PDB Short entry for 3FBG HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-NOV-08 3FBG TITLE CRYSTAL STRUCTURE OF A PUTATIVE ARGINATE LYASE FROM STAPHYLOCOCCUS TITLE 2 HAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ARGINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS HAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 279808; SOURCE 4 STRAIN: JCSC1435; SOURCE 5 GENE: SH0852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, LYASE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.GILMORE,K.T.BAIN,J.DO,R.ROMERO,S.WASSERMAN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 27-DEC-23 3FBG 1 REMARK REVDAT 5 10-FEB-21 3FBG 1 AUTHOR JRNL REMARK LINK REVDAT 4 14-NOV-18 3FBG 1 AUTHOR REVDAT 3 01-NOV-17 3FBG 1 REMARK REVDAT 2 13-JUL-11 3FBG 1 VERSN REVDAT 1 09-DEC-08 3FBG 0 JRNL AUTH J.B.BONANNO,M.GILMORE,K.T.BAIN,J.DO,R.ROMERO,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ARGINATE LYASE FROM JRNL TITL 2 STAPHYLOCOCCUS HAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 93820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.35000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5331 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7237 ; 1.534 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 5.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;40.300 ;25.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;13.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 844 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3999 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3336 ; 0.938 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5415 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 2.607 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1818 ; 4.181 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 82.246 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH 8.0, 29% PEG 3350, REMARK 280 200MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.77600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ASN A 336 REMARK 465 GLU A 337 REMARK 465 GLY A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LYS B 56 REMARK 465 ALA B 57 REMARK 465 THR B 326 REMARK 465 ASN B 336 REMARK 465 GLU B 337 REMARK 465 GLY B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 ASN B 325 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 62 O HOH B 443 1.95 REMARK 500 O HOH A 530 O HOH A 648 2.01 REMARK 500 O HOH A 642 O HOH A 743 2.09 REMARK 500 OD2 ASP B 92 O HOH B 419 2.09 REMARK 500 O HOH B 531 O HOH B 739 2.09 REMARK 500 O GLY B 309 ND2 ASN B 314 2.14 REMARK 500 OE1 GLN A 119 O HOH A 589 2.14 REMARK 500 O HOH A 571 O HOH A 642 2.14 REMARK 500 O HOH B 500 O HOH B 621 2.15 REMARK 500 OE1 GLU A 202 O HOH A 377 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 232 CG - SD - CE ANGL. DEV. = -14.5 DEGREES REMARK 500 MET A 269 CG - SD - CE ANGL. DEV. = -14.5 DEGREES REMARK 500 MET B 232 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 30 -52.12 -29.69 REMARK 500 ASN A 156 74.62 64.94 REMARK 500 LYS B 29 167.31 -47.42 REMARK 500 ASN B 97 45.15 -79.02 REMARK 500 ASN B 156 73.50 72.