PDB Short entry for 3E8R HEADER HYDROLASE 20-AUG-08 3E8R TITLE CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF TACE WITH HYDROXAMATE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADAM 17; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 215-477; COMPND 5 SYNONYM: A DISINTEGRIN AND METALLOPROTEINASE DOMAIN 17, TNF-ALPHA- COMPND 6 CONVERTING ENZYME, TNF-ALPHA CONVERTASE, SNAKE VENOM-LIKE PROTEASE; COMPND 7 EC: 3.4.24.86; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAM17, CSVP, TACE; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS TACE ADAM17 ZN-ENDOPEPTIDASE, CLEAVAGE ON PAIR OF BASIC RESIDUES, KEYWDS 2 GLYCOPROTEIN, HYDROLASE, MEMBRANE, METAL-BINDING, METALLOPROTEASE, KEYWDS 3 NOTCH SIGNALING PATHWAY, PHOSPHOPROTEIN, PROTEASE, SH3-BINDING, KEYWDS 4 TRANSMEMBRANE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR P.ORTH REVDAT 7 20-OCT-21 3E8R 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 3E8R 1 VERSN REVDAT 5 10-NOV-09 3E8R 1 JRNL REVDAT 4 23-JUN-09 3E8R 1 JRNL REVDAT 3 02-JUN-09 3E8R 1 JRNL REVDAT 2 24-FEB-09 3E8R 1 VERSN REVDAT 1 21-OCT-08 3E8R 0 JRNL AUTH R.D.MAZZOLA,Z.ZHU,L.SINNING,B.MCKITTRICK,B.LAVEY,J.SPITLER, JRNL AUTH 2 J.KOZLOWSKI,S.NENG-YANG,G.ZHOU,Z.GUO,P.ORTH,V.MADISON,J.SUN, JRNL AUTH 3 D.LUNDELL,X.NIU JRNL TITL DISCOVERY OF NOVEL HYDROXAMATES AS HIGHLY POTENT TUMOR JRNL TITL 2 NECROSIS FACTOR-ALPHA CONVERTING ENZYME INHIBITORS. PART II: JRNL TITL 3 OPTIMIZATION OF THE S3' POCKET. JRNL REF BIOORG.MED.CHEM.LETT. V. 18 5809 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18835710 JRNL DOI 10.1016/J.BMCL.2008.09.045 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.1.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 44191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.930 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.35 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 7148 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2291 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7010 REMARK 3 BIN R VALUE (WORKING SET) : 0.2285 REMARK 3 BIN FREE R VALUE : 0.2633 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.51284 REMARK 3 B22 (A**2) : 2.66412 REMARK 3 B33 (A**2) : 0.84871 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4195 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 5654 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 814 ; 0.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 137 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 692 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 4089 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 56 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.48 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 10.