PDB Short entry for 3EDY
HEADER    HYDROLASE                               03-SEP-08   3EDY              
TITLE     CRYSTAL STRUCTURE OF THE PRECURSOR FORM OF HUMAN TRIPEPTIDYL-PEPTIDASE
TITLE    2 1                                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TRIPEPTIDYL-PEPTIDASE 1;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 20-563;                                           
COMPND   5 SYNONYM: TRIPEPTIDYL-PEPTIDASE I, TPP-1, TPP-I, TRIPEPTIDYL          
COMPND   6 AMINOPEPTIDASE, LYSOSOMAL PEPSTATIN- INSENSITIVE PROTEASE, LPIC, CELL
COMPND   7 GROWTH-INHIBITING GENE 1 PROTEIN;                                    
COMPND   8 EC: 3.4.14.9;                                                        
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: TPP1, CLN2;                                                    
SOURCE   6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS;                               
SOURCE   7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER;                           
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 10029;                                      
SOURCE   9 EXPRESSION_SYSTEM_CELL: OVARY CELLS                                  
KEYWDS    PROTEASE, TPP1, SEDOLISIN, BATTEN DISEASE, LINCL, ZYMOGEN, PRODOMAIN, 
KEYWDS   2 EXOPEPTIDASE, ENDOPEPTIDASE, S53 FAMILY, CLN2, CATALYTIC TRIAD,      
KEYWDS   3 OXYANION HOLE, DISEASE MUTATION, EPILEPSY, GLYCOPROTEIN, HYDROLASE,  
KEYWDS   4 LYSOSOME, NEURONAL CEROID LIPOFUSCINOSIS, SERINE PROTEASE            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.GUHANIYOGI,I.SOHAR,K.DAS,P.LOBEL,A.M.STOCK                          
REVDAT   5   29-JUL-20 3EDY    1       COMPND REMARK HETNAM LINK                
REVDAT   5 2                   1       SITE                                     
REVDAT   4   25-OCT-17 3EDY    1       REMARK                                   
REVDAT   3   13-JUL-11 3EDY    1       VERSN                                    
REVDAT   2   17-FEB-09 3EDY    1       VERSN  JRNL                              
REVDAT   1   18-NOV-08 3EDY    0                                                
JRNL        AUTH   J.GUHANIYOGI,I.SOHAR,K.DAS,A.M.STOCK,P.LOBEL                 
JRNL        TITL   CRYSTAL STRUCTURE AND AUTOACTIVATION PATHWAY OF THE          
JRNL        TITL 2 PRECURSOR FORM OF HUMAN TRIPEPTIDYL-PEPTIDASE 1, THE ENZYME  
JRNL        TITL 3 DEFICIENT IN LATE INFANTILE CEROID LIPOFUSCINOSIS            
JRNL        REF    J.BIOL.CHEM.                  V. 284  3985 2009              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   19038967                                                     
JRNL        DOI    10.1074/JBC.M806943200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.85 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC                                               
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.72                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 48127                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.179                           
REMARK   3   R VALUE            (WORKING SET) : 0.179                           
REMARK   3   FREE R VALUE                     : 0.205                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 2.600                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1231                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.85                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.90                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2319                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 65.70                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1930                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 48                           
REMARK   3   BIN FREE R VALUE                    : 0.2400                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4195                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 73                                      
REMARK   3   SOLVENT ATOMS            : 235                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : 37.00                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 26.88                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.03000                                             
REMARK   3    B22 (A**2) : 0.13000                                              
