PDB Short entry for 3F1N HEADER TRANSCRIPTION 28-OCT-08 3F1N TITLE CRYSTAL STRUCTURE OF A HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND TITLE 2 ARNT C-TERMINAL PAS DOMAINS, WITH INTERNALLY BOUND ETHYLENE GLYCOL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HIF2 ALPHA C-TERMINAL PAS DOMAIN; COMPND 5 SYNONYM: EPAS-1, MEMBER OF PAS PROTEIN 2, BASIC-HELIX-LOOP-HELIX-PAS COMPND 6 PROTEIN MOP2, HYPOXIA-INDUCIBLE FACTOR 2 ALPHA, HIF-2 ALPHA, HIF2 COMPND 7 ALPHA, HIF-1 ALPHA-LIKE FACTOR, HLF; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: ARNT C-TERMINAL PAS DOMAIN; COMPND 14 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, COMPND 15 HYPOXIA-INDUCIBLE FACTOR 1 BETA, HIF-1 BETA; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPAS1, HIF2A, HYPOXIA-INDUCIBLE FACTOR 2 ALPHA, MOP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PHIS-GB1-PARALLEL; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ARNT, ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PHIS-PARALLEL KEYWDS PAS DOMAIN, HETERODIMER, INTERNAL CAVITY, ACTIVATOR, ANGIOGENESIS, KEYWDS 2 CONGENITAL ERYTHROCYTOSIS, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 3 DISEASE MUTATION, DNA-BINDING, HYDROXYLATION, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ALTERNATIVE SPLICING, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR T.H.SCHEUERMANN,D.R.TOMCHICK,M.MACHIUS,Y.GUO,R.K.BRUICK,K.H.GARDNER REVDAT 6 06-SEP-23 3F1N 1 REMARK REVDAT 5 20-OCT-21 3F1N 1 REMARK SEQADV REVDAT 4 25-OCT-17 3F1N 1 REMARK REVDAT 3 17-MAR-09 3F1N 1 AUTHOR REVDAT 2 17-FEB-09 3F1N 1 JRNL REVDAT 1 20-JAN-09 3F1N 0 JRNL AUTH T.H.SCHEUERMANN,D.R.TOMCHICK,M.MACHIUS,Y.GUO,R.K.BRUICK, JRNL AUTH 2 K.H.GARDNER JRNL TITL ARTIFICIAL LIGAND BINDING WITHIN THE HIF2ALPHA PAS-B DOMAIN JRNL TITL 2 OF THE HIF2 TRANSCRIPTION FACTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 450 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19129502 JRNL DOI 10.1073/PNAS.0808092106 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 39277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9787 - 3.5619 0.99 2720 147 0.1799 0.1936 REMARK 3 2 3.5619 - 2.8278 1.00 2702 151 0.1626 0.1897 REMARK 3 3 2.8278 - 2.4705 1.00 2697 154 0.1638 0.2013 REMARK 3 4 2.4705 - 2.2447 1.00 2696 134 0.1660 0.1830 REMARK 3 5 2.2447 - 2.0838 1.00 2695 137 0.1576 0.1818 REMARK 3 6 2.0838 - 1.9610 1.00 2668 150 0.1549 0.1886 REMARK 3 7 1.9610 - 1.8628 1.00 2684 166 0.1573 0.1904 REMARK 3 8 1.8628 - 1.7817 1.00 2667 137 0.1639 0.2165 REMARK 3 9 1.7817 - 1.7131 1.00 2709 129 0.1616 0.2133 REMARK 3 10 1.7131 - 1.6540 1.00 2693 127 0.1688 0.2057 REMARK 3 11 1.6540 - 1.6023 1.00 2693 133 0.1802 0.2171 REMARK 3 12 1.6023 - 1.5565 0.99 2692 147 0.1913 0.2144 REMARK 3 13 1.5565 - 1.5155 0.96 2597 139 0.2095 0.2500 REMARK 3 14 1.5155 - 1.4786 0.89 2392 121 0.2358 0.3062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 50.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.44380 REMARK 3 B22 (A**2) : -2.09500 REMARK 3 B33 (A**2) : -2.34880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.89030 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 15.348 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.0853 -43.2951 9.6691 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1330 REMARK 3 T33: 0.1240 T12: -0.0236 REMARK 3 T13: -0.0028 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: -0.0952 L22: 3.1326 REMARK 3 L33: 1.1347 L12: 0.2283 REMARK 3 L13: 0.1273 L23: 0.1901 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0563 S13: -0.0087 REMARK 3 S21: -0.0544 S22: -0.0225 S23: -0.1508 REMARK 3 S31: -0.0450 S32: 0.0086 S33: 0.0191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 18.1967 -18.9554 18.