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 10% 2-PROPANOL, 100MM REMARK 280 SODIUM CITRATE BUFFER, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.36100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.49250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.88050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.49250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.36100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.88050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 215 REMARK 465 ALA A 216 REMARK 465 ASP A 217 REMARK 465 ARG A 357 REMARK 465 ALA A 358 REMARK 465 ASN A 359 REMARK 465 SER A 360 REMARK 465 VAL A 440 REMARK 465 SER A 441 REMARK 465 ASN A 475 REMARK 465 LYS A 476 REMARK 465 VAL A 477 REMARK 465 GLY A 478 REMARK 465 SER A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 ARG B 215 REMARK 465 ALA B 216 REMARK 465 ASP B 217 REMARK 465 PRO B 218 REMARK 465 ASP B 219 REMARK 465 SER B 474 REMARK 465 ASN B 475 REMARK 465 LYS B 476 REMARK 465 VAL B 477 REMARK 465 GLY B 478 REMARK 465 SER B 479 REMARK 465 HIS B 480 REMARK 465 HIS B 481 REMARK 465 HIS B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 241 CD NE CZ NH1 NH2 REMARK 470 LYS A 460 CG CD CE NZ REMARK 470 GLU A 472 CG CD OE1 OE2 REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 283 CD NE CZ NH1 NH2 REMARK 470 LYS B 302 CD CE NZ REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 GLU B 463 CG CD OE1 OE2 REMARK 470 GLN B 467 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 429 O HOH A 686 2.15 REMARK 500 O GLY A 374 O HOH A 629 2.16 REMARK 500 O LYS B 296 O HOH B 518 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 270 -113.61 -134.70 REMARK 500 CYS A 365 121.70 73.12 REMARK 500 ASN A 381 57.66 -91.69 REMARK 500 CYS A 469 -1.08 -141.54 REMARK 500 MET B 221 -58.26 -123.15 REMARK 500 ALA B 270 -107.52 -106.65 REMARK 500 SER B 360 -157.60 -95.03 REMARK 500 CYS B 365 116.18 85.08 REMARK 500 CYS B 469 -3.27 -145.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 INN A 4 O REMARK 620 2 INN A 4 O4 72.9 REMARK 620 3 HIS A 405 NE2 107.5 99.9 REMARK 620 4 HIS A 409 NE2 154.8 98.3 97.2 REMARK 620 5 HIS A 415 NE2 86.7 155.4 99.2 94.5 REMARK 620 6 615 A 486 O2 20.0 70.4 88.2 168.3 94.9 REMARK 620 7 615 A 486 O4 78.9 9.2 91.5 95.7 164.1 73.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 405 NE2 REMARK 620 2 HIS B 409 NE2 98.2 REMARK 620 3 HIS B 415 NE2 99.2 98.4 REMARK 620 4 615 B 486 O2 106.3 152.7 89.7 REMARK 620 5 615 B 486 O4 96.8 89.3 161.0 76.0 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOETHYL]-4- REMARK 630 METHYLPENTANOYL}-3-METHYL-L-VALYL-N-(2-AMINOETHYL)-L-ALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 INN A 4 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 2HM TBG ALA EDN REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 615 A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE INN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 615 B 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DDF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TACE IN COMPLEX WITH TAPI-2 REMARK 900 