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 345 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 284 NE2 REMARK 620 2 HOH A 363 O 94.0 REMARK 620 3 HOH A 422 O 88.7 92.9 REMARK 620 4 HOH A 521 O 89.6 75.9 168.5 REMARK 620 5 HOH A 553 O 84.2 175.3 82.7 108.4 REMARK 620 6 HOH A 821 O 175.8 87.9 94.9 87.2 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 346 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 414 O REMARK 620 2 HOH A 470 O 86.3 REMARK 620 3 HOH B 387 O 177.2 91.8 REMARK 620 4 HOH B 392 O 93.9 176.0 87.8 REMARK 620 5 HOH B 393 O 87.5 92.4 90.5 83.6 REMARK 620 6 HOH B 415 O 93.7 95.6 88.6 88.4 172.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 345 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 394 O REMARK 620 2 HOH B 517 O 92.8 REMARK 620 3 HOH B 812 O 89.3 88.5 REMARK 620 4 HOH B 813 O 94.9 172.3 91.1 REMARK 620 5 HOH B 814 O 176.1 91.1 90.2 81.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 345 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11158P RELATED DB: TARGETDB DBREF 3FBG A 2 336 UNP Q4L864 Q4L864_STAHJ 2 336 DBREF 3FBG B 2 336 UNP Q4L864 Q4L864_STAHJ 2 336 SEQADV 3FBG MET A -1 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG SER A 0 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG LEU A 1 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG GLU A 337 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG GLY A 338 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 339 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 340 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 341 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 342 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 343 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS A 344 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG MET B -1 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG SER B 0 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG LEU B 1 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG GLU B 337 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG GLY B 338 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 339 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 340 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 341 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 342 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 343 UNP Q4L864 EXPRESSION TAG SEQADV 3FBG HIS B 344 UNP Q4L864 EXPRESSION TAG SEQRES 1 A 346 MET SER LEU LYS ALA ILE GLY PHE GLU GLN PRO PHE LYS SEQRES 2 A 346 LEU SER ASP GLY ASN LEU PHE LYS THR PHE ASN LEU ASP SEQRES 3 A 346 ILE PRO GLU PRO LYS VAL HIS GLU ILE LEU VAL LYS ILE SEQRES 4 A 346 GLN SER ILE SER VAL ASN PRO VAL ASP THR LYS GLN ARG SEQRES 5 A 346 LEU MET ASP VAL SER LYS ALA PRO ARG VAL LEU GLY PHE SEQRES 6 A 346 ASP ALA ILE GLY VAL VAL GLU SER VAL GLY ASN GLU VAL SEQRES 7 A 346 THR MET PHE ASN GLN GLY ASP ILE VAL TYR TYR SER GLY SEQRES 8 A 346 SER PRO ASP GLN ASN GLY SER ASN ALA GLU TYR GLN LEU SEQRES 9 A 346 ILE ASN GLU ARG LEU VAL ALA LYS ALA PRO LYS ASN ILE SEQRES 10 A 346 SER ALA GLU GLN ALA VAL SER LEU PRO LEU THR GLY ILE SEQRES 11 A 346 THR ALA TYR GLU THR LEU PHE ASP VAL PHE GLY ILE SER SEQRES 12 A 346 ARG ASN ARG ASN GLU ASN GLU GLY LYS THR LEU LEU ILE SEQRES 13 A 346 ILE ASN GLY ALA GLY GLY VAL GLY SER ILE ALA THR GLN SEQRES 14 A 346 ILE ALA LYS ALA TYR GLY LEU ARG VAL ILE THR THR ALA SEQRES 15 A 346 SER ARG ASN GLU THR ILE GLU TRP THR LYS LYS MET GLY SEQRES 16 A 346 ALA ASP ILE VAL LEU ASN HIS LYS GLU