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0579 REMARK 3 T33: 0.0662 T12: 0.0109 REMARK 3 T13: 0.0068 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.4105 L22: 0.5442 REMARK 3 L33: 1.1443 L12: -0.2266 REMARK 3 L13: -0.0754 L23: 0.4675 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0229 S13: 0.0166 REMARK 3 S21: 0.0239 S22: 0.0262 S23: -0.0112 REMARK 3 S31: -0.0215 S32: -0.0560 S33: -0.0666 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DENSITY FOR THE N463 SIDE CHAIN IS REMARK 3 RELATIVELY POOR, THAT ITS CONFORMATION WAS INFORMED BY THAT REMARK 3 OBSERVED IN THE HIGHER RESOLUTION APO STRUCTURE (PDB ENTRY 3F1P) REMARK 3 AND IS MODELED WITH A HEAVY WEIGHTING TOWARD GEOMETRIC IDEALITY REMARK 3 AT THE EXPENSE OF A BEST FIT AGAINST POOR DENSITY. REMARK 4 REMARK 4 3F1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000050033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : CUSTOM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2B02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.1M BISTRIS, 0.05M REMARK 280 TRIS, 0.017M NACL, 0.005M DTT, PH 6.5, VAPOR DIFFUSION COMBINED REMARK 280 WITH MICROSEEDING, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.66050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.45400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.66050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.45400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 ASN A 328 REMARK 465 PRO A 329 REMARK 465 ARG A 330 REMARK 465 ASN A 331 REMARK 465 LEU A 332 REMARK 465 GLN A 333 REMARK 465 ASN A 350 REMARK 465 GLY B 350 REMARK 465 GLU B 351 REMARK 465 PHE B 352 REMARK 465 LYS B 353 REMARK 465 GLY B 354 REMARK 465 LEU B 355 REMARK 465 ASN B 356 REMARK 465 GLN B 469 REMARK 465 GLU B 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 410 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 430 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X0O RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE ARNT C-TERMINAL PAS-B DOMAIN REMARK 900 RELATED ID: 1P97 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HIF2 ALPHA C-TERMINAL PAS-B DOMAIN REMARK 900 RELATED ID: 2B02 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ARNT C-TERMINAL PAS DOMAIN REMARK 900 RELATED ID: 2A24 RELATED DB: PDB REMARK 900 NMR-GUIDED MODEL OF THE HETERODIMER OF THE WILD-TYPE HIF2 ALPHA AND REMARK 900 ARNT C-TERMINAL PAS DOMAINS REMARK 900 RELATED ID: 3F1O RELATED DB: PDB REMARK 900 RELATED ID: 3F1P RELATED DB: PDB DBREF 3F1N A 239 350 UNP Q99814 EPAS1_HUMAN 239 350 DBREF 3F1N B 356 470 UNP P27540 ARNT_HUMAN 356 470 SEQADV 3F1N GLY A 234 UNP Q99814 EXPRESSION TAG SEQADV 3F1N GLU A 235 UNP Q99814 EXPRESSION TAG SEQADV 3F1N PHE A 236 UNP Q99814 EXPRESSION TAG SEQADV 3F1N LYS A 237 UNP Q99814 EXPRESSION TAG SEQADV 3F1N GLY A 238 UNP Q99814 EXPRESSION TAG SEQADV 3F1N GLU A 247 UNP Q99814 ARG 247 ENGINEERED MUTATION SEQADV 3F1N GLY B 350 UNP