PDB Short entry for 3EAB HEADER CELL CYCLE 25-AUG-08 3EAB TITLE CRYSTAL STRUCTURE OF SPASTIN MIT IN COMPLEX WITH ESCRT III COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPASTIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 112 TO 196; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHMP1B; COMPND 8 CHAIN: G, H, I, J, K, L; COMPND 9 FRAGMENT: UNP RESIDUES 145 TO 194; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPAST, KIAA1083, SPG4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PHIS2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPASTIN, CHMP, MIT, ESCRT, ALTERNATIVE SPLICING, ATP-BINDING, KEYWDS 2 CYTOPLASM, DISEASE MUTATION, HEREDITARY SPASTIC PARAPLEGIA, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, POLYMORPHISM, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR D.YANG,N.RIMANCHI,B.RENVOISE,J.LIPPINCOTT-SCHWARTZ,C.BLACKSTONE, AUTHOR 2 J.H.HURLEY REVDAT 5 21-FEB-24 3EAB 1 SEQADV REVDAT 4 09-JUN-09 3EAB 1 REVDAT REVDAT 3 24-FEB-09 3EAB 1 VERSN REVDAT 2 30-DEC-08 3EAB 1 JRNL REVDAT 1 11-NOV-08 3EAB 0 JRNL AUTH D.YANG,N.RISMANCHI,B.RENVOISE,J.LIPPINCOTT-SCHWARTZ, JRNL AUTH 2 C.BLACKSTONE,J.H.HURLEY JRNL TITL STRUCTURAL BASIS FOR MIDBODY TARGETING OF SPASTIN BY THE JRNL TITL 2 ESCRT-III PROTEIN CHMP1B. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 1278 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18997780 JRNL DOI 10.1038/NSMB.1512 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 58202.660 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 48059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2438 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6247 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 362 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.76000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -13.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.630 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 43.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920, 0.97934, 0.97166 REMARK 200 MONOCHROMATOR : SI 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 2000 MME, 0.2 M AMMONIA REMARK 280 SULFATE, 0.1 M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 75.98350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.74650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.98350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.74650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 108 REMARK 465 GLU D 196 REMARK 465 MET E 108 REMARK 465 GLY E 109 REMARK 465 SER E 110 REMARK 465 LEU F 195 REMARK 465 GLU F 196 REMARK 465 LEU G 164 REMARK 465 ASN G 165 REMARK 465 MET G 166 REMARK 465 GLU G 167 REMARK 465 LEU G 168 REMARK 465 PRO G 169 REMARK 465 GLN G 170 REMARK 465 GLY G 171 REMARK 465 GLN G 172 REMARK 465 ASP G 197 REMARK 465 GLN H 148 REMARK 465 VAL H 149 REMARK 465 LEU H 164 REMARK 465 ASN H 165 REMARK 465 MET H 166 REMARK 465 GLU H 167 REMARK 465 LEU H 168 REMARK 465 PRO H 169 REMARK 465 GLN H 170 REMARK 465 GLY H 171 REMARK 465 GLN H 172 REMARK 465 ASN I 165 REMARK 465 MET I 166 REMARK 465 GLU I 167 REMARK 465 LEU I 168 REMARK 465 PRO I 169 REMARK 465 GLN I 170 REMARK 465 GLY I 171 REMARK 465 GLN I 172 REMARK 465 THR I 173 REMARK 465 LEU J 164 REMARK 465 ASN J 165 REMARK 465 MET J 166 REMARK 465 GLU J 167 REMARK 465 LEU J 168 REMARK 465 PRO J 169 REMARK 465 GLN J 170 REMARK 465 GLY J 171 REMARK 465 GLN J 172 REMARK 465 THR J 173 REMARK 465 LEU J 195 REMARK 465 ARG J 196 REMARK 465 ASP J 197 REMARK 465 GLN K 148 REMARK 465 LEU K 164 REMARK 465 ASN K 165 REMARK 465 MET K 166 REMARK 465 GLU K 167 REMARK 465 LEU K 168 REMARK 465 PRO K 169 REMARK 465 GLN K 170 REMARK 465 GLY K 171 REMARK 465 GLN K 172 REMARK 465 THR K 173 REMARK 465 ASP K 197 REMARK 465 ASP L 163 REMARK 465 LEU L 164 REMARK 465 ASN L 165 REMARK 465 MET L 166 REMARK 465 GLU L 167 REMARK 465 LEU L 168 REMARK 465 PRO L 169 REMARK 465 GLN L 170 REMARK 465 GLY L 171 REMARK 465 GLN L 172 REMARK 465 THR L 173 REMARK 465 ARG L 196 REMARK 465 ASP L 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN D 193 N LEU D 195 1.90 REMARK 500 OE1 GLU D 147 NZ LYS D 151 2.06 REMARK 500 O LEU I 195 N ASP I 197 2.11 REMARK 500 O MET A 108 N SER A 110 2.14 REMARK 500 O LEU A 131 OE1 GLU A 135 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET L 156 CE MET L 156 2555 1.72 REMARK 500 OE2 GLU B 147 NE2 GLN D 144 4457 1.89 REMARK 500 NE2 GLN F 144 OE2 GLU F 147 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 121 CE LYS B 121 NZ 0.195 REMARK 500 LYS B 150 CD LYS B 150 CE 0.158 