PDB Short entry for 3ECP HEADER DNA RECOMBINATION/DNA 01-SEP-08 3ECP TITLE CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH 5' PHOSPHORYLATED TITLE 2 TRANSPOSON END DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TN5 TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TN5 TRANSPOSASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA TRANSFERRED STRAND; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA NON-TRANSFERRED STRAND; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ORF163; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTYB1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: TRANSPOSASE RECOGNITION SEQUENCE OCCURS NATURALLY IN SOURCE 12 THE TN5 TRANSPOSON; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: TRANSPOSASE RECOGNITION SEQUENCE OCCURS NATURALLY IN SOURCE 16 THE TN5 TRANSPOSON KEYWDS TRANSPOSASE, RIBONUCLEASE H-LIKE MOTIF, PROTEIN-DNA COMPLEX, SYNAPTIC KEYWDS 2 COMPLEX, DNA RECOMBINATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.A.KLENCHIN REVDAT 6 30-AUG-23 3ECP 1 REMARK REVDAT 5 20-OCT-21 3ECP 1 REMARK SEQADV REVDAT 4 29-NOV-17 3ECP 1 REMARK REVDAT 3 13-JUL-11 3ECP 1 VERSN REVDAT 2 23-DEC-08 3ECP 1 JRNL VERSN REVDAT 1 21-OCT-08 3ECP 0 JRNL AUTH V.A.KLENCHIN,A.CZYZ,I.Y.GORYSHIN,R.GRADMAN,S.LOVELL, JRNL AUTH 2 I.RAYMENT,W.S.REZNIKOFF JRNL TITL PHOSPHATE COORDINATION AND MOVEMENT OF DNA IN THE TN5 JRNL TITL 2 SYNAPTIC COMPLEX: ROLE OF THE (R)YREK MOTIF JRNL REF NUCLEIC ACIDS RES. V. 36 5855 2008 JRNL REFN ISSN 0305-1048 JRNL PMID 18790806 JRNL DOI 10.1093/NAR/GKN577 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3605 REMARK 3 NUCLEIC ACID ATOMS : 818 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 66.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 2.81000 REMARK 3 B12 (A**2) : -0.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4619 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6404 ; 1.529 ; 2.189 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.275 ;23.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;17.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;12.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3167 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2051 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3029 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2346 ; 2.498 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3639 ; 3.649 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2844 ; 3.504 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2763 ; 4.256 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 214 REMARK 3 RESIDUE RANGE : A 321 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7510 38.5910 -2.7160 REMARK 3 T TENSOR REMARK 3 T11: -0.2532 T22: 0.1321 REMARK 3 T33: -0.1389 T12: 0.1315 REMARK 3 T13: -0.0728 T23: -0.3738 REMARK 3 L TENSOR REMARK 3 L11: 2.0270 L22: 2.2463 REMARK 3 L33: 1.7763 L12: 1.0397 REMARK 3 L13: 0.2586 L23: 1.1293 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.4680 S13: -0.2545 REMARK 3 S21: -0.1938 S22: 0.3168 S23: -0.2359 REMARK 3 S31: 0.1000 S32: 0.3572 S33: -0.3777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9500 19.9770 1.4590 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: 0.0046 REMARK 3 T33: 0.1232 T12: 0.0223 REMARK 3 T13: -0.1758 T23: -0.2517 REMARK 3 L TENSOR REMARK 3 L11: 1.3929 L22: 1.7067 REMARK 3 L33: 5.0733 L12: 0.3449 REMARK 3 L13: 0.9645 L23: 1.4995 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.1716 S13: -0.3813 REMARK 3 S21: 0.1019 S22: -0.2157 S23: 0.2543 REMARK 3 S31: 0.5880 S32: -0.6757 S33: 0.2096 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 53.4960 21.4890 15.