PDB Short entry for 3F6N HEADER VIRAL PROTEIN, DNA-BINDING PROTEIN 06-NOV-08 3F6N TITLE CRYSTAL STRUCTURE OF THE VIRION-ASSOCIATED PROTEIN P3 FROM TITLE 2 CAULIMOVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: VIRION ASSOCIATED PROTEIN P3, VAP, DNA-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG); SOURCE 3 ORGANISM_COMMON: CAMV; SOURCE 4 ORGANISM_TAXID: 10648; SOURCE 5 STRAIN: STRASBOURG; SOURCE 6 GENE: ORF III, ORF-3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS COILED-COIL, VIRAL PROTEIN, TETRAMER, DNA-BINDING, VIRION, DNA- KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.HOH,M.UZEST,S.BLANC,C.DUMAS REVDAT 4 01-NOV-23 3F6N 1 REMARK REVDAT 3 13-JUL-11 3F6N 1 VERSN REVDAT 2 14-APR-10 3F6N 1 JRNL REVDAT 1 24-NOV-09 3F6N 0 JRNL AUTH F.HOH,M.UZEST,M.DRUCKER,C.PLISSON-CHASTANG,P.BRON,S.BLANC, JRNL AUTH 2 C.DUMAS JRNL TITL STRUCTURAL INSIGHTS INTO THE MOLECULAR MECHANISMS OF JRNL TITL 2 CAULIFLOWER MOSAIC VIRUS TRANSMISSION BY ITS INSECT VECTOR. JRNL REF J.VIROL. V. 84 4706 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20181714 JRNL DOI 10.1128/JVI.02662-09 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 11.000 REMARK 3 FREE R VALUE TEST SET COUNT : 918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 90.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.507 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.373 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.511 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2214 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2985 ; 1.037 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 4.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;41.421 ;30.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;18.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1532 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 0.199 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2343 ; 0.437 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 770 ; 0.883 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 642 ; 1.655 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 34 4 REMARK 3 1 B 3 B 34 4 REMARK 3 1 C 3 C 34 4 REMARK 3 1 D 3 D 34 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 247 ; 0.350 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 247 ; 0.390 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 247 ; 0.470 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 247 ; 0.520 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 247 ; 0.290 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 247 ; 0.300 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 247 ; 0.320 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 247 ; 0.270 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 35 A 48 4 REMARK 3 1 B 35 B 48 4 REMARK 3 1 C 35 C 48 4 REMARK 3 1 D 35 D 48 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 106 ; 0.560 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 B (A): 106 ; 0.540 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 C (A): 106 ; 0.520 ; 0.500 REMARK 3 MEDIUM POSITIONAL 2 D (A): 106 ; 0.640 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 106 ; 0.330 ; 2.000 REMARK 3 MEDIUM THERMAL 2 B (A**2): 106 ; 0.190 ; 2.000 