REMARK 500 LYS B 150 CE LYS B 150 NZ 0.371 REMARK 500 LYS C 150 CE LYS C 150 NZ 0.387 REMARK 500 LYS F 121 CD LYS F 121 CE 0.205 REMARK 500 LYS F 121 CE LYS F 121 NZ 0.291 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 150 CD - CE - NZ ANGL. DEV. = -17.5 DEGREES REMARK 500 LYS C 150 CD - CE - NZ ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS F 121 CD - CE - NZ ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 136 -60.48 -97.68 REMARK 500 GLU A 137 147.11 -32.59 REMARK 500 LYS A 138 -109.85 -68.81 REMARK 500 LYS A 142 -9.70 -56.08 REMARK 500 LYS B 138 -108.08 -61.95 REMARK 500 GLN B 193 -9.90 -52.98 REMARK 500 LEU B 195 -70.15 -111.86 REMARK 500 LYS C 138 -127.45 -70.08 REMARK 500 LYS D 138 -177.59 -54.84 REMARK 500 GLN D 193 -88.04 -43.43 REMARK 500 LEU D 194 -37.30 -10.41 REMARK 500 LYS E 138 -109.16 -64.14 REMARK 500 LYS E 142 1.89 -68.10 REMARK 500 LYS F 138 -111.14 -50.78 REMARK 500 GLN F 193 59.94 -59.98 REMARK 500 ARG H 196 37.83 -63.40 REMARK 500 ARG I 196 -9.55 -26.75 REMARK 500 ASP J 158 18.70 -59.17 REMARK 500 GLU J 159 -108.71 -88.07 REMARK 500 LEU J 192 41.15 -77.30 REMARK 500 MET K 151 -69.70 -29.97 REMARK 500 ALA K 193 4.29 -66.94 REMARK 500 ARG K 194 1.93 -60.05 REMARK 500 LEU K 195 9.29 -56.41 REMARK 500 MET L 151 -67.04 -24.87 REMARK 500 ARG L 194 0.73 -65.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 167 GLY A 168 -142.85 REMARK 500 LYS B 138 ALA B 139 135.37 REMARK 500 LYS C 138 ALA C 139 143.43 REMARK 500 GLY C 166 GLN C 167 -148.74 REMARK 500 GLY E 166 GLN E 167 -148.12 REMARK 500 ASP J 158 GLU J 159 146.69 REMARK 500 ALA J 193 ARG J 194 147.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG E 191 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET F 108 10.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 3EAB A 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB B 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB C 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB D 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB E 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB F 112 196 UNP Q9UBP0 SPAST_HUMAN 112 196 DBREF 3EAB G 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 DBREF 3EAB H 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 DBREF 3EAB I 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 DBREF 3EAB J 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 DBREF 3EAB K 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 DBREF 3EAB L 148 197 UNP B2RA72 B2RA72_HUMAN 145 194 SEQADV 3EAB MET A 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY A 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER A 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET A 111 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET B 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY B 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER B 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET B 111 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET C 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY C 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER C 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET C 111 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET D 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY D 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER D 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET D 111 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET E 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY E 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER E 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET E 111 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET F 108 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB GLY F 109 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB SER F 110 UNP Q9UBP0 EXPRESSION TAG SEQADV 3EAB MET F 111 UNP Q9UBP0 EXPRESSION TAG SEQRES 1 A 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 A 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 A 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 A 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 A 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 A 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 A 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 B 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 B 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 B 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 B 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 