P27540 EXPRESSION TAG SEQADV 3F1N GLU B 351 UNP P27540 EXPRESSION TAG SEQADV 3F1N PHE B 352 UNP P27540 EXPRESSION TAG SEQADV 3F1N LYS B 353 UNP P27540 EXPRESSION TAG SEQADV 3F1N GLY B 354 UNP P27540 EXPRESSION TAG SEQADV 3F1N LEU B 355 UNP P27540 EXPRESSION TAG SEQADV 3F1N ARG B 362 UNP P27540 GLU 362 ENGINEERED MUTATION SEQRES 1 A 117 GLY GLU PHE LYS GLY LEU ASP SER LYS THR PHE LEU SER SEQRES 2 A 117 GLU HIS SER MET ASP MET LYS PHE THR TYR CYS ASP ASP SEQRES 3 A 117 ARG ILE THR GLU LEU ILE GLY TYR HIS PRO GLU GLU LEU SEQRES 4 A 117 LEU GLY ARG SER ALA TYR GLU PHE TYR HIS ALA LEU ASP SEQRES 5 A 117 SER GLU ASN MET THR LYS SER HIS GLN ASN LEU CYS THR SEQRES 6 A 117 LYS GLY GLN VAL VAL SER GLY GLN TYR ARG MET LEU ALA SEQRES 7 A 117 LYS HIS GLY GLY TYR VAL TRP LEU GLU THR GLN GLY THR SEQRES 8 A 117 VAL ILE TYR ASN PRO ARG ASN LEU GLN PRO GLN CYS ILE SEQRES 9 A 117 MET CYS VAL ASN TYR VAL LEU SER GLU ILE GLU LYS ASN SEQRES 1 B 121 GLY GLU PHE LYS GLY LEU ASN VAL CYS GLN PRO THR ARG SEQRES 2 B 121 PHE ILE SER ARG HIS ASN ILE GLU GLY ILE PHE THR PHE SEQRES 3 B 121 VAL ASP HIS ARG CYS VAL ALA THR VAL GLY TYR GLN PRO SEQRES 4 B 121 GLN GLU LEU LEU GLY LYS ASN ILE VAL GLU PHE CYS HIS SEQRES 5 B 121 PRO GLU ASP GLN GLN LEU LEU ARG ASP SER PHE GLN GLN SEQRES 6 B 121 VAL VAL LYS LEU LYS GLY GLN VAL LEU SER VAL MET PHE SEQRES 7 B 121 ARG PHE ARG SER LYS ASN GLN GLU TRP LEU TRP MET ARG SEQRES 8 B 121 THR SER SER PHE THR PHE GLN ASN PRO TYR SER ASP GLU SEQRES 9 B 121 ILE GLU TYR ILE ILE CYS THR ASN THR ASN VAL LYS ASN SEQRES 10 B 121 SER SER GLN GLU HET EDO A 1 10 HET EDO A 2 10 HET EDO A 3 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *175(H2 O) HELIX 1 1 LEU A 239 SER A 241 5 3 HELIX 2 2 ASP A 259 GLY A 266 1 8 HELIX 3 3 HIS A 268 LEU A 273 1 6 HELIX 4 4 SER A 276 TYR A 281 5 6 HELIX 5 5 HIS A 282 LEU A 284 5 3 HELIX 6 6 ASP A 285 GLY A 300 1 16 HELIX 7 7 ARG B 379 GLY B 385 1 7 HELIX 8 8 GLN B 387 LEU B 392 1 6 HELIX 9 9 ASN B 395 CYS B 400 5 6 HELIX 10 10 ASP B 404 VAL B 416 1 13 SHEET 1 A 5 PHE A 254 CYS A 257 0 SHEET 2 A 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 A 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 A 5 TYR A 316 ILE A 326 -1 N THR A 324 O MET A 338 SHEET 5 A 5 GLN A 301 VAL A 303 -1 N VAL A 302 O GLY A 323 SHEET 1 B 5 PHE A 254 CYS A 257 0 SHEET 2 B 5 THR A 243 HIS A 248 -1 N GLU A 247 O THR A 255 SHEET 3 B 5 CYS A 336 VAL A 343 -1 O CYS A 339 N SER A 246 SHEET 4 B 5 TYR A 316 ILE A 326 -1 N THR A 324 O MET A 338 SHEET 5 B 5 TYR A 307 LEU A 310 -1 N TYR A 307 O LEU A 319 SHEET 1 C 5 PHE B 373 VAL B 376 0 SHEET 2 C 5 ARG B 362 HIS B 367 -1 N ARG B 366 O THR B 374 SHEET 3 C 5 TYR B 456 ASN B 463 -1 O CYS B 459 N SER B 365 SHEET 4 C 5 TRP B 436 PHE B 446 -1 N PHE B 444 O ILE B 458 SHEET 5 C 5 LEU B 423 ARG B 430 -1 N PHE B 427 O MET B 439 SITE 1 AC1 7 HOH A 10 HOH A 13 SER A 246 HIS A 248 SITE 2 AC1 7 TYR A 281 TYR A 307 ASN A 341 SITE 1 AC2 4 HOH A 10 HOH A 102 MET A 252 SER A 292 SITE 1 AC3 10 HOH A 104 TYR A 278 TYR A 281 ALA A 283 SITE 2 AC3 10 SER A 286 GLU B 398 CYS B 400 PRO B 402 SITE 3 AC3 10 GLN B 405 ARG B 430 CRYST1 73.321 82.908 41.400 90.00 106.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013639 0.000000 0.003931 0.00000 SCALE2 0.000000 0.012062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025138 0.00000