REMARK 3 MEDIUM THERMAL 2 C (A**2): 106 ; 0.160 ; 2.000 REMARK 3 MEDIUM THERMAL 2 D (A**2): 106 ; 0.200 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 49 A 63 4 REMARK 3 1 B 49 B 63 4 REMARK 3 1 C 49 C 63 4 REMARK 3 1 D 49 D 63 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 114 ; 0.300 ; 0.500 REMARK 3 MEDIUM POSITIONAL 3 B (A): 114 ; 0.280 ; 0.500 REMARK 3 MEDIUM POSITIONAL 3 C (A): 114 ; 0.320 ; 0.500 REMARK 3 MEDIUM POSITIONAL 3 D (A): 114 ; 0.290 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 114 ; 0.190 ; 2.000 REMARK 3 MEDIUM THERMAL 3 B (A**2): 114 ; 0.190 ; 2.000 REMARK 3 MEDIUM THERMAL 3 C (A**2): 114 ; 0.150 ; 2.000 REMARK 3 MEDIUM THERMAL 3 D (A**2): 114 ; 0.170 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 64 A 69 5 REMARK 3 1 B 64 B 69 5 REMARK 3 1 C 64 C 69 5 REMARK 3 1 D 64 D 69 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 24 ; 0.120 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 B (A): 24 ; 0.180 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 C (A): 24 ; 0.090 ; 0.500 REMARK 3 MEDIUM POSITIONAL 4 D (A): 24 ; 0.170 ; 0.500 REMARK 3 LOOSE POSITIONAL 4 A (A): 24 ; 0.680 ; 5.000 REMARK 3 LOOSE POSITIONAL 4 B (A): 24 ; 0.760 ; 5.000 REMARK 3 LOOSE POSITIONAL 4 C (A): 24 ; 0.640 ; 5.000 REMARK 3 LOOSE POSITIONAL 4 D (A): 24 ; 0.430 ; 5.000 REMARK 3 MEDIUM THERMAL 4 A (A**2): 24 ; 0.280 ; 2.000 REMARK 3 MEDIUM THERMAL 4 B (A**2): 24 ; 0.190 ; 2.000 REMARK 3 MEDIUM THERMAL 4 C (A**2): 24 ; 0.360 ; 2.000 REMARK 3 MEDIUM THERMAL 4 D (A**2): 24 ; 0.570 ; 2.000 REMARK 3 LOOSE THERMAL 4 A (A**2): 24 ; 0.260 ; NULL REMARK 3 LOOSE THERMAL 4 B (A**2): 24 ; 0.230 ; NULL REMARK 3 LOOSE THERMAL 4 C (A**2): 24 ; 0.260 ; NULL REMARK 3 LOOSE THERMAL 4 D (A**2): 24 ; 0.380 ; NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 31 REMARK 3 RESIDUE RANGE : B 2 B 31 REMARK 3 RESIDUE RANGE : C 2 C 31 REMARK 3 RESIDUE RANGE : D 3 D 31 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0020 13.8910 25.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.4478 REMARK 3 T33: 0.0194 T12: 0.0584 REMARK 3 T13: -0.0060 T23: 0.0818 REMARK 3 L TENSOR REMARK 3 L11: 17.1652 L22: 0.2571 REMARK 3 L33: 1.1930 L12: -0.1849 REMARK 3 L13: -3.2191 L23: -0.1928 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: 0.3152 S13: 0.1530 REMARK 3 S21: 0.0098 S22: 0.1938 S23: 0.0570 REMARK 3 S31: -0.0722 S32: 0.0698 S33: -0.0366 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 39 REMARK 3 RESIDUE RANGE : B 32 B 39 REMARK 3 RESIDUE RANGE : C 32 C 39 REMARK 3 RESIDUE RANGE : D 32 D 39 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1100 13.9740 24.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.6683 T22: 1.0672 REMARK 3 T33: 0.2890 T12: -0.1236 REMARK 3 T13: -0.1176 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 14.4659 L22: 0.7507 REMARK 3 L33: 0.4463 L12: 3.2640 REMARK 3 L13: -0.4179 L23: -0.0234 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -1.4639 S13: 0.4091 REMARK 3 S21: -0.0239 S22: -0.1969 S23: 0.1093 REMARK 3 S31: -0.3172 S32: 0.5876 S33: 0.1824 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 57 REMARK 3 RESIDUE RANGE : B 40 B 57 REMARK 3 RESIDUE RANGE : C 40 C 57 REMARK 3 RESIDUE RANGE : D 40 D 57 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4660 13.6430 23.