RELATED ID: 2FV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TACE IN COMPLEX WITH IK682 REMARK 900 RELATED ID: 2FV9 RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF TACE IN COMPLEX WITH JMV 390-1 DBREF 3E8R A 215 477 UNP P78536 ADA17_HUMAN 215 477 DBREF 3E8R B 215 477 UNP P78536 ADA17_HUMAN 215 477 SEQADV 3E8R ALA A 266 UNP P78536 SER 266 ENGINEERED MUTATION SEQADV 3E8R GLY A 353 UNP P78536 VAL 353 ENGINEERED MUTATION SEQADV 3E8R GLN A 452 UNP P78536 ASN 452 ENGINEERED MUTATION SEQADV 3E8R GLY A 478 UNP P78536 EXPRESSION TAG SEQADV 3E8R SER A 479 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 480 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 481 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 482 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 483 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 484 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS A 485 UNP P78536 EXPRESSION TAG SEQADV 3E8R ALA B 266 UNP P78536 SER 266 ENGINEERED MUTATION SEQADV 3E8R GLY B 353 UNP P78536 VAL 353 ENGINEERED MUTATION SEQADV 3E8R GLN B 452 UNP P78536 ASN 452 ENGINEERED MUTATION SEQADV 3E8R GLY B 478 UNP P78536 EXPRESSION TAG SEQADV 3E8R SER B 479 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 480 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 481 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 482 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 483 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 484 UNP P78536 EXPRESSION TAG SEQADV 3E8R HIS B 485 UNP P78536 EXPRESSION TAG SEQRES 1 A 271 ARG ALA ASP PRO ASP PRO MET LYS ASN THR CYS LYS LEU SEQRES 2 A 271 LEU VAL VAL ALA ASP HIS ARG PHE TYR ARG TYR MET GLY SEQRES 3 A 271 ARG GLY GLU GLU SER THR THR THR ASN TYR LEU ILE GLU SEQRES 4 A 271 LEU ILE ASP ARG VAL ASP ASP ILE TYR ARG ASN THR ALA SEQRES 5 A 271 TRP ASP ASN ALA GLY PHE LYS GLY TYR GLY ILE GLN ILE SEQRES 6 A 271 GLU GLN ILE ARG ILE LEU LYS SER PRO GLN GLU VAL LYS SEQRES 7 A 271 PRO GLY GLU LYS HIS TYR ASN MET ALA LYS SER TYR PRO SEQRES 8 A 271 ASN GLU GLU LYS ASP ALA TRP ASP VAL LYS MET LEU LEU SEQRES 9 A 271 GLU GLN PHE SER PHE ASP ILE ALA GLU GLU ALA SER LYS SEQRES 10 A 271 VAL CYS LEU ALA HIS LEU PHE THR TYR GLN ASP PHE ASP SEQRES 11 A 271 MET GLY THR LEU GLY LEU ALA TYR GLY GLY SER PRO ARG SEQRES 12 A 271 ALA ASN SER HIS GLY GLY VAL CYS PRO LYS ALA TYR TYR SEQRES 13 A 271 SER PRO VAL GLY LYS LYS ASN ILE TYR LEU ASN SER GLY SEQRES 14 A 271 LEU THR SER THR LYS ASN TYR GLY LYS THR ILE LEU THR SEQRES 15 A 271 LYS GLU ALA ASP LEU VAL THR THR HIS GLU LEU GLY HIS SEQRES 16 A 271 ASN PHE GLY ALA GLU HIS ASP PRO ASP GLY LEU ALA GLU SEQRES 17 A 271 CYS ALA PRO ASN GLU ASP GLN GLY GLY LYS TYR VAL MET SEQRES 18 A 271 TYR PRO ILE ALA VAL SER GLY ASP HIS GLU ASN ASN LYS SEQRES 19 A 271 MET PHE SER GLN CYS SER LYS GLN SER ILE TYR LYS THR SEQRES 20 A 271 ILE GLU SER LYS ALA GLN GLU CYS PHE GLN GLU ARG SER SEQRES 21 