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.1695 REMARK 3 T33: 0.3564 T12: 0.3733 REMARK 3 T13: -0.2980 T23: -0.4931 REMARK 3 L TENSOR REMARK 3 L11: 6.0688 L22: 2.3718 REMARK 3 L33: 1.4717 L12: 0.9847 REMARK 3 L13: -0.4301 L23: -0.2402 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: 0.0127 S13: -0.8373 REMARK 3 S21: -0.1147 S22: 0.3936 S23: -0.8072 REMARK 3 S31: 0.7028 S32: 0.6330 S33: -0.3304 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 RESIDUE RANGE : B 11 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5230 27.5400 20.9770 REMARK 3 T TENSOR REMARK 3 T11: -0.0532 T22: -0.1804 REMARK 3 T33: -0.0699 T12: 0.1530 REMARK 3 T13: -0.2722 T23: -0.1778 REMARK 3 L TENSOR REMARK 3 L11: 2.3128 L22: 0.8102 REMARK 3 L33: 4.6999 L12: -0.4982 REMARK 3 L13: 0.5119 L23: -0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.2333 S12: 0.1020 S13: -0.3961 REMARK 3 S21: 0.0649 S22: 0.3132 S23: 0.0373 REMARK 3 S31: 0.3823 S32: 0.2600 S33: -0.5465 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 RESIDUE RANGE : C 11 C 20 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5760 15.8650 48.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.8605 T22: 0.1316 REMARK 3 T33: 0.2442 T12: 0.3749 REMARK 3 T13: -0.5385 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.4100 L22: 3.5914 REMARK 3 L33: 7.0177 L12: 0.3984 REMARK 3 L13: 0.3564 L23: -2.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.5260 S13: -0.5385 REMARK 3 S21: 1.3995 S22: 0.5951 S23: -0.0773 REMARK 3 S31: 0.5335 S32: 0.1341 S33: -0.6677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ECP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00964 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.40 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 69.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MUH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% (W/V) OME-PEG 5000, 0.1M BIS-TRIS, REMARK 280 0.1M AMMONIUM SULFATE, PH 6.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.51667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.25833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.38750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.12917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.64583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 152.51667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.25833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.12917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.38750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.64583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 56.75400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 98.30081 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.12917 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 373 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DT