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.3962 T22: 0.6656 REMARK 3 T33: 0.1467 T12: -0.0577 REMARK 3 T13: -0.0290 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 14.6544 L22: 1.1900 REMARK 3 L33: 3.1295 L12: 0.5166 REMARK 3 L13: 1.5850 L23: -0.6851 REMARK 3 S TENSOR REMARK 3 S11: 0.2567 S12: -0.1980 S13: 0.3492 REMARK 3 S21: 0.1501 S22: -0.0903 S23: 0.1837 REMARK 3 S31: 0.0298 S32: -0.4493 S33: -0.1664 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 72 REMARK 3 RESIDUE RANGE : B 58 B 75 REMARK 3 RESIDUE RANGE : C 58 C 74 REMARK 3 RESIDUE RANGE : D 58 D 74 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2620 12.4540 22.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.4252 T22: 0.6179 REMARK 3 T33: 0.1631 T12: 0.0336 REMARK 3 T13: -0.0264 T23: 0.0923 REMARK 3 L TENSOR REMARK 3 L11: 16.9822 L22: 6.6384 REMARK 3 L33: 0.7227 L12: 2.5234 REMARK 3 L13: 2.4667 L23: 0.8797 REMARK 3 S TENSOR REMARK 3 S11: 0.3184 S12: 1.1180 S13: -0.6874 REMARK 3 S21: -0.1037 S22: -0.2230 S23: 0.1406 REMARK 3 S31: 0.2742 S32: 0.0716 S33: -0.0954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY REMARK 4 REMARK 4 3F6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8369 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1000, 0.1M MES-NAOH BUFFER, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.17567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.35133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.17567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.35133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 GLU A 76 REMARK 465 GLN A 77 REMARK 465 LEU A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLN A 81 REMARK 465 PRO A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 LYS A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 GLY A 88 REMARK 465 LEU A 89 REMARK 465 ASN A 90 REMARK 465 LEU A 91 REMARK 465 GLY A 92 REMARK 465 LYS A 93 REMARK 465 TYR A 94 REMARK 465 SER A 95 REMARK 465 TYR A 96 REMARK 465 PRO A 97 REMARK 465 ASN A 98 REMARK 465 TYR A 99 REMARK 465 GLY A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 ASN A 103 REMARK 465 GLU A 104 REMARK 465 GLU A 105 REMARK 465 LEU A 106 REMARK 465 GLY A 107 REMARK 465 SER A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 ASN A 111 REMARK 465 PRO A 112 REMARK 465 LYS A 113 REMARK 465 ALA A 114 REMARK 465 LEU A 115 REMARK 465 THR A 116 REMARK 465 TRP A 117 REMARK 465 PRO A 118 REMARK 465 PHE A 119 REMARK 465 LYS A 120 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 ALA A 123 REMARK 465 GLY A 124 REMARK 465 TRP A 125 REMARK 465 PRO A 126 REMARK 465 ASN A 127 REMARK 465 GLN A 128 REMARK 465 PHE A 129 REMARK 465 MET B 1 REMARK 465 GLU B 76 REMARK 465 GLN B 77 REMARK 465 LEU B 78 REMARK 465 ILE B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 PRO B 82 REMARK 465 LYS B 83 REMARK 465 GLU B 84 REMARK 465 LYS B 85 REMARK 465 GLY B 86 REMARK 465 LYS B 87 REMARK 465 GLY B 88 REMARK 465 LEU B 89 REMARK 465 ASN B 90 REMARK 465 LEU B 91 REMARK 465 GLY B 92 REMARK 465 LYS B 93 REMARK 465 TYR B 94 REMARK 465 SER B 95 REMARK 465 TYR B 96 REMARK 465 PRO B 97 REMARK 465 ASN B 98 REMARK 465 TYR B 99 REMARK 465 GLY