A 271 ASN LYS VAL GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 271 ARG ALA ASP PRO ASP PRO MET LYS ASN THR CYS LYS LEU SEQRES 2 B 271 LEU VAL VAL ALA ASP HIS ARG PHE TYR ARG TYR MET GLY SEQRES 3 B 271 ARG GLY GLU GLU SER THR THR THR ASN TYR LEU ILE GLU SEQRES 4 B 271 LEU ILE ASP ARG VAL ASP ASP ILE TYR ARG ASN THR ALA SEQRES 5 B 271 TRP ASP ASN ALA GLY PHE LYS GLY TYR GLY ILE GLN ILE SEQRES 6 B 271 GLU GLN ILE ARG ILE LEU LYS SER PRO GLN GLU VAL LYS SEQRES 7 B 271 PRO GLY GLU LYS HIS TYR ASN MET ALA LYS SER TYR PRO SEQRES 8 B 271 ASN GLU GLU LYS ASP ALA TRP ASP VAL LYS MET LEU LEU SEQRES 9 B 271 GLU GLN PHE SER PHE ASP ILE ALA GLU GLU ALA SER LYS SEQRES 10 B 271 VAL CYS LEU ALA HIS LEU PHE THR TYR GLN ASP PHE ASP SEQRES 11 B 271 MET GLY THR LEU GLY LEU ALA TYR GLY GLY SER PRO ARG SEQRES 12 B 271 ALA ASN SER HIS GLY GLY VAL CYS PRO LYS ALA TYR TYR SEQRES 13 B 271 SER PRO VAL GLY LYS LYS ASN ILE TYR LEU ASN SER GLY SEQRES 14 B 271 LEU THR SER THR LYS ASN TYR GLY LYS THR ILE LEU THR SEQRES 15 B 271 LYS GLU ALA ASP LEU VAL THR THR HIS GLU LEU GLY HIS SEQRES 16 B 271 ASN PHE GLY ALA GLU HIS ASP PRO ASP GLY LEU ALA GLU SEQRES 17 B 271 CYS ALA PRO ASN GLU ASP GLN GLY GLY LYS TYR VAL MET SEQRES 18 B 271 TYR PRO ILE ALA VAL SER GLY ASP HIS GLU ASN ASN LYS SEQRES 19 B 271 MET PHE SER GLN CYS SER LYS GLN SER ILE TYR LYS THR SEQRES 20 B 271 ILE GLU SER LYS ALA GLN GLU CYS PHE GLN GLU ARG SER SEQRES 21 B 271 ASN LYS VAL GLY SER HIS HIS HIS HIS HIS HIS HET ZN A 1 1 HET 615 A 486 35 HET INN A 4 29 HET ZN B 2 1 HET 615 B 486 35 HET CIT B 3 13 HETNAM ZN ZINC ION HETNAM 615 (1R,2S)-N~2~-HYDROXY-1-{4-[(2-PHENYLQUINOLIN-4-YL) HETNAM 2 615 METHOXY]BENZYL}CYCLOPROPANE-1,2-DICARBOXAMIDE HETNAM INN N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOETHYL]-4- HETNAM 2 INN METHYLPENTANOYL}-3-METHYL-L-VALYL-N-(2-AMINOETHYL)-L- HETNAM 3 INN ALANINAMIDE HETNAM CIT CITRIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 615 2(C28 H25 N3 O4) FORMUL 5 INN C19 H37 N5 O5 FORMUL 8 CIT C6 H8 O7 FORMUL 9 HOH *449(H2 O) HELIX 1 1 ASP A 219 LYS A 222 5 4 HELIX 2 2 ASP A 232 MET A 239 1 8 HELIX 3 3 GLU A 243 ASN A 264 1 22 HELIX 4 4 ASP A 313 ILE A 325 1 13 HELIX 5 5 ILE A 325 SER A 330 1 6 HELIX 6 6 PHE A 343 THR A 347 5 5 HELIX 7 7 LEU A 395 GLY A 412 1 18 HELIX 8 8 ASN A 426 GLY A 430 5 5 HELIX 9 9 HIS A 444 MET A 449 5 6 HELIX 10 10 SER A 451 PHE A 470 1 20 HELIX 11 11 ASP B 232 MET B 239 1 8 HELIX 12 12 GLU B 243 ASN B 264 1 22 HELIX 13 13 ASP B 313 ILE B 325 1 13 HELIX 14 14 ILE B 325 SER B 330 1 6 HELIX 15 15 PHE B 343 THR B 347 5 5 HELIX 16 16 LEU B 395 PHE B 411 1 17 HELIX 17 17 ASN B 426 GLY B 430 5 5 HELIX 18 18 HIS B 444 MET B 449 5 6 HELIX 19 19 SER B 451 PHE B 470 1 20 SHEET 1 A 5 GLY A 276 ILE A 284 0 SHEET 2 A 5 THR A 224 ALA A 231 1 N LEU A 227 O GLU A 280 SHEET 3 A 5 LEU A 334 THR A 339 1 O PHE A 338 N VAL A 230 SHEET 4 A 5 SER A 382 SER A 386 1 O THR A 385 N THR A 339 