C 6 O HOH C 724 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 7 O3' DT B 7 C3' -0.038 REMARK 500 DT B 9 O3' DT B 9 C3' -0.054 REMARK 500 DC C 1 P DC C 1 OP3 -0.128 REMARK 500 DG C 3 O3' DG C 3 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DC B 3 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT B 4 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT B 4 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT B 4 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DA B 10 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 DT B 17 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA B 19 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 DA B 19 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG B 20 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG C 3 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 10 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DA C 10 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT C 11 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT C 19 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -57.71 -149.86 REMARK 500 ASP A 24 113.94 173.60 REMARK 500 GLU A 233 97.61 -59.62 REMARK 500 ASN A 276 46.53 38.19 REMARK 500 ASN A 288 76.94 46.32 REMARK 500 LYS A 291 -60.80 -23.30 REMARK 500 LYS A 297 107.33 -160.47 REMARK 500 VAL A 306 -8.04 -140.64 REMARK 500 LYS A 333 -90.57 -77.89 REMARK 500 ARG A 342 28.61 -143.14 REMARK 500 MET A 343 150.75 -47.35 REMARK 500 GLN A 391 -140.29 -127.40 REMARK 500 LYS A 410 122.24 -37.42 REMARK 500 ARG A 440 48.23 39.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MUH RELATED DB: PDB REMARK 900 RELATED ID: 1MUR RELATED DB: PDB REMARK 900 RELATED ID: 1MUS RELATED DB: PDB DBREF 3ECP A 1 476 UNP Q08JA5 Q08JA5_ECOLX 5 480 DBREF 3ECP B 1 20 PDB 3ECP 3ECP 1 20 DBREF 3ECP C 1 20 PDB 3ECP 3ECP 1 20 SEQADV 3ECP LYS A 54 UNP Q08JA5 GLU 58 ENGINEERED MUTATION SEQADV 3ECP ALA A 56 UNP Q08JA5 MET 60 ENGINEERED MUTATION SEQADV 3ECP PRO A 372 UNP Q08JA5 LEU 376 ENGINEERED MUTATION SEQADV 3ECP GLY A 477 UNP Q08JA5 CLONING ARTIFACT SEQRES 1 A 477 MET ILE THR SER ALA LEU HIS ARG ALA ALA ASP TRP ALA SEQRES 2 A 477 LYS SER VAL PHE SER SER ALA ALA LEU GLY ASP PRO ARG SEQRES 3 A 477 ARG THR ALA ARG LEU VAL ASN VAL ALA ALA GLN LEU ALA SEQRES 4 A 477 LYS TYR SER GLY LYS SER ILE THR ILE SER SER GLU GLY SEQRES 5 A 477 SER LYS ALA ALA GLN GLU GLY ALA TYR ARG PHE ILE ARG SEQRES 6 A 477 ASN PRO ASN VAL SER ALA GLU ALA ILE ARG LYS ALA GLY SEQRES 7 A 477 ALA MET GLN THR VAL LYS LEU ALA GLN GLU PHE PRO GLU SEQRES 8 A 477 LEU LEU ALA ILE GLU ASP THR THR SER LEU SER TYR ARG SEQRES 9 A 477 HIS GLN VAL ALA GLU GLU LEU GLY LYS LEU GLY SER ILE SEQRES 10 A 477 GLN ASP LYS SER ARG GLY TRP TRP VAL HIS SER VAL LEU SEQRES 11 A 477 LEU LEU GLU ALA THR THR PHE ARG THR VAL GLY LEU LEU SEQRES 12 A 477 HIS GLN GLU TRP TRP MET ARG PRO ASP ASP PRO ALA ASP SEQRES 13 A 477 ALA ASP GLU LYS GLU SER GLY LYS TRP LEU ALA ALA ALA SEQRES 14 A 477 ALA THR SER ARG LEU ARG MET GLY SER MET MET SER ASN SEQRES 15 A 477 VAL ILE ALA VAL CYS ASP ARG GLU ALA ASP ILE HIS ALA SEQRES 16 A 477 TYR LEU GLN ASP LYS LEU ALA HIS ASN GLU ARG PHE VAL SEQRES 17 A 477 VAL ARG SER LYS HIS PRO ARG LYS ASP VAL GLU SER GLY SEQRES 18 A 477 LEU