B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 ASN B 103 REMARK 465 GLU B 104 REMARK 465 GLU B 105 REMARK 465 LEU B 106 REMARK 465 GLY B 107 REMARK 465 SER B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 ASN B 111 REMARK 465 PRO B 112 REMARK 465 LYS B 113 REMARK 465 ALA B 114 REMARK 465 LEU B 115 REMARK 465 THR B 116 REMARK 465 TRP B 117 REMARK 465 PRO B 118 REMARK 465 PHE B 119 REMARK 465 LYS B 120 REMARK 465 ALA B 121 REMARK 465 PRO B 122 REMARK 465 ALA B 123 REMARK 465 GLY B 124 REMARK 465 TRP B 125 REMARK 465 PRO B 126 REMARK 465 ASN B 127 REMARK 465 GLN B 128 REMARK 465 PHE B 129 REMARK 465 MET C 1 REMARK 465 LYS C 75 REMARK 465 GLU C 76 REMARK 465 GLN C 77 REMARK 465 LEU C 78 REMARK 465 ILE C 79 REMARK 465 GLU C 80 REMARK 465 GLN C 81 REMARK 465 PRO C 82 REMARK 465 LYS C 83 REMARK 465 GLU C 84 REMARK 465 LYS C 85 REMARK 465 GLY C 86 REMARK 465 LYS C 87 REMARK 465 GLY C 88 REMARK 465 LEU C 89 REMARK 465 ASN C 90 REMARK 465 LEU C 91 REMARK 465 GLY C 92 REMARK 465 LYS C 93 REMARK 465 TYR C 94 REMARK 465 SER C 95 REMARK 465 TYR C 96 REMARK 465 PRO C 97 REMARK 465 ASN C 98 REMARK 465 TYR C 99 REMARK 465 GLY C 100 REMARK 465 VAL C 101 REMARK 465 GLY C 102 REMARK 465 ASN C 103 REMARK 465 GLU C 104 REMARK 465 GLU C 105 REMARK 465 LEU C 106 REMARK 465 GLY C 107 REMARK 465 SER C 108 REMARK 465 SER C 109 REMARK 465 GLY C 110 REMARK 465 ASN C 111 REMARK 465 PRO C 112 REMARK 465 LYS C 113 REMARK 465 ALA C 114 REMARK 465 LEU C 115 REMARK 465 THR C 116 REMARK 465 TRP C 117 REMARK 465 PRO C 118 REMARK 465 PHE C 119 REMARK 465 LYS C 120 REMARK 465 ALA C 121 REMARK 465 PRO C 122 REMARK 465 ALA C 123 REMARK 465 GLY C 124 REMARK 465 TRP C 125 REMARK 465 PRO C 126 REMARK 465 ASN C 127 REMARK 465 GLN C 128 REMARK 465 PHE C 129 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 75 REMARK 465 GLU D 76 REMARK 465 GLN D 77 REMARK 465 LEU D 78 REMARK 465 ILE D 79 REMARK 465 GLU D 80 REMARK 465 GLN D 81 REMARK 465 PRO D 82 REMARK 465 LYS D 83 REMARK 465 GLU D 84 REMARK 465 LYS D 85 REMARK 465 GLY D 86 REMARK 465 LYS D 87 REMARK 465 GLY D 88 REMARK 465 LEU D 89 REMARK 465 ASN D 90 REMARK 465 LEU D 91 REMARK 465 GLY D 92 REMARK 465 LYS D 93 REMARK 465 TYR D 94 REMARK 465 SER D 95 REMARK 465 TYR D 96 REMARK 465 PRO D 97 REMARK 465 ASN D 98 REMARK 465 TYR D 99 REMARK 465 GLY D 100 REMARK 465 VAL D 101 REMARK 465 GLY D 102 REMARK 465 ASN D 103 REMARK 465 GLU D 104 REMARK 465 GLU D 105 REMARK 465 LEU D 106 REMARK 465 GLY D 107 REMARK 465 SER D 108 REMARK 465 SER D 109 REMARK 465 GLY D 110 REMARK 465 ASN D 111 REMARK 465 PRO D 112 REMARK 465 LYS D 113 REMARK 465 ALA D 114 REMARK 465 LEU D 115 REMARK 465 THR D 116 REMARK 465 TRP D 117 REMARK 465 PRO D 118 REMARK 465 PHE D 119 REMARK 465 LYS D 120 REMARK 465 ALA D 121 REMARK 465 PRO D 122 REMARK 465 ALA D 123 REMARK 465 GLY D 124 REMARK 465 TRP D 125 REMARK 465 PRO D 126 REMARK 465 ASN D 127 REMARK 465 GLN D 128 REMARK 465 PHE D 129 DBREF 3F6N A 1 129 UNP P03551 VDBP_CAMVS 1 129 DBREF 3F6N B 1 129 UNP P03551 VDBP_CAMVS 1 129 DBREF 3F6N C 1 129 UNP P03551 VDBP_CAMVS 1 129 DBREF 3F6N D 1 129 UNP P03551 VDBP_CAMVS 1 129 SEQRES 1 A 129 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 A 129 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 A 129 