PDB Short entry for 3EU9 HEADER PROTEIN BINDING, METHYL-LYSINE-BINDING P09-OCT-08 3EU9 TITLE THE ANKYRIN REPEAT DOMAIN OF HUNTINGTIN INTERACTING PROTEIN 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUNTINGTIN-INTERACTING PROTEIN 14; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: ANKYRIN REPEATS; COMPND 5 SYNONYM: HIP14, PALMITOYLTRANSFERASE ZDHHC17, ZINC FINGER DHHC COMPND 6 DOMAIN-CONTAINING PROTEIN 17, DHHC-17, HUNTINGTIN-INTERACTING PROTEIN COMPND 7 3, HUNTINGTIN-INTERACTING PROTEIN H, HUNTINGTIN YEAST PARTNER H, COMPND 8 PUTATIVE NF-KAPPA-B-ACTIVATING PROTEIN 205, PUTATIVE MAPK-ACTIVATING COMPND 9 PROTEIN PM11; COMPND 10 EC: 2.3.1.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZDHHC17, HIP14, HIP3, HYPH, KIAA0946, HSPC294; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC650 KEYWDS EPIGENETICS; ANKYRIN REPEATS; METHYLLYINE BINDING; HUNTINGTIN KEYWDS 2 INTERACTING PROTEIN 14, ACYLTRANSFERASE, ANK REPEAT, CYTOPLASMIC KEYWDS 3 VESICLE, GOLGI APPARATUS, MEMBRANE, METAL-BINDING, ONCOGENE, KEYWDS 4 PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, ZINC-FINGER, PROTEIN KEYWDS 5 BINDING, METHYL-LYSINE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.GAO,R.E.COLLINS,J.R.HORTON,R.ZHANG,X.ZHANG,X.CHENG REVDAT 4 27-DEC-23 3EU9 1 REMARK REVDAT 3 13-JUL-11 3EU9 1 VERSN REVDAT 2 21-JUL-09 3EU9 1 JRNL REVDAT 1 23-JUN-09 3EU9 0 JRNL AUTH T.GAO,R.E.COLLINS,J.R.HORTON,X.ZHANG,R.ZHANG,A.DHAYALAN, JRNL AUTH 2 R.TAMAS,A.JELTSCH,X.CHENG JRNL TITL THE ANKYRIN REPEAT DOMAIN OF HUNTINGTIN INTERACTING PROTEIN JRNL TITL 2 14 CONTAINS A SURFACE AROMATIC CAGE, A POTENTIAL SITE FOR JRNL TITL 3 METHYL-LYSINE BINDING. JRNL REF PROTEINS V. 76 772 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19434754 JRNL DOI 10.1002/PROT.22452 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 553241.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 58266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2937 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4980 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19700 REMARK 3 B22 (A**2) : 0.19700 REMARK 3 B33 (A**2) : -0.39500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 34.3 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL ANISOTROPIC B VALUE REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.928 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.521 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.349 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.019 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 61.88 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM (NH4)2SO4, 25% POLYETHYLENE REMARK 280 GLYCOL (PEG) 3350, 0.1M BIS-TRIS, PH 5.5. , VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.17667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 170.35333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 127.76500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 212.94167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.58833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.17667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 170.35333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 212.94167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.76500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.58833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT CONTAINS THREE MONOMER REMARK 300 MOLECULES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.58833 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 347 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 49 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 LYS A 284 REMARK 465 GLY A 285 REMARK 465 TYR A 286 REMARK 465 ASP A 287 REMARK 465 ASN A 288 REMARK 465 HIS B 49 REMARK 465 MET B 50 REMARK 465 THR B 51 REMARK 465 HIS B 52 REMARK 465 ALA B 280 REMARK 465 ARG B 281 REMARK 465 GLN B 282 REMARK 465 ALA B 283 REMARK 465 LYS B 284 REMARK 465 GLY B 285 REMARK 465 TYR B 286 REMARK 465 ASP B 287 REMARK 465 ASN B 288 REMARK 465 HIS C 49 REMARK 465 MET C 50 REMARK 465 THR C 51 REMARK 465 HIS C 52 REMARK 465 ILE C 53 REMARK 465 ASP C 54 REMARK 465 ASP C 55 REMARK 465 TYR C 56 REMARK 465 SER C 57 REMARK 465 THR C 58 REMARK 465 GLY C 285 REMARK 465 TYR C 286 REMARK 465 ASP C 287 REMARK 465 ASN C 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 