TYR LEU TYR ASP HIS LEU LYS ASN GLN PRO GLU LEU SEQRES 19 A 477 GLY GLY TYR GLN ILE SER ILE PRO GLN LYS GLY VAL VAL SEQRES 20 A 477 ASP LYS ARG GLY LYS ARG LYS ASN ARG PRO ALA ARG LYS SEQRES 21 A 477 ALA SER LEU SER LEU ARG SER GLY ARG ILE THR LEU LYS SEQRES 22 A 477 GLN GLY ASN ILE THR LEU ASN ALA VAL LEU ALA GLU GLU SEQRES 23 A 477 ILE ASN PRO PRO LYS GLY GLU THR PRO LEU LYS TRP LEU SEQRES 24 A 477 LEU LEU THR SER GLU PRO VAL GLU SER LEU ALA GLN ALA SEQRES 25 A 477 LEU ARG VAL ILE ASP ILE TYR THR HIS ARG TRP ARG ILE SEQRES 26 A 477 GLU GLU PHE HIS LYS ALA TRP LYS THR GLY ALA GLY ALA SEQRES 27 A 477 GLU ARG GLN ARG MET GLU GLU PRO ASP ASN LEU GLU ARG SEQRES 28 A 477 MET VAL SER ILE LEU SER PHE VAL ALA VAL ARG LEU LEU SEQRES 29 A 477 GLN LEU ARG GLU SER PHE THR PRO PRO GLN ALA LEU ARG SEQRES 30 A 477 ALA GLN GLY LEU LEU LYS GLU ALA GLU HIS VAL GLU SER SEQRES 31 A 477 GLN SER ALA GLU THR VAL LEU THR PRO ASP GLU CYS GLN SEQRES 32 A 477 LEU LEU GLY TYR LEU ASP LYS GLY LYS ARG LYS ARG LYS SEQRES 33 A 477 GLU LYS ALA GLY SER LEU GLN TRP ALA TYR MET ALA ILE SEQRES 34 A 477 ALA ARG LEU GLY GLY PHE MET ASP SER LYS ARG THR GLY SEQRES 35 A 477 ILE ALA SER TRP GLY ALA LEU TRP GLU GLY TRP GLU ALA SEQRES 36 A 477 LEU GLN SER LYS LEU ASP GLY PHE LEU ALA ALA LYS ASP SEQRES 37 A 477 LEU MET ALA GLN GLY ILE LYS ILE GLY SEQRES 1 B 20 DG DA DC DT DT DG DT DG DT DA DT DA DA SEQRES 2 B 20 DG DA DG DT DC DA DG SEQRES 1 C 20 DC DT DG DA DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DA DG DT DC HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *120(H2 O) HELIX 1 1 ARG A 8 SER A 18 1 11 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ARG A 65 1 13 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 ASN A 204 1 12 HELIX 13 13 TYR A 223 ASN A 230 1 8 HELIX 14 14 LYS A 273 ASN A 276 5 4 HELIX 15 15 SER A 308 HIS A 321 1 14 HELIX 16 16 ARG A 322 LYS A 333 1 12 HELIX 17 17 GLY A 337 GLN A 341 5 5 HELIX 18 18 GLU A 345 SER A 369 1 25 HELIX 19 19 SER A 392 VAL A 396 5 5 HELIX 20 20 THR A 398 LYS A 410 1 13 HELIX 21 21 SER A 421 GLY A 433 1 13 HELIX 22 22 SER A 445 GLN A 472 1 28 SHEET 1 A 3 GLY A 112 LYS A 113 0 SHEET 2 A 3 ARG A 122 GLU A 133 -1 O GLY A 123 N GLY A 112 SHEET 3 A 3 THR A 139 TRP A 148 -1 O GLY A 141 N LEU A 131 SHEET 1 B 9 GLY A 112 LYS A 113 0 SHEET 2 B 9 ARG A 122 GLU A 133 -1 O GLY A 123 N GLY A 112 SHEET 3 B 9 LEU A 92 TYR A 103 -1 N ILE A 95 O LEU A 130 SHEET 4 B 9 VAL A 183 CYS A 187 1 O ILE A 184 N ALA A 94 SHEET 5 B 9 ARG A 206 ARG A 210 1 O ARG A 206 N ALA A 185 SHEET 6 B 9 LYS A 297 THR A 302 -1 O LEU A 301 N VAL A 209 SHEET 7 B 9 THR A 278 GLU A 286 -1 N VAL A 282 O LEU A 300 SHEET 8 B 9 ARG A 259 THR A 271 -1 N ILE A 270 O LEU A 279 SHEET 9 B 9 GLY A 235 ILE A 241 -1 N ILE A 241 O ARG A 259 SHEET 1 C 2 LYS A 244 VAL A 247 0 SHEET 2 C 2 ARG A 253 ARG A 256 -1 O LYS A 254 N VAL A 246 SITE 1 AC1 5 SER A 70 ALA A 71 GLU A 72 ASP A 347 SITE 2 AC1 5 HOH A 694 SITE 1 AC2 5 ARG A 104 ASP A 119 LYS A 120 SER A 121 SITE 2 AC2 5 HOH A 719 SITE 1 AC3 3 GLU A 146 GLU A 161 LYS A 164 CRYST1 113.508 113.508 228.775 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008810 0.005086 0.000000 0.00000 SCALE2 0.000000 0.010173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004371 0.00000