SHEET 5 A 5 GLY A 349 ALA A 351 -1 N LEU A 350 O LEU A 384 SHEET 1 B 2 ALA A 368 SER A 371 0 SHEET 2 B 2 LYS A 376 TYR A 379 -1 O LYS A 376 N SER A 371 SHEET 1 C 2 LYS A 388 ASN A 389 0 SHEET 2 C 2 LYS A 392 THR A 393 -1 O LYS A 392 N ASN A 389 SHEET 1 D 5 GLY B 276 ILE B 284 0 SHEET 2 D 5 THR B 224 ALA B 231 1 N LEU B 227 O GLU B 280 SHEET 3 D 5 LEU B 334 THR B 339 1 O PHE B 338 N VAL B 230 SHEET 4 D 5 SER B 382 SER B 386 1 O THR B 385 N LEU B 337 SHEET 5 D 5 GLY B 349 ALA B 351 -1 N LEU B 350 O LEU B 384 SHEET 1 E 2 ALA B 368 SER B 371 0 SHEET 2 E 2 LYS B 376 TYR B 379 -1 O ILE B 378 N TYR B 369 SHEET 1 F 2 LYS B 388 ASN B 389 0 SHEET 2 F 2 LYS B 392 THR B 393 -1 O LYS B 392 N ASN B 389 SSBOND 1 CYS A 225 CYS A 333 1555 1555 2.04 SSBOND 2 CYS A 365 CYS A 469 1555 1555 2.03 SSBOND 3 CYS A 423 CYS A 453 1555 1555 2.03 SSBOND 4 CYS B 225 CYS B 333 1555 1555 2.05 SSBOND 5 CYS B 365 CYS B 469 1555 1555 2.03 SSBOND 6 CYS B 423 CYS B 453 1555 1555 2.04 LINK ZN ZN A 1 O BINN A 4 1555 1555 2.24 LINK ZN ZN A 1 O4 BINN A 4 1555 1555 2.23 LINK ZN ZN A 1 NE2 HIS A 405 1555 1555 2.04 LINK ZN ZN A 1 NE2 HIS A 409 1555 1555 2.16 LINK ZN ZN A 1 NE2 HIS A 415 1555 1555 2.04 LINK ZN ZN A 1 O2 A615 A 486 1555 1555 2.03 LINK ZN ZN A 1 O4 A615 A 486 1555 1555 2.31 LINK ZN ZN B 2 NE2 HIS B 405 1555 1555 2.13 LINK ZN ZN B 2 NE2 HIS B 409 1555 1555 2.11 LINK ZN ZN B 2 NE2 HIS B 415 1555 1555 2.05 LINK ZN ZN B 2 O2 615 B 486 1555 1555 1.94 LINK ZN ZN B 2 O4 615 B 486 1555 1555 2.12 CISPEP 1 TYR A 304 PRO A 305 0 9.13 CISPEP 2 TYR B 304 PRO B 305 0 6.96 CISPEP 3 SER B 355 PRO B 356 0 6.38 SITE 1 AC1 6 INN A 4 HIS A 405 HIS A 409 HIS A 415 SITE 2 AC1 6 615 A 486 HOH A 631 SITE 1 AC2 22 ZN A 1 GLY A 346 THR A 347 LEU A 348 SITE 2 AC2 22 GLY A 349 GLU A 398 LEU A 401 HIS A 405 SITE 3 AC2 22 GLU A 406 HIS A 409 HIS A 415 TYR A 433 SITE 4 AC2 22 VAL A 434 TYR A 436 PRO A 437 ALA A 439 SITE 5 AC2 22 ASN A 447 HOH A 509 HOH A 557 HOH A 634 SITE 6 AC2 22 HOH A 649 HOH A 696 SITE 1 AC3 24 ZN A 1 GLU A 327 SER A 330 LYS A 331 SITE 2 AC3 24 MET A 345 GLY A 346 THR A 347 LEU A 348 SITE 3 AC3 24 GLY A 349 TYR A 390 HIS A 405 GLU A 406 SITE 4 AC3 24 HIS A 409 HIS A 415 TYR A 436 PRO A 437 SITE 5 AC3 24 ILE A 438 ALA A 439 HOH A 509 HOH A 631 SITE 6 AC3 24 HOH A 632 HOH A 634 HOH A 694 ARG B 357 SITE 1 AC4 5 HIS B 405 HIS B 409 HIS B 415 615 B 486 SITE 2 AC4 5 HOH B 692 SITE 1 AC5 23 ZN B 2 GLY B 346 THR B 347 LEU B 348 SITE 2 AC5 23 GLY B 349 GLU B 398 LEU B 401 HIS B 405 SITE 3 AC5 23 GLU B 406 HIS B 409 HIS B 415 TYR B 433 SITE 4 AC5 23 VAL B 434 TYR B 436 PRO B 437 ILE B 438 SITE 5 AC5 23 ALA B 439 VAL B 440 GLY B 442 ASN B 447 SITE 6 AC5 23 HOH B 652 HOH B 654 HOH B 692 SITE 1 AC6 10 PRO A 356 HIS A 415 PRO A 437 ARG B 357 SITE 2 AC6 10 ASN B 359 SER B 360 HIS B 361 HOH B 556 SITE 3 AC6 10 HOH B 565 HOH B 732 CRYST1 74.722 75.761 102.985 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009710 0.00000