50 CG SD CE REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 ASN A 214 CG OD1 ND2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 271 CG1 CG2 REMARK 470 TRP A 272 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 272 CZ3 CH2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 VAL B 183 CG1 CG2 REMARK 470 LEU B 219 CG CD1 CD2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 TYR B 223 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS B 224 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 VAL B 251 CG1 CG2 REMARK 470 GLN B 254 CG CD OE1 NE2 REMARK 470 ASN B 255 CG OD1 ND2 REMARK 470 ILE B 256 CG1 CG2 CD1 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 SER B 260 OG REMARK 470 LEU B 262 CG CD1 CD2 REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLN B 267 CG CD OE1 NE2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 VAL B 271 CG1 CG2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 470 GLU C 75 CG CD OE1 OE2 REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 GLU C 246 CG CD OE1 OE2 REMARK 470 LYS C 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -8.30 -55.46 REMARK 500 ASP A 117 31.86 -99.14 REMARK 500 ASP B 54 40.33 -95.02 REMARK 500 ASP B 55 76.86 80.34 REMARK 500 ASN B 90 35.81 72.94 REMARK 500 ASN B 124 72.00 45.58 REMARK 500 GLN B 181 137.22 -38.41 REMARK 500 GLN B 188 7.33 -64.75 REMARK 500 PHE B 213 29.06 -79.96 REMARK 500 ASN B 214 65.63 38.58 REMARK 500 LYS B 222 -79.03 -75.43 REMARK 500 TYR B 223 -77.55 -41.37 REMARK 500 ILE B 256 16.15 -69.57 REMARK 500 SER B 260 51.84 -110.00 REMARK 500 ALA B 261 -80.18 58.47 REMARK 500 ASN C 124 68.24 36.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HIS A 322 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B95 RELATED DB: PDB REMARK 900 THE ANKYRIN REPEATS OF G9A-LIKE PROTEIN (GLP) DBREF 3EU9 A 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 DBREF 3EU9 B 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 DBREF 3EU9 C 51 288 UNP Q8IUH5 ZDH17_HUMAN 51 288 SEQADV 3EU9 HIS A 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET A 50 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 HIS B 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET B 50 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 HIS C 49 UNP Q8IUH5 EXPRESSION TAG SEQADV 3EU9 MET C 50 UNP Q8IUH5 EXPRESSION TAG SEQRES 1 A 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 A 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 A 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 A 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 A 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 A 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 A 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 A 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 A 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 A 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 A 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 A 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 A 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 A 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 A 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 A 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 A 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 A 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 A 240 ALA LYS GLY TYR ASP ASN SEQRES 1 B 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 B 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 B 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 B 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 B 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 B 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 B 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 B 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 B 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 B 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 B 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 B 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 B 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 B 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 B 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 B 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 B 