PDB Short entry for 3EZE HEADER TRANSFERASE 04-NOV-98 3EZE TITLE COMPLEX OF THE AMINO TERMINAL DOMAIN OF ENZYME I AND THE HISTIDINE- TITLE 2 CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, TITLE 3 RESTRAINED REGULARIZED MEAN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PHOSPHOTRANSFERASE SYSTEM, ENZYME I); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN RESIDUES 1 - 259; COMPND 5 EC: 2.7.3.9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN (PHOSPHOTRANSFERASE SYSTEM, HPR); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: GI698; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLP2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 STRAIN: GI698; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PSP100 KEYWDS PHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT EXPDTA SOLUTION NMR AUTHOR G.M.CLORE,D.S.GARRETT,A.M.GRONENBORN REVDAT 5 27-DEC-23 3EZE 1 REMARK REVDAT 4 16-MAR-22 3EZE 1 REMARK REVDAT 3 24-FEB-09 3EZE 1 VERSN REVDAT 2 29-DEC-99 3EZE 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 16-DEC-98 3EZE 0 JRNL AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,A.M.GRONENBORN,G.M.CLORE JRNL TITL SOLUTION STRUCTURE OF THE 40,000 MR PHOSPHORYL TRANSFER JRNL TITL 2 COMPLEX BETWEEN THE N-TERMINAL DOMAIN OF ENZYME I AND HPR. JRNL REF NAT.STRUCT.BIOL. V. 6 166 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10048929 JRNL DOI 10.1038/5854 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,G.M.CLORE,A.M.GRONENBORN REMARK 1 TITL TAUTOMERIC STATE AND PKA OF THE PHOSPHORYLATED ACTIVE SITE REMARK 1 TITL 2 HISTIDINE IN THE N-TERMINAL DOMAIN OF ENZYME I OF THE REMARK 1 TITL 3 ESCHERICHIA COLI PHOSPHOENOLPYRUVATE: SUGAR REMARK 1 TITL 4 PHOSPHOTRANSFERASE SYSTEM REMARK 1 REF PROTEIN SCI. V. 7 789 1998 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,D.I.LIAO,A.PETERKOFSKY,A.M.GRONENBORN, REMARK 1 AUTH 2 G.M.CLORE REMARK 1 TITL SOLUTION STRUCTURE OF THE 30 KDA N-TERMINAL DOMAIN OF ENZYME REMARK 1 TITL 2 I OF THE ESCHERICHIA COLI PHOSPHOENOLPYRUVATE:SUGAR REMARK 1 TITL 3 PHOSPHOTRANSFERASE SYSTEM BY MULTIDIMENSIONAL NMR REMARK 1 REF BIOCHEMISTRY V. 36 2517 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,G.M.CLORE,A.M.GRONENBORN REMARK 1 TITL IDENTIFICATION BY NMR OF THE BINDING SURFACE FOR THE REMARK 1 TITL 2 HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR ON THE REMARK 1 TITL 3 N-TERMINAL DOMAIN OF ENZYME I OF THE ESCHERICHIA COLI REMARK 1 TITL 4 PHOSPHOTRANSFERASE SYSTEM REMARK 1 REF BIOCHEMISTRY V. 36 4393 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING REMARK 3 PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE REMARK 3 PROGRAM CNS MODIFIED TO INCORPORATE COUPLING CONSTANT RESTRAINTS REMARK 