REMARK   3    B33 (A**2) : -0.10000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.134         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.120         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.082         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.220         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.961                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.953                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  4428 ; 0.011 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  2987 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  6046 ; 1.263 ; 1.966       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  7204 ; 1.038 ; 3.002       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   543 ; 7.328 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   200 ;36.405 ;23.300       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   638 ;13.894 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    30 ;15.069 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   656 ; 0.088 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4948 ; 0.012 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   912 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   910 ; 0.226 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  3163 ; 0.227 ; 0.200       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  2189 ; 0.191 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  2223 ; 0.106 ; 0.200       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   234 ; 0.146 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):     5 ; 0.135 ; 0.200       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    16 ; 0.188 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):    63 ; 0.291 ; 0.200       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    12 ; 0.109 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2788 ; 1.466 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1093 ; 0.462 ; 1.500       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  4395 ; 2.165 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1870 ; 3.351 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1651 ; 4.871 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 5                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A    20        A   183                          
REMARK   3    ORIGIN FOR THE GROUP (A):  66.2738 -13.0538   2.1520              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1090 T22:  -0.0184                                     
REMARK   3      T33:   0.0690 T12:   0.0046                                     
REMARK   3      T13:   0.0230 T23:   0.0418                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.5650 L22:   0.4290                                     
REMARK   3      L33:   2.4410 L12:   0.1373                                     
REMARK   3      L13:   0.3702 L23:   0.3489                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0294 S12:   0.0164 S13:  -0.1074                       
REMARK   3      S21:   0.0235 S22:  -0.0523 S23:  -0.0371                       
REMARK   3      S31:   0.3268 S32:  -0.0087 S33:   0.0229                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   184        A   197                          
REMARK   3    ORIGIN FOR THE GROUP (A):  62.6178  31.8842  -3.9333              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1573 T22:   0.0908                                     
REMARK   3      T33:   0.1681 T12:  -0.0775                                     
REMARK   3      T13:  -0.0203 T23:   0.0363                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   6.3336 L22:   6.8069                                     
REMARK   3      L33:   6.1013 L12:  -0.6618                                     
REMARK   3      L13:   0.4216 L23:  -6.4409                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0083 S12:  -0.2337 S13:   0.5860                       
REMARK   3      S21:   1.3167 S22:  -0.3865 S23:  -0.3336                       
REMARK   3      S31:  -0.9541 S32:   0.6932 S33:   0.3947                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   198        A   292                          
REMARK   3    ORIGIN FOR THE GROUP (A):  78.2416  15.3592   5.4954              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0480 T22:   0.0869                                     
REMARK   3      T33:   0.0993 T12:  -0.0017                                     
REMARK   3      T13:   0.0054 T23:   0.0342                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.4037 L22:   1.6964                                     
REMARK   3      L33:   1.5827 L12:   0.1583                                     
REMARK   3      L13:  -0.1315 L23:  -0.3295                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0123 S12:   0.0931 S13:  -0.0044                       
REMARK   3      S21:  -0.0877 S22:  -0.0353 S23:  -0.1322                       
REMARK   3      S31:   0.0029 S32:   0.1054 S33:   0.0230                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 4                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   293        A   401                          
REMARK   3    ORIGIN FOR THE GROUP (A):  63.3730   2.6706   8.3560              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0762 T22:   0.0683                                     
REMARK   3      T33:   0.0576 T12:   0.0004                                     