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 B 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 B 240 ALA LYS GLY TYR ASP ASN SEQRES 1 C 240 HIS MET THR HIS ILE ASP ASP TYR SER THR TRP ASP ILE SEQRES 2 C 240 VAL LYS ALA THR GLN TYR GLY ILE TYR GLU ARG CYS ARG SEQRES 3 C 240 GLU LEU VAL GLU ALA GLY TYR ASP VAL ARG GLN PRO ASP SEQRES 4 C 240 LYS GLU ASN VAL THR LEU LEU HIS TRP ALA ALA ILE ASN SEQRES 5 C 240 ASN ARG ILE ASP LEU VAL LYS TYR TYR ILE SER LYS GLY SEQRES 6 C 240 ALA ILE VAL ASP GLN LEU GLY GLY ASP LEU ASN SER THR SEQRES 7 C 240 PRO LEU HIS TRP ALA THR ARG GLN GLY HIS LEU SER MET SEQRES 8 C 240 VAL VAL GLN LEU MET LYS TYR GLY ALA ASP PRO SER LEU SEQRES 9 C 240 ILE ASP GLY GLU GLY CYS SER CYS ILE HIS LEU ALA ALA SEQRES 10 C 240 GLN PHE GLY HIS THR SER ILE VAL ALA TYR LEU ILE ALA SEQRES 11 C 240 LYS GLY GLN ASP VAL ASP MET MET ASP GLN ASN GLY MET SEQRES 12 C 240 THR PRO LEU MET TRP ALA ALA TYR ARG THR HIS SER VAL SEQRES 13 C 240 ASP PRO THR ARG LEU LEU LEU THR PHE ASN VAL SER VAL SEQRES 14 C 240 ASN LEU GLY ASP LYS TYR HIS LYS ASN THR ALA LEU HIS SEQRES 15 C 240 TRP ALA VAL LEU ALA GLY ASN THR THR VAL ILE SER LEU SEQRES 16 C 240 LEU LEU GLU ALA GLY ALA ASN VAL ASP ALA GLN ASN ILE SEQRES 17 C 240 LYS GLY GLU SER ALA LEU ASP LEU ALA LYS GLN ARG LYS SEQRES 18 C 240 ASN VAL TRP MET ILE ASN HIS LEU GLN GLU ALA ARG GLN SEQRES 19 C 240 ALA LYS GLY TYR ASP ASN HET HIS A 322 10 HET SO4 A 323 5 HET SO4 A 324 5 HET SO4 A 325 5 HET SO4 B 322 5 HET SO4 B 323 5 HET GOL C 449 6 HET GOL C 450 6 HET SO4 C 451 5 HET SO4 C 452 5 HETNAM HIS HISTIDINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 HIS C6 H10 N3 O2 1+ FORMUL 5 SO4 7(O4 S 2-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 14 HOH *342(H2 O) HELIX 1 1 ASP A 55 TRP A 59 5 5 HELIX 2 2 ASP A 60 TYR A 67 1 8 HELIX 3 3 ILE A 69 ALA A 79 1 11 HELIX 4 4 THR A 92 ASN A 100 1 9 HELIX 5 5 ARG A 102 LYS A 112 1 11 HELIX 6 6 THR A 126 GLY A 135 1 10 HELIX 7 7 HIS A 136 TYR A 146 1 11 HELIX 8 8 SER A 159 PHE A 167 1 9 HELIX 9 9 HIS A 169 LYS A 179 1 11 HELIX 10 10 THR A 192 THR A 201 1 10 HELIX 11 11 PRO A 206 PHE A 213 1 8 HELIX 12 12 THR A 227 GLY A 236 1 10 HELIX 13 13 ASN A 237 GLY A 248 1 12 HELIX 14 14 SER A 260 ARG A 268 1 9 HELIX 15 15 ASN A 270 ARG A 281 1 12 HELIX 16 16 ASP B 55 TRP B 59 5 5 HELIX 17 17 ASP B 60 TYR B 67 1 8 HELIX 18 18 ILE B 69 ALA B 79 1 11 HELIX 19 19 THR B 92 ASN B 100 1 9 HELIX 20 20 ARG B 102 LYS B 112 1 11 HELIX 21 21 THR B 126 GLY B 135 1 10 HELIX 22 22 HIS B 136 LYS B 145 1 10 HELIX 23 23 SER B 159 PHE B 167 1 9 HELIX 24 24 HIS B 169 GLY B 180 1 12 HELIX 25 25 THR B 192 THR B 201 1 10 HELIX 26 26 PRO B 206 PHE B 213 1 8 HELIX 27 27 THR B 227 ALA B 235 1 9 HELIX 28 28 ASN B 237 ALA B 247 1 11 HELIX 29 29 ALA B 261 LYS B 269 1 9 HELIX 30 30 ASN B 270 GLU B 279 1 10 HELIX 31 31 ASP C 60 TYR C 67 1 8 HELIX 32 32 ILE C 69 ALA C 79 1 11 HELIX 33 33 THR C 92 ASN C 100 1 9 HELIX 34 34 ARG C 102 LYS C 112 1 11 HELIX 35 35 THR C 126 GLY C 135 1 10 HELIX 36 36 HIS C 136 TYR C 146 1 11 HELIX 37 37 SER C 159 PHE C 167 1 9 HELIX 38 38 HIS C 169 LYS C 179 1 11 HELIX 39 39 THR C 192 THR C 201 1 10 HELIX 40 40 PRO C 206 PHE C 213 1 8 HELIX 41 41 THR C 227 ALA C 235 1 9 HELIX 42 42 ASN C 237 ALA C 247 1 11 HELIX 43 43 SER C 260 LYS C 269 1 10 HELIX 44 44 ASN C 270 LYS C 284 1 15 CISPEP 1 ASP A 205 PRO A 206 0 0.25 CISPEP 2 ASP B 205 PRO B 206 0 0.18 CISPEP 3 ASP C 205 PRO C 206 0 0.31 SITE 1 AC1 6 ASN A 189 HIS A 224 HIS C 224 LEU C 234 SITE 2 AC1 6 HOH C 491 HOH C 493 SITE 1 AC2 8 HIS B 202 GLY B 236 ASN B 237 THR B 238 SITE 2 AC2 8 THR B 239 HOH B 376 ARG C 281 HOH C 541 SITE 1 AC3 3 HIS A 276 ARG B 72 LEU B 76 SITE 1 AC4 1 ARG C 133 SITE 1 AC5 5 HOH A 410 VAL C 215 SER C 216 VAL C 217 SITE 2 AC5 5 ASN C 218 SITE 1 AC6 7 SO4 A 325 GLY C 168 THR C 170 SER C 171 SITE 2 AC6 7 HOH C 464 HOH C 494 HOH C 534 SITE 1 AC7 3 ARG C 268 ASN C 270 MET C 273 SITE 1 AC8 5 MET A 50 THR A 51 HOH A 388 TYR B 67 SITE 2 AC8 5 HIS C 276 SITE 1 AC9 4 ARG A 208 ASN C 101 HIS C 136 HOH C 480 SITE 1 BC1 8 HIS A 169 THR A 170 SER A 171 HOH A 414 SITE 2 BC1 8 HOH A 433 HOH A 449 HOH A 450 SO4 C 451 CRYST1 106.660 106.660 255.530 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009376 0.005413 0.000000 0.00000 SCALE2 0.000000 0.010826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003913 0.00000