B 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 B 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 B 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 C 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 C 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 C 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 C 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 C 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 C 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 C 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 D 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 D 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 D 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 D 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 D 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 D 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 D 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 E 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 E 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 E 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 E 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 E 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 E 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 E 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 F 89 MET GLY SER MET GLU ALA GLU ARG VAL ARG VAL PHE HIS SEQRES 2 F 89 LYS GLN ALA PHE GLU TYR ILE SER ILE ALA LEU ARG ILE SEQRES 3 F 89 ASP GLU ASP GLU LYS ALA GLY GLN LYS GLU GLN ALA VAL SEQRES 4 F 89 GLU TRP TYR LYS LYS GLY ILE GLU GLU LEU GLU LYS GLY SEQRES 5 F 89 ILE ALA VAL ILE VAL THR GLY GLN GLY GLU GLN CYS GLU SEQRES 6 F 89 ARG ALA ARG ARG LEU GLN ALA LYS MET MET THR ASN LEU SEQRES 7 F 89 VAL MET ALA LYS ASP ARG LEU GLN LEU LEU GLU SEQRES 1 G 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 G 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 G 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 G 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP SEQRES 1 H 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 H 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 H 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 H 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP SEQRES 1 I 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 I 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 I 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 I 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP SEQRES 1 J 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 J 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 J 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 J 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP SEQRES 1 K 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 K 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 K 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 K 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP SEQRES 1 L 50 GLN VAL ASP MET LEU LEU GLN GLU MET ALA ASP GLU ALA SEQRES 2 L 50 GLY LEU ASP LEU ASN MET GLU LEU PRO GLN GLY GLN THR SEQRES 3 L 50 GLY SER VAL GLY THR SER VAL ALA SER ALA GLU GLN ASP SEQRES 4 L 50 GLU LEU SER GLN ARG LEU ALA ARG LEU ARG ASP HELIX 1 1 SER A 110 GLU A 137 1 28 HELIX 2 2 GLN A 141 GLN A 144 5 4 HELIX 3 3 ALA A 145 VAL A 162 1 18 HELIX 4 4 GLY A 168 GLU A 196 1 29 HELIX 5 6 LYS B 142 VAL B 162 1 21 HELIX 6 7 GLY B 168 GLN B 193 1 26 HELIX 7 8 MET C 108 GLU C 137 1 30 HELIX 8 9 LYS C 142 ALA C 161 1 20 HELIX 9 10 GLY C 168 GLU C 196 1 29 HELIX 10 11 GLY D 109 GLU D 137 1 29 HELIX 11 12 GLN D 141 GLN D 144 5 4 HELIX 12 13 ALA D 145 VAL D 162 1 18 HELIX 13 14 GLY D 168 LEU D 195 1 28 HELIX 14 15 GLU E 112 GLU E 137 1 26 HELIX 15 16 GLN E 141 GLN E 144 5 4 HELIX 16 17 ALA E 145 VAL E 162 1 18 HELIX 17 18 GLY E 168 GLU E 196 1 29 HELIX 18 19 GLY F 109 GLU F 137 1 29 HELIX 19 20 LYS F 142 VAL F 162 1 21 HELIX 20 21 GLY F 168 LEU F 192 1 25 HELIX 21 22 ASP G 150 ALA G 160 1 11 HELIX 22 23 THR G 173 ARG G 194 1 22 HELIX 23 24 ASP H 150 ALA H 160 1 11 HELIX 24 25 THR H 173 ARG H 196 1 24 HELIX 25 26 ASP I 150 GLY I 161 1 12 HELIX 26 27 GLY I 174 ARG I 196 1 23 HELIX 27 28 ASP J 150 ASP J 158 1 9 HELIX 28 29 GLY J 174 LEU J 192 1 19 HELIX 29 30 ASP K 150 ALA K 160 1 11 HELIX 30 31 GLY K 174 ALA K 193 1 20 HELIX 31 32 ARG K 194 ARG K 196 5 3 HELIX 32 33 ASP L 150 ALA L 160 1 11 HELIX 33 34 GLY L 174 ARG L 194 1 21 CRYST1 151.967 95.493 100.360 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009964 0.00000