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 A 129 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 A 129 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 A 129 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 A 129 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 A 129 GLY LYS TYR SER TYR PRO ASN TYR GLY VAL GLY ASN GLU SEQRES 9 A 129 GLU LEU GLY SER SER GLY ASN PRO LYS ALA LEU THR TRP SEQRES 10 A 129 PRO PHE LYS ALA PRO ALA GLY TRP PRO ASN GLN PHE SEQRES 1 B 129 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 B 129 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 B 129 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 B 129 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 B 129 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 B 129 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 B 129 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 B 129 GLY LYS TYR SER TYR PRO ASN TYR GLY VAL GLY ASN GLU SEQRES 9 B 129 GLU LEU GLY SER SER GLY ASN PRO LYS ALA LEU THR TRP SEQRES 10 B 129 PRO PHE LYS ALA PRO ALA GLY TRP PRO ASN GLN PHE SEQRES 1 C 129 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 C 129 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 C 129 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 C 129 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 C 129 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 C 129 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 C 129 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 C 129 GLY LYS TYR SER TYR PRO ASN TYR GLY VAL GLY ASN GLU SEQRES 9 C 129 GLU LEU GLY SER SER GLY ASN PRO LYS ALA LEU THR TRP SEQRES 10 C 129 PRO PHE LYS ALA PRO ALA GLY TRP PRO ASN GLN PHE SEQRES 1 D 129 MET ALA ASN LEU ASN GLN ILE GLN LYS GLU VAL SER GLU SEQRES 2 D 129 ILE LEU SER ASP GLN LYS SER MET LYS ALA ASP ILE LYS SEQRES 3 D 129 ALA ILE LEU GLU LEU LEU GLY SER GLN ASN PRO ILE LYS SEQRES 4 D 129 GLU SER LEU GLU THR VAL ALA ALA LYS ILE VAL ASN ASP SEQRES 5 D 129 LEU THR LYS LEU ILE ASN ASP CYS PRO CYS ASN LYS GLU SEQRES 6 D 129 ILE LEU GLU ALA LEU GLY THR GLN PRO LYS GLU GLN LEU SEQRES 7 D 129 ILE GLU GLN PRO LYS GLU LYS GLY LYS GLY LEU ASN LEU SEQRES 8 D 129 GLY LYS TYR SER TYR PRO ASN TYR GLY VAL GLY ASN GLU SEQRES 9 D 129 GLU LEU GLY SER SER GLY ASN PRO LYS ALA LEU THR TRP SEQRES 10 D 129 PRO PHE LYS ALA PRO ALA GLY TRP PRO ASN GLN PHE FORMUL 5 HOH *(H2 O) HELIX 1 1 ASN A 3 GLN A 35 1 33 HELIX 2 2 PRO A 37 ASP A 59 1 23 HELIX 3 3 CYS A 62 GLY A 71 1 10 HELIX 4 4 ALA B 2 SER B 34 1 33 HELIX 5 5 PRO B 37 CYS B 60 1 24 HELIX 6 6 CYS B 62 GLY B 71 1 10 HELIX 7 7 ALA C 2 SER C 34 1 33 HELIX 8 8 PRO C 37 ASN C 58 1 22 HELIX 9 9 ASP C 59 PRO C 61 5 3 HELIX 10 10 CYS C 62 LEU C 70 1 9 HELIX 11 11 ASN D 3 SER D 34 1 32 HELIX 12 12 PRO D 37 ASN D 58 1 22 HELIX 13 13 CYS D 62 GLY D 71 1 10 SSBOND 1 CYS A 60 CYS D 62 1555 1555 2.05 SSBOND 2 CYS A 62 CYS C 60 1555 1555 2.04 SSBOND 3 CYS B 60 CYS C 62 1555 1555 2.05 SSBOND 4 CYS B 62 CYS D 60 1555 1555 2.04 CRYST1 104.943 104.943 72.527 90.00 90.00 120.00 P 64 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009529 0.005502 0.000000 0.00000 SCALE2 0.000000 0.011003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013788 0.00000