SER LEU LEU ASN SEQRES 17 A 346 GLN PHE LYS THR GLN GLY ILE GLU LEU VAL ASP TYR VAL SEQRES 18 A 346 PHE CYS THR PHE ASN THR ASP MET TYR TYR ASP ASP MET SEQRES 19 A 346 ILE GLN LEU VAL LYS PRO ARG GLY HIS ILE ALA THR ILE SEQRES 20 A 346 VAL ALA PHE GLU ASN ASP GLN ASP LEU ASN ALA LEU LYS SEQRES 21 A 346 PRO LYS SER LEU SER PHE SER HIS GLU PHE MET PHE ALA SEQRES 22 A 346 ARG PRO LEU ASN GLN THR ASP ASP MET ILE LYS HIS HIS SEQRES 23 A 346 GLU TYR LEU GLU ASP ILE THR ASN LYS VAL GLU GLN ASN SEQRES 24 A 346 ILE TYR GLN PRO THR THR THR LYS VAL ILE GLU GLY LEU SEQRES 25 A 346 THR THR GLU ASN ILE TYR GLN ALA HIS GLN ILE LEU GLU SEQRES 26 A 346 SER ASN THR MET ILE GLY LYS LEU VAL ILE ASN LEU ASN SEQRES 27 A 346 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 346 MET SER LEU LYS ALA ILE GLY PHE GLU GLN PRO PHE LYS SEQRES 2 B 346 LEU SER ASP GLY ASN LEU PHE LYS THR PHE ASN LEU ASP SEQRES 3 B 346 ILE PRO GLU PRO LYS VAL HIS GLU ILE LEU VAL LYS ILE SEQRES 4 B 346 GLN SER ILE SER VAL ASN PRO VAL ASP THR LYS GLN ARG SEQRES 5 B 346 LEU MET ASP VAL SER LYS ALA PRO ARG VAL LEU GLY PHE SEQRES 6 B 346 ASP ALA ILE GLY VAL VAL GLU SER VAL GLY ASN GLU VAL SEQRES 7 B 346 THR MET PHE ASN GLN GLY ASP ILE VAL TYR TYR SER GLY SEQRES 8 B 346 SER PRO ASP GLN ASN GLY SER ASN ALA GLU TYR GLN LEU SEQRES 9 B 346 ILE ASN GLU ARG LEU VAL ALA LYS ALA PRO LYS ASN ILE SEQRES 10 B 346 SER ALA GLU GLN ALA VAL SER LEU PRO LEU THR GLY ILE SEQRES 11 B 346 THR ALA TYR GLU THR LEU PHE ASP VAL PHE GLY ILE SER SEQRES 12 B 346 ARG ASN ARG ASN GLU ASN GLU GLY LYS THR LEU LEU ILE SEQRES 13 B 346 ILE ASN GLY ALA GLY GLY VAL GLY SER ILE ALA THR GLN SEQRES 14 B 346 ILE ALA LYS ALA TYR GLY LEU ARG VAL ILE THR THR ALA SEQRES 15 B 346 SER ARG ASN GLU THR ILE GLU TRP THR LYS LYS MET GLY SEQRES 16 B 346 ALA ASP ILE VAL LEU ASN HIS LYS GLU SER LEU LEU ASN SEQRES 17 B 346 GLN PHE LYS THR GLN GLY ILE GLU LEU VAL ASP TYR VAL SEQRES 18 B 346 PHE CYS THR PHE ASN THR ASP MET TYR TYR ASP ASP MET SEQRES 19 B 346 ILE GLN LEU VAL LYS PRO ARG GLY HIS ILE ALA THR ILE SEQRES 20 B 346 VAL ALA PHE GLU ASN ASP GLN ASP LEU ASN ALA LEU LYS SEQRES 21 B 346 PRO LYS SER LEU SER PHE SER HIS GLU PHE MET PHE ALA SEQRES 22 B 346 ARG PRO LEU ASN GLN THR ASP ASP MET ILE LYS HIS HIS SEQRES 23 B 346 GLU TYR LEU GLU ASP ILE THR ASN LYS VAL GLU GLN ASN SEQRES 24 B 346 ILE TYR GLN PRO THR THR THR LYS VAL ILE GLU GLY LEU SEQRES 25 B 346 THR THR GLU ASN ILE TYR GLN ALA HIS GLN ILE LEU GLU SEQRES 26 B 346 SER ASN THR MET ILE GLY LYS LEU VAL ILE ASN LEU ASN SEQRES 27 B 346 GLU GLY HIS HIS HIS HIS HIS HIS HET MG A 345 1 HET MG A 346 1 HET MG B 345 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *585(H2 O) HELIX 1 1 LYS A 11 GLY A 15 5 5 HELIX 2 2 ASN A 43 ARG A 50 1 8 HELIX 3 3 SER A 116 VAL A 121 1 6 HELIX 4 4 LEU A 123 ASP A 136 1 14 HELIX 5 5 ASN A 143 GLU A 148 1 6 HELIX 6 6 GLY A 159 TYR A 172 1 14 HELIX 7 7 ARG A 182 GLY A 193 1 12 HELIX 8 8 SER A 203 GLY A 212 1 10 HELIX 9 9 ASN A 224 LEU A 235 1 12 HELIX 10 10 ASP A 253 LYS A 258 5 6 HELIX 11 11 PHE A 270 ASN A 275 1 6 HELIX 12 12 MET A 280 GLN A 296 1 17 HELIX 13 13 THR A 311 SER A 324 1 14 HELIX 14 14 LYS B 11 GLY B 15 5 5 HELIX 15 15 ASN B 43 ARG B 50 1 8 HELIX 16 16 SER B 116 VAL B 121 1 6 HELIX 17 17 LEU B 123 ASP B 136 1 14 HELIX 18 18 ASN B 143 GLU B 148 5 6 HELIX 19 19 