3 (GARRETT ET AL. (1984) J. MAGN. RESON. SERIES B 104, 99-103), REMARK 3 CARBON CHEMICAL SHIFT RESTRAINTS, (KUSZEWSKI ET AL. (1995) J. REMARK 3 MAGN. RESON. SERIES B 106, 92-96) RESTRAINTS, AND RESIDUAL DIPOLAR REMARK 3 COUPLING RESTRAINTS (CLORE ET AL. J. MAGN. RESON 131, 159-162 REMARK 3 (1998); J. MAGN 133, 216-221 (1998)). REMARK 3 REMARK 3 IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE RMS REMARK 3 DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING REMARK 3 STRUCTURES AND THE MEAN COORDINATE POSITIONS. THE LAST REMARK 3 COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. BEST REMARK 3 FITTING TO GENERATE THE AVERAGE STRUCTURE IS WITH RESPECT REMARK 3 TO RESIDUES 1 - 250 REMARK 3 (RESIDUES 251 - 259 ARE DISORDERED IN SOLUTION) OF ENZYME I REMARK 3 AND RESIDUES 301-385 OF HPR. RESIDUES 251-259 ARE OMITTED REMARK 3 FROM THE MEAN STRUCTURE REMARK 4 REMARK 4 3EZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000219. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.00 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX500; DMX600; DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS (SEE ABOVE) REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE 3D STRUCTURE OF THE EIN-HPR COMPLEX WAS SOLVED BY REMARK 210 MULTI HETERONUCLEAR NMR AND IS BASED ON 5475 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 LYS A 250 REMARK 465 ALA A 251 REMARK 465 GLU A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 LYS A 255 REMARK 465 LEU A 256 REMARK 465 LYS A 257 REMARK 465 ASP A 258 REMARK 465 ARG A 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 350 H LEU B 353 1.44 REMARK 500 O ALA A 91 H ASP A 95 1.55 REMARK 500 OG SER A 188 HG1 THR A 190 1.56 REMARK 500 O PRO B 318 H PHE B 322 1.59 REMARK 500 NE2 HIS A 189 P PO3 B 600 2.08 REMARK 500 ND1 HIS B 315 P PO3 B 600 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 102.07 52.45 REMARK 500 LYS A 49 -74.90 -64.62 REMARK 500 ALA A 50 -36.86 -38.57 REMARK 500 ASP A 148 96.34 69.03 REMARK 500 PRO A 165 -34.57 -39.25 REMARK 500 GLN A 170 37.66 -92.92 REMARK 500 ALA A 183 -160.40 -58.00 REMARK 500 SER A 207 32.09 -155.50 REMARK 500 ASP A 215 6.99 80.65 REMARK 500 ALA A 222 15.64 47.20 REMARK 500 VAL A 223 -43.41 -131.83 REMARK 500 ASN B 338 70.80 41.64 REMARK 500 GLN B 351 -21.02 -37.68 REMARK 500 ALA B 373 -77.68 -45.