REMARK   3      T13:   0.0202 T23:   0.0432                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.5278 L22:   1.1679                                     
REMARK   3      L33:   1.0363 L12:  -0.1039                                     
REMARK   3      L13:   0.1647 L23:  -0.0415                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0340 S12:   0.0259 S13:   0.0340                       
REMARK   3      S21:  -0.0423 S22:  -0.0643 S23:  -0.0200                       
REMARK   3      S31:   0.0100 S32:  -0.0206 S33:   0.0303                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 5                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   402        A   563                          
REMARK   3    ORIGIN FOR THE GROUP (A):  60.1360  12.7024  16.8630              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0682 T22:   0.0989                                     
REMARK   3      T33:   0.0534 T12:   0.0086                                     
REMARK   3      T13:   0.0273 T23:   0.0171                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.8905 L22:   0.5261                                     
REMARK   3      L33:   0.3547 L12:   0.1013                                     
REMARK   3      L13:   0.0795 L23:  -0.0848                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0297 S12:  -0.1673 S13:   0.0512                       
REMARK   3      S21:   0.0851 S22:  -0.0316 S23:   0.0229                       
REMARK   3      S31:  -0.0269 S32:  -0.0671 S33:   0.0019                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3EDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000049202.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 02-OCT-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : NSLS                               
REMARK 200  BEAMLINE                       : X4C                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97908                            
REMARK 200  MONOCHROMATOR                  : HORIZONTALLY DEFLECTING AND        
REMARK 200                                   FOCUSING CRYSTAL PRECEDED BY A     
REMARK 200                                   VERTICALLY FOCUSING MIRROR         
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR SCANNER 345 MM PLATE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 50890                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.830                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.1                               
REMARK 200  DATA REDUNDANCY                : 7.000                              
REMARK 200  R MERGE                    (I) : 0.07900                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.90                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 93.1                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.45700                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.300                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL                         
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 48.85                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, CITRATE, PH 5.0, VAPOR         
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 278K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       29.90350            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       51.23950            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       46.58650            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       51.23950            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       29.90350            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       46.58650            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    HIS A 174      -55.50   -142.74                                   
REMARK 500    HIS A 197      112.85   -169.11                                   
REMARK 500    GLU A 232       70.70    -66.02                                   
REMARK 500    SER A 293       89.95   -167.01                                   
REMARK 500    SER A 294       61.61   -115.76                                   
REMARK 500    PRO A 295     -178.84    -55.99                                   
REMARK 500    HIS A 298       78.95   -151.58                                   
REMARK 500    ILE A 399       32.80    -93.99                                   
REMARK 500    THR A 400     -150.65    -79.17                                   
REMARK 500    VAL A 415      -53.19   -122.57                                   
REMARK 500    SER A 525     -156.62   -155.04                                   
REMARK 500    PRO A 544       32.09    -87.77                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 VAL A  190     THR A  191                  145.34                    
REMARK 500 PHE A  397     LEU A  398                 -146.56                    
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  3EDY A   20   563  UNP    O14773   TPP1_HUMAN      20    563             