GLY B 159 TYR B 172 1 14 HELIX 20 20 ARG B 182 GLY B 193 1 12 HELIX 21 21 SER B 203 GLY B 212 1 10 HELIX 22 22 ASN B 224 LEU B 235 1 12 HELIX 23 23 ASP B 253 LYS B 258 5 6 HELIX 24 24 PHE B 270 ASN B 275 1 6 HELIX 25 25 MET B 280 GLN B 296 1 17 HELIX 26 26 THR B 311 SER B 324 1 14 SHEET 1 A 2 LEU A 1 GLY A 5 0 SHEET 2 A 2 LYS A 19 LEU A 23 -1 O PHE A 21 N ALA A 3 SHEET 1 B 5 TYR A 100 ASN A 104 0 SHEET 2 B 5 GLU A 32 VAL A 42 -1 N VAL A 35 O GLN A 101 SHEET 3 B 5 ALA A 65 VAL A 72 -1 O VAL A 68 N LYS A 36 SHEET 4 B 5 ILE A 84 TYR A 87 -1 O VAL A 85 N GLY A 67 SHEET 5 B 5 VAL A 108 LYS A 110 -1 O ALA A 109 N TYR A 86 SHEET 1 C 4 TYR A 100 ASN A 104 0 SHEET 2 C 4 GLU A 32 VAL A 42 -1 N VAL A 35 O GLN A 101 SHEET 3 C 4 LYS A 330 ASN A 334 -1 O ILE A 333 N ILE A 40 SHEET 4 C 4 THR A 303 GLU A 308 1 N THR A 304 O LYS A 330 SHEET 1 D12 ILE A 196 LEU A 198 0 SHEET 2 D12 ARG A 175 THR A 179 1 N THR A 178 O LEU A 198 SHEET 3 D12 THR A 151 ILE A 155 1 N LEU A 152 O ILE A 177 SHEET 4 D12 VAL A 216 CYS A 221 1 O PHE A 220 N ILE A 155 SHEET 5 D12 VAL A 236 THR A 244 1 O LYS A 237 N VAL A 216 SHEET 6 D12 SER A 263 HIS A 266 1 O SER A 263 N ILE A 242 SHEET 7 D12 SER B 263 HIS B 266 -1 O PHE B 264 N PHE A 264 SHEET 8 D12 VAL B 236 THR B 244 1 N ILE B 242 O SER B 263 SHEET 9 D12 VAL B 216 CYS B 221 1 N VAL B 216 O LYS B 237 SHEET 10 D12 THR B 151 ILE B 155 1 N ILE B 155 O PHE B 220 SHEET 11 D12 ARG B 175 THR B 179 1 O ILE B 177 N ILE B 154 SHEET 12 D12 ILE B 196 LEU B 198 1 O LEU B 198 N THR B 178 SHEET 1 E 2 LYS B 2 GLY B 5 0 SHEET 2 E 2 LYS B 19 ASN B 22 -1 O LYS B 19 N GLY B 5 SHEET 1 F 5 TYR B 100 ASN B 104 0 SHEET 2 F 5 GLU B 32 VAL B 42 -1 N VAL B 35 O GLN B 101 SHEET 3 F 5 ALA B 65 VAL B 72 -1 O SER B 71 N LEU B 34 SHEET 4 F 5 ILE B 84 TYR B 87 -1 O VAL B 85 N GLY B 67 SHEET 5 F 5 VAL B 108 LYS B 110 -1 O ALA B 109 N TYR B 86 SHEET 1 G 4 TYR B 100 ASN B 104 0 SHEET 2 G 4 GLU B 32 VAL B 42 -1 N VAL B 35 O GLN B 101 SHEET 3 G 4 LYS B 330 ASN B 334 -1 O ILE B 333 N ILE B 40 SHEET 4 G 4 THR B 303 GLU B 308 1 N LYS B 305 O VAL B 332 LINK NE2 HIS A 284 MG MG A 345 1555 1555 2.29 LINK MG MG A 345 O HOH A 363 1555 1555 2.14 LINK MG MG A 345 O HOH A 422 1555 1555 2.32 LINK MG MG A 345 O HOH A 521 1555 1555 2.11 LINK MG MG A 345 O HOH A 553 1555 1555 2.27 LINK MG MG A 345 O HOH A 821 1555 1555 2.26 LINK MG MG A 346 O HOH A 414 1555 1555 2.13 LINK MG MG A 346 O HOH A 470 1555 1555 2.07 LINK MG MG A 346 O HOH B 387 1555 1555 2.14 LINK MG MG A 346 O HOH B 392 1555 1555 2.13 LINK MG MG A 346 O HOH B 393 1555 1555 2.18 LINK MG MG A 346 O HOH B 415 1555 1555 1.90 LINK MG MG B 345 O HOH B 394 1555 1555 2.12 LINK MG MG B 345 O HOH B 517 1555 1555 2.10 LINK MG MG B 345 O HOH B 812 1555 1555 2.05 LINK MG MG B 345 O HOH B 813 1555 1555 2.00 LINK MG MG B 345 O HOH B 814 1555 1555 2.07 CISPEP 1 ALA A 57 PRO A 58 0 -4.59 SITE 1 AC1 6 HIS A 284 HOH A 363 HOH A 422 HOH A 521 SITE 2 AC1 6 HOH A 553 HOH A 821 SITE 1 AC2 6 HOH A 414 HOH A 470 HOH B 387 HOH B 392 SITE 2 AC2 6 HOH B 393 HOH B 415 SITE 1 AC3 6 HIS B 284 HOH B 394 HOH B 517 HOH B 812 SITE 2 AC3 6 HOH B 813 HOH B 814 CRYST1 47.198 93.552 83.240 90.00 98.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021187 0.000000 0.003303 0.00000 SCALE2 0.000000 0.010689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012159 0.00000