JRNL REF MOL.MICROBIOL. V. 70 151 2008 JRNL REFN ISSN 0950-382X JRNL PMID 18717788 JRNL DOI 10.1111/J.1365-2958.2008.06399.X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1807 REMARK 3 NUCLEIC ACID ATOMS : 533 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2453 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1510 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3423 ; 2.374 ; 2.251 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3708 ; 1.196 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 6.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;34.826 ;23.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;17.487 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2305 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 464 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1545 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1090 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1098 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.553 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1253 ; 1.532 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 457 ; 0.408 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1817 ; 2.012 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 2.485 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1604 ; 3.573 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 145 C 233 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9640 28.2290 -4.2760 REMARK 3 T TENSOR REMARK 3 T11: -0.3055 T22: -0.2685 REMARK 3 T33: 0.1196 T12: -0.0472 REMARK 3 T13: 0.0735 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 7.0397 L22: 1.6818 REMARK 3 L33: 2.3460 L12: -0.1072 REMARK 3 L13: 1.3607 L23: 0.0893 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.0743 S13: -1.2080 REMARK 3 S21: -0.0674 S22: 0.1945 S23: 0.2771 REMARK 3 S31: -0.0095 S32: -0.3512 S33: -0.1141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 140 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3760 51.5300 -10.8920 REMARK 3 T TENSOR REMARK 3 T11: -0.2711 T22: -0.2418 REMARK 3 T33: -0.4265 T12: -0.0313 REMARK 3 T13: 0.0234 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.6371 L22: 2.3830 REMARK 3 L33: 2.3569 L12: 0.0769 REMARK 3 L13: 0.2473 L23: 0.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.2388 S13: -0.0832 REMARK 3 S21: -0.3319 S22: 0.1020 S23: 0.0470 REMARK 3 S31: -0.2562 S32: -0.0454 S33: 0.0235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 27.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.77333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.88667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.77333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.88667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.77333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 49.88667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 99.77333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.88667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 VAL C 3 REMARK 465 GLU C 4 REMARK 465 GLY C 5 REMARK 465 LEU C 6 REMARK 465 GLY C 7 REMARK 465 LYS C 8 REMARK 465 ASP C 234 REMARK 465 PRO C 235 REMARK 465 ASN C 236 REMARK 465 SER C 237 REMARK 465 SER C 238 REMARK 465 SER C 239 REMARK 465 VAL C 240 REMARK 465 ASP C 241 REMARK 465 LYS C 242 REMARK 465 LEU C 243 REMARK 465 ALA C 244 REMARK 465 ALA C 245 REMARK 465 ALA C 246 REMARK 465 LEU C 247 REMARK 465 ASP C 248 REMARK 465 HIS C 249 REMARK 465 HIS C 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 211 CG CD CE NZ REMARK 470 LYS C 213 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 1150 O HOH B 1149 2.10 REMARK 500 O HOH C 1019 O HOH C 1124 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P DG B 501 O3' DC A 546 11555 1.69 REMARK 500 O HOH C 1123 O HOH C 1150 11555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP C 36 CG ASP C 36 OD2 0.171 REMARK 500 ASP C 36 C ASP C 36 O 0.166 REMARK 500 GLU C 68 CB GLU C 68 CG 0.145 REMARK 500 GLU C 68 CG GLU C 68 CD 0.122 REMARK 500 ALA C 138 CA ALA C 138 CB 0.130 REMARK 500 DC B 502 O3' DC B 502 C3' -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 26 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG C 26 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU C 178 CB - CG - CD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 DG B 501 OP1 - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG B 501 O5' - C5' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC B 502 P - O5' - C5' ANGL. DEV. = -16.6 DEGREES REMARK 500 DC B 502 O4' - C4' - C3' ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 504 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT B 505 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DA B 507 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA B 507 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC B 508 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA B 509 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 510 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 511 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC B 513 O4' - C4' - C3' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 535 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT A 540 O3' - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DT A 540 O4' - C1' - N1 ANGL. DEV. = -8.1 DEGREES