SEQRES   1 A  544  SER TYR SER PRO GLU PRO ASP GLN ARG ARG THR LEU PRO          
SEQRES   2 A  544  PRO GLY TRP VAL SER LEU GLY ARG ALA ASP PRO GLU GLU          
SEQRES   3 A  544  GLU LEU SER LEU THR PHE ALA LEU ARG GLN GLN ASN VAL          
SEQRES   4 A  544  GLU ARG LEU SER GLU LEU VAL GLN ALA VAL SER ASP PRO          
SEQRES   5 A  544  SER SER PRO GLN TYR GLY LYS TYR LEU THR LEU GLU ASN          
SEQRES   6 A  544  VAL ALA ASP LEU VAL ARG PRO SER PRO LEU THR LEU HIS          
SEQRES   7 A  544  THR VAL GLN LYS TRP LEU LEU ALA ALA GLY ALA GLN LYS          
SEQRES   8 A  544  CYS HIS SER VAL ILE THR GLN ASP PHE LEU THR CYS TRP          
SEQRES   9 A  544  LEU SER ILE ARG GLN ALA GLU LEU LEU LEU PRO GLY ALA          
SEQRES  10 A  544  GLU PHE HIS HIS TYR VAL GLY GLY PRO THR GLU THR HIS          
SEQRES  11 A  544  VAL VAL ARG SER PRO HIS PRO TYR GLN LEU PRO GLN ALA          
SEQRES  12 A  544  LEU ALA PRO HIS VAL ASP PHE VAL GLY GLY LEU HIS ARG          
SEQRES  13 A  544  PHE PRO PRO THR SER SER LEU ARG GLN ARG PRO GLU PRO          
SEQRES  14 A  544  GLN VAL THR GLY THR VAL GLY LEU HIS LEU GLY VAL THR          
SEQRES  15 A  544  PRO SER VAL ILE ARG LYS ARG TYR ASN LEU THR SER GLN          
SEQRES  16 A  544  ASP VAL GLY SER GLY THR SER ASN ASN SER GLN ALA CYS          
SEQRES  17 A  544  ALA GLN PHE LEU GLU GLN TYR PHE HIS ASP SER ASP LEU          
SEQRES  18 A  544  ALA GLN PHE MET ARG LEU PHE GLY GLY ASN PHE ALA HIS          
SEQRES  19 A  544  GLN ALA SER VAL ALA ARG VAL VAL GLY GLN GLN GLY ARG          
SEQRES  20 A  544  GLY ARG ALA GLY ILE GLU ALA SER LEU ASP VAL GLN TYR          
SEQRES  21 A  544  LEU MET SER ALA GLY ALA ASN ILE SER THR TRP VAL TYR          
SEQRES  22 A  544  SER SER PRO GLY ARG HIS GLU GLY GLN GLU PRO PHE LEU          
SEQRES  23 A  544  GLN TRP LEU MET LEU LEU SER ASN GLU SER ALA LEU PRO          
SEQRES  24 A  544  HIS VAL HIS THR VAL SER TYR GLY ASP ASP GLU ASP SER          
SEQRES  25 A  544  LEU SER SER ALA TYR ILE GLN ARG VAL ASN THR GLU LEU          
SEQRES  26 A  544  MET LYS ALA ALA ALA ARG GLY LEU THR LEU LEU PHE ALA          
SEQRES  27 A  544  SER GLY ASP SER GLY ALA GLY CYS TRP SER VAL SER GLY          
SEQRES  28 A  544  ARG HIS GLN PHE ARG PRO THR PHE PRO ALA SER SER PRO          
SEQRES  29 A  544  TYR VAL THR THR VAL GLY GLY THR SER PHE GLN GLU PRO          
SEQRES  30 A  544  PHE LEU ILE THR ASN GLU ILE VAL ASP TYR ILE SER GLY          
SEQRES  31 A  544  GLY GLY PHE SER ASN VAL PHE PRO ARG PRO SER TYR GLN          
SEQRES  32 A  544  GLU GLU ALA VAL THR LYS PHE LEU SER SER SER PRO HIS          
SEQRES  33 A  544  LEU PRO PRO SER SER TYR PHE ASN ALA SER GLY ARG ALA          
SEQRES  34 A  544  TYR PRO ASP VAL ALA ALA LEU SER ASP GLY TYR TRP VAL          
SEQRES  35 A  544  VAL SER ASN ARG VAL PRO ILE PRO TRP VAL SER GLY THR          
SEQRES  36 A  544  SER ALA SER THR PRO VAL PHE GLY GLY ILE LEU SER LEU          
SEQRES  37 A  544  ILE ASN GLU HIS ARG ILE LEU SER GLY ARG PRO PRO LEU          
SEQRES  38 A  544  GLY PHE LEU ASN PRO ARG LEU TYR GLN GLN HIS GLY ALA          
SEQRES  39 A  544  GLY LEU PHE ASP VAL THR ARG GLY CYS HIS GLU SER CYS          
SEQRES  40 A  544  LEU ASP GLU GLU VAL GLU GLY GLN GLY PHE CYS SER GLY          
SEQRES  41 A  544  PRO GLY TRP ASP PRO VAL THR GLY TRP GLY THR PRO ASN          
SEQRES  42 A  544  PHE PRO ALA LEU LEU LYS THR LEU LEU ASN PRO                  
MODRES 3EDY ASN A  210  ASN  GLYCOSYLATION SITE                                 
MODRES 3EDY ASN A  286  ASN  GLYCOSYLATION SITE                                 
MODRES 3EDY ASN A  313  ASN  GLYCOSYLATION SITE                                 
MODRES 3EDY ASN A  443  ASN  GLYCOSYLATION SITE                                 
HET     CA  A   1       1                                                       
HET    NAG  A 564      14                                                       
HET    NAG  A 565      14                                                       
HET    NAG  A 566      14                                                       
HET    NAG  A 567      14                                                       
HET    EDO  A 701       4                                                       
HET    EDO  A 702       4                                                       
HET    EDO  A 703       4                                                       
HET    EDO  A 704       4                                                       
HETNAM      CA CALCIUM ION                                                      
HETNAM     NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE                         
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2   CA    CA 2+                                                        
FORMUL   3  NAG    4(C8 H15 N O6)                                               
FORMUL   7  EDO    4(C2 H6 O2)                                                  
FORMUL  11  HOH   *235(H2 O)                                                    