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EZA RELATED DB: PDB REMARK 900 RELATED ID: 3EZB RELATED DB: PDB DBREF 3EZE A 1 259 UNP P08839 PT1_ECOLI 1 259 DBREF 3EZE B 301 385 UNP P0AA04 PTHP_ECOLI 1 85 SEQRES 1 A 259 MET ILE SER GLY ILE LEU ALA SER PRO GLY ILE ALA PHE SEQRES 2 A 259 GLY LYS ALA LEU LEU LEU LYS GLU ASP GLU ILE VAL ILE SEQRES 3 A 259 ASP ARG LYS LYS ILE SER ALA ASP GLN VAL ASP GLN GLU SEQRES 4 A 259 VAL GLU ARG PHE LEU SER GLY ARG ALA LYS ALA SER ALA SEQRES 5 A 259 GLN LEU GLU THR ILE LYS THR LYS ALA GLY GLU THR PHE SEQRES 6 A 259 GLY GLU GLU LYS GLU ALA ILE PHE GLU GLY HIS ILE MET SEQRES 7 A 259 LEU LEU GLU ASP GLU GLU LEU GLU GLN GLU ILE ILE ALA SEQRES 8 A 259 LEU ILE LYS ASP LYS HIS MET THR ALA ASP ALA ALA ALA SEQRES 9 A 259 HIS GLU VAL ILE GLU GLY GLN ALA SER ALA LEU GLU GLU SEQRES 10 A 259 LEU ASP ASP GLU TYR LEU LYS GLU ARG ALA ALA ASP VAL SEQRES 11 A 259 ARG ASP ILE GLY LYS ARG LEU LEU ARG ASN ILE LEU GLY SEQRES 12 A 259 LEU LYS ILE ILE ASP LEU SER ALA ILE GLN ASP GLU VAL SEQRES 13 A 259 ILE LEU VAL ALA ALA ASP LEU THR PRO SER GLU THR ALA SEQRES 14 A 259 GLN LEU ASN LEU LYS LYS VAL LEU GLY PHE ILE THR ASP SEQRES 15 A 259 ALA GLY GLY ARG THR SER HIS THR SER ILE MET ALA ARG SEQRES 16 A 259 SER LEU GLU LEU PRO ALA ILE VAL GLY THR GLY SER VAL SEQRES 17 A 259 THR SER GLN VAL LYS ASN ASP ASP TYR LEU ILE LEU ASP SEQRES 18 A 259 ALA VAL ASN ASN GLN VAL TYR VAL ASN PRO THR ASN GLU SEQRES 19 A 259 VAL ILE ASP LYS MET ARG ALA VAL GLN GLU GLN VAL ALA SEQRES 20 A 259 SER GLU LYS ALA GLU LEU ALA LYS LEU LYS ASP ARG SEQRES 1 B 85 MET PHE GLN GLN GLU VAL THR ILE THR ALA PRO ASN GLY SEQRES 2 B 85 LEU HIS THR ARG PRO ALA ALA GLN PHE VAL LYS GLU ALA SEQRES 3 B 85 LYS GLY PHE THR SER GLU ILE THR VAL THR SER ASN GLY SEQRES 4 B 85 LYS SER ALA SER ALA LYS SER LEU PHE LYS LEU GLN THR SEQRES 5 B 85 LEU GLY LEU THR GLN GLY THR VAL VAL THR ILE SER ALA SEQRES 6 B 85 GLU GLY GLU ASP GLU GLN LYS ALA VAL GLU HIS LEU VAL SEQRES 7 B 85 LYS LEU MET ALA GLU LEU GLU HET PO3 B 600 4 HETNAM PO3 PHOSPHITE ION FORMUL 3 PO3 O3 P 3- HELIX 1 1 ALA A 33 THR A 64 1 32 HELIX 2 2 GLU A 67 LEU A 80 1 14 HELIX 3 3 GLU A 83 LYS A 96 1 14 HELIX 4 4 ALA A 100 GLU A 116 1 17 HELIX 5 5 GLU A 121 LEU A 142 1 22 HELIX 6 6 LEU A 149 ALA A 151 5 3 HELIX 7 7 PRO A 165 ALA A 169 1 5 HELIX 8 8 HIS A 189 LEU A 197 1 9 HELIX 9 9 VAL A 208 GLN A 211 1 4 HELIX 10 10 ASN A 233 SER A 248 1 16 HELIX 11 11 THR B 316 GLY B 328 1 13 HELIX 12 12 LEU B 347 THR B 352 1 6 HELIX 13 13 GLU B 370 GLU B 383 1 14 SHEET 1 A 5 PHE A 179 THR A 181 0 SHEET 2 A 5 ILE A 157 ALA A 160 1 N LEU A 158 O ILE A 180 SHEET 3 A 5 ALA A 12 LEU A 18 1 N LEU A 17 O ILE A 157 SHEET 4 A 5 ASP A 216 LEU A 220 -1 N LEU A 220 O ALA A 12 SHEET 5 A 5 VAL A 227 VAL A 229 -1 N TYR A 228 O ILE A 219 SHEET 1 B 4 PHE B 302 THR B 307 0 SHEET 2 B 4 VAL B 360 GLU B 366 -1 N ALA B 365 O PHE B 302 SHEET 3 B 4 GLU B 332 SER B 337 -1 N THR B 336 O THR B 362 SHEET 4 B 4 LYS B 340 SER B 343 -1 N ALA B 342 O VAL B 335 SITE 1 AC1 3 HIS A 189 HIS B 315 THR B 316 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000