REMARK 500 DT A 541 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 DT A 541 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA A 542 C3' - O3' - P ANGL. DEV. = 10.6 DEGREES REMARK 500 DA A 543 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA A 543 C3' - O3' - P ANGL. DEV. = 11.9 DEGREES REMARK 500 DG A 545 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG A 545 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG A 545 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC A 546 OP1 - P - OP2 ANGL. DEV. = 12.6 DEGREES REMARK 500 DC A 546 O5' - P - OP1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 546 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 546 C4' - C3' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DC A 546 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 10 114.56 -161.35 REMARK 500 CYS C 11 70.32 -110.71 REMARK 500 PHE C 20 72.55 13.92 REMARK 500 ASN C 218 83.13 -153.24 REMARK 500 TYR C 231 48.35 -140.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3C4 C 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E5Q RELATED DB: PDB REMARK 900 RELATED ID: 3E5U RELATED DB: PDB REMARK 900 RELATED ID: 3E6X RELATED DB: PDB REMARK 900 RELATED ID: 3E6B RELATED DB: PDB REMARK 900 RELATED ID: 3E6D RELATED DB: PDB DBREF 3E6C C 1 232 UNP Q18R04 Q18R04_DESHD 1 232 DBREF 3E6C B 501 513 PDB 3E6C 3E6C 501 513 DBREF 3E6C A 534 546 PDB 3E6C 3E6C 534 546 SEQADV 3E6C SER C 200 UNP Q18R04 CYS 200 ENGINEERED MUTATION SEQADV 3E6C SER C 233 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ASP C 234 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C PRO C 235 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ASN C 236 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C SER C 237 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C SER C 238 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C SER C 239 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C VAL C 240 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ASP C 241 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C LYS C 242 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C LEU C 243 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ALA C 244 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ALA C 245 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ALA C 246 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C LEU C 247 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C ASP C 248 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C HIS C 249 UNP Q18R04 EXPRESSION TAG SEQADV 3E6C HIS C 250 UNP Q18R04 EXPRESSION TAG SEQRES 1 C 250 MET SER VAL GLU GLY LEU GLY LYS ASP PHE CYS GLY ALA SEQRES 2 C 250 ILE ILE PRO ASP ASN PHE PHE PRO ILE GLU LYS LEU ARG SEQRES 3 C 250 ASN TYR THR GLN MET GLY LEU ILE ARG ASP PHE ALA LYS SEQRES 4 C 250 GLY SER ALA VAL ILE MET PRO GLY GLU GLU ILE THR SER SEQRES 5 C 250 MET ILE PHE LEU VAL GLU GLY LYS ILE LYS LEU ASP ILE SEQRES 6 C 250 ILE PHE GLU ASP GLY SER GLU LYS LEU LEU TYR TYR ALA SEQRES 7 C 250 GLY GLY ASN SER LEU ILE GLY LYS LEU TYR PRO THR GLY SEQRES 8 C 250 ASN ASN ILE TYR ALA THR ALA MET GLU PRO THR ARG THR SEQRES 9 C 250 CYS TRP PHE SER GLU LYS SER LEU ARG THR VAL PHE ARG SEQRES 10 C 250 THR ASP GLU ASP MET ILE PHE GLU ILE PHE LYS ASN TYR SEQRES 11 C 250 LEU THR LYS VAL ALA TYR TYR ALA ARG GLN VAL ALA GLU SEQRES 12 C 250 MET ASN THR TYR ASN PRO THR ILE ARG ILE LEU ARG LEU SEQRES 13 C 250 PHE TYR GLU LEU CYS SER SER GLN GLY LYS ARG VAL GLY SEQRES 14 C 250 ASP THR TYR GLU ILE THR MET PRO LEU SER GLN LYS SER SEQRES 15 C 250 ILE GLY GLU ILE THR GLY VAL HIS HIS VAL THR VAL SER SEQRES 16 C 250 ARG VAL LEU ALA SER LEU LYS ARG GLU ASN ILE LEU ASP SEQRES 17 C 250 LYS LYS LYS ASN LYS ILE ILE VAL TYR ASN LEU GLY GLU SEQRES 18 C 250 LEU LYS HIS LEU SER GLU GLN THR SER TYR TYR SER ASP SEQRES 19 C 250 PRO ASN SER SER SER VAL ASP LYS LEU ALA ALA ALA LEU SEQRES 20 C 250 ASP HIS HIS SEQRES 1 B 13 DG DC DA DT DT DA DA DC DA DT DG DC DC SEQRES 1 A 13 DG DG DC DA DT DG DT DT DA DA DT DG DC HET 3C4 C 604 12 HETNAM 3C4 (3-CHLORO-4-HYDROXYPHENYL)ACETIC ACID FORMUL 4 3C4 C8 H7 CL O3 FORMUL 5 HOH *152(H2 O) HELIX 1 1 ILE C 22 GLY C 32 5 11 HELIX 2 2 SER C 108 ASP C 119 1 12 HELIX 3 3 GLU C 120 ASN C 145 1 26 HELIX 4 4 ASN C 148 GLY C 165 1 18 HELIX 5 5 SER C 179 GLY C 188 1 10 HELIX 6 6 HIS C 190 GLU C 204 1 15 HELIX 7 7 ASN C 218 GLU C 227 1 10 SHEET 1 A 4 LEU C 33 PHE C 37 0 SHEET 2 A 4 THR C 102 PHE C 107 -1 O THR C 102 N PHE C 37 SHEET 3 A 4 MET C 53 GLU C 58 -1 N MET C 53 O PHE C 107 SHEET 4 A 4 LEU C 83 ILE C 84 -1 O ILE C 84 N ILE C 54 SHEET 1 B 4 ALA C 42 ILE C 44 0 SHEET 2 B 4 ILE C 94 ALA C 98 -1 O ALA C 96 N VAL C 43 SHEET 3 B 4 ILE C 61 ILE C 66 -1 N ASP C 64 O TYR C 95 SHEET 4 B 4 GLU C 72 ALA C 78 -1 O LEU C 75 N LEU C 63 SHEET 1 C 4 LYS C 166 VAL C 168 0 SHEET 2 C 4 THR C 171 THR C 175 -1 O GLU C 173 N LYS C 166 SHEET 3 C 4 LYS C 213 VAL C 216 -1 O ILE C 214 N ILE C 174 SHEET 4 C 4 LEU C 207 LYS C 209 -1 N ASP C 208 O ILE C 215 SITE 1 AC1 10 TYR C 76 ILE C 84 GLY C 85 LYS C 86 SITE 2 AC1 10 THR C 90 ASN C 92 ILE C 94 TYR C 130 SITE 3 AC1 10 LEU C 131 LYS C 133 CRYST1 100.600 100.600 149.660 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009940 0.005739 0.000000 0.00000 SCALE2 0.000000 0.011478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006682 0.00000