HELIX    1   1 ASN A   57  ASP A   70  1                                  14    
HELIX    2   2 THR A   81  ARG A   90  1                                  10    
HELIX    3   3 SER A   92  GLY A  107  1                                  16    
HELIX    4   4 ILE A  126  LEU A  133  1                                   8    
HELIX    5   5 PRO A  160  ALA A  164  5                                   5    
HELIX    6   6 THR A  201  TYR A  209  1                                   9    
HELIX    7   7 HIS A  236  GLY A  248  1                                  13    
HELIX    8   8 GLY A  270  GLY A  284  1                                  15    
HELIX    9   9 GLU A  302  SER A  312  1                                  11    
HELIX   10  10 ASP A  330  LEU A  332  5                                   3    
HELIX   11  11 SER A  333  ARG A  350  1                                  18    
HELIX   12  12 PRO A  419  TYR A  421  5                                   3    
HELIX   13  13 GLN A  422  SER A  433  1                                  12    
HELIX   14  14 PRO A  438  PHE A  442  5                                   5    
HELIX   15  15 GLY A  473  SER A  495  1                                  23    
HELIX   16  16 LEU A  503  GLN A  510  1                                   8    
HELIX   17  17 ASN A  552  THR A  559  1                                   8    
SHEET    1   A 3 TRP A  35  ARG A  40  0                                        
SHEET    2   A 3 HIS A 139  GLY A 143 -1  O  HIS A 140   N  LEU A  38           
SHEET    3   A 3 THR A 148  ARG A 152 -1  O  ARG A 152   N  HIS A 139           
SHEET    1   B 4 GLN A 109  SER A 113  0                                        
SHEET    2   B 4 PHE A 119  SER A 125 -1  O  TRP A 123   N  GLN A 109           
SHEET    3   B 4 GLU A  46  LEU A  53 -1  N  LEU A  47   O  LEU A 124           
SHEET    4   B 4 VAL A 167  VAL A 170 -1  O  ASP A 168   N  ALA A  52           
SHEET    1   C 7 ARG A 259  VAL A 261  0                                        
SHEET    2   C 7 SER A 288  TYR A 292  1  O  VAL A 291   N  VAL A 261           
SHEET    3   C 7 SER A 224  GLN A 229  1  N  GLN A 225   O  TRP A 290           
SHEET    4   C 7 VAL A 320  SER A 324  1  O  THR A 322   N  ALA A 226           
SHEET    5   C 7 THR A 353  ALA A 357  1  O  LEU A 355   N  VAL A 323           
SHEET    6   C 7 THR A 386  PHE A 393  1  O  VAL A 388   N  PHE A 356           
SHEET    7   C 7 GLU A 402  VAL A 404 -1  O  ILE A 403   N  SER A 392           
SHEET    1   D 7 ARG A 259  VAL A 261  0                                        
SHEET    2   D 7 SER A 288  TYR A 292  1  O  VAL A 291   N  VAL A 261           
SHEET    3   D 7 SER A 224  GLN A 229  1  N  GLN A 225   O  TRP A 290           
SHEET    4   D 7 VAL A 320  SER A 324  1  O  THR A 322   N  ALA A 226           
SHEET    5   D 7 THR A 353  ALA A 357  1  O  LEU A 355   N  VAL A 323           
SHEET    6   D 7 THR A 386  PHE A 393  1  O  VAL A 388   N  PHE A 356           
SHEET    7   D 7 VAL A 452  LEU A 455  1  O  VAL A 452   N  GLY A 389           
SHEET    1   E 2 ASP A 327  ASP A 328  0                                        
SHEET    2   E 2 THR A 377  PHE A 378 -1  O  PHE A 378   N  ASP A 327           
SHEET    1   F 2 TRP A 366  VAL A 368  0                                        
SHEET    2   F 2 ARG A 371  GLN A 373 -1  O  ARG A 371   N  VAL A 368           
SHEET    1   G 2 GLY A 411  PRO A 417  0                                        
SHEET    2   G 2 GLY A 446  TYR A 449 -1  O  ARG A 447   N  PHE A 416           
SHEET    1   H 2 TYR A 459  SER A 463  0                                        
SHEET    2   H 2 VAL A 466  VAL A 471 -1  O  ILE A 468   N  VAL A 461           
SHEET    1   I 2 LEU A 515  PHE A 516  0                                        
SHEET    2   I 2 THR A 550  PRO A 551 -1  O  THR A 550   N  PHE A 516           
SHEET    1   J 2 CYS A 522  GLU A 524  0                                        
SHEET    2   J 2 GLN A 534  CYS A 537 -1  O  GLY A 535   N  HIS A 523           
SSBOND   1 CYS A  111    CYS A  122                          1555   1555  2.07  
SSBOND   2 CYS A  365    CYS A  526                          1555   1555  2.09  
SSBOND   3 CYS A  522    CYS A  537                          1555   1555  2.07  
LINK         ND2 ASN A 210                 C1  NAG A 564     1555   1555  1.60  
LINK         ND2 ASN A 286                 C1  NAG A 565     1555   1555  1.44  
LINK         ND2 ASN A 313                 C1  NAG A 566     1555   1555  1.55  
LINK         ND2 ASN A 443                 C1  NAG A 567     1555   1555  1.46  
CISPEP   1 PHE A  378    PRO A  379          0         8.61                     
CISPEP   2 TYR A  449    PRO A  450          0        24.78                     
CISPEP   3 ASN A  562    PRO A  563          0         0.77                     
CRYST1   59.807   93.173  102.479  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.016720  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010733  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009758        0.00000