PDB Short entry for 3FEG HEADER TRANSFERASE 29-NOV-08 3FEG TITLE CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE BETA IN COMPLEX WITH TITLE 2 PHOSPHORYLATED HEMICHOLINIUM-3 AND ADENOSINE NUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE/ETHANOLAMINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOLINE KINASE BETA, CK, ETHANOLAMINE KINASE, EK; COMPND 5 EC: 2.7.1.32, 2.7.1.82; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHKB, CHETK, CHKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS NON-PROTEIN KINASE, CHOLINE KINASE, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, HEMICHOLINIUM-3, PHOSPHORYLATION, KINASE, PHOSPHOPROTEIN, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.HONG,W.TEMPEL,W.M.RABEH,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.W.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 06-SEP-23 3FEG 1 REMARK REVDAT 4 14-OCT-20 3FEG 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3FEG 1 REMARK REVDAT 2 01-SEP-10 3FEG 1 JRNL REVDAT 1 23-DEC-08 3FEG 0 JRNL AUTH B.S.HONG,A.ALLALI-HASSANI,W.TEMPEL,P.J.FINERTY,F.MACKENZIE, JRNL AUTH 2 S.DIMOV,M.VEDADI,H.W.PARK JRNL TITL CRYSTAL STRUCTURES OF HUMAN CHOLINE KINASE ISOFORMS IN JRNL TITL 2 COMPLEX WITH HEMICHOLINIUM-3: SINGLE AMINO ACID NEAR THE JRNL TITL 3 ACTIVE SITE INFLUENCES INHIBITOR SENSITIVITY. JRNL REF J.BIOL.CHEM. V. 285 16330 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20299452 JRNL DOI 10.1074/JBC.M109.039024 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 92425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07700 REMARK 3 B22 (A**2) : -0.12800 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3105 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2122 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4267 ; 1.462 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5114 ; 1.881 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 5.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;32.734 ;23.947 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;12.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3413 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 2.905 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 696 ; 1.582 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2852 ; 3.720 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 3.667 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1393 ; 4.871 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5227 ; 2.250 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 302 ;11.547 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5117 ; 5.366 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HEMICHOLINIUM RESTRAINTS WERE CALCULATED BY THE REMARK 3 PRODRG SERVER. REMARK 4 REMARK 4 3FEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2IG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 0.01M TRIS PH 8, 0.5M REMARK 280 SODIUM CHLORIDE, 0.005M MAGNESIUM CHLORIDE, 0.01M DTT, 0.003M REMARK 280 HEMICHOLINIUM-3, 0.005M ADP; PRECIPITANT: 0.1M SODIUM CACODYLATE, REMARK 280 30% PEG-4000, 0.2M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.99700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.49350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.99700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.49350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.93141 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.21550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 ARG A 35 REMARK 465 ARG A 36 REMARK 465 ARG A 37 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 SER A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 SER A 79 REMARK 465 ALA A 108 REMARK 465 ILE A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 255 REMARK 465 ASN A 256 REMARK 465 ALA A 257 REMARK 465 THR A 389 REMARK 465 SER A 390 REMARK 465 VAL A 391 REMARK 465 HIS A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 ARG A 47 CD NE CZ NH1 NH2 REMARK 470 ARG A 48 NE CZ NH1 NH2 REMARK 470 GLN A 51 OE1 NE2 REMARK 470 ARG A 62 CZ NH1 NH2 REMARK 470 ARG A 63 NE CZ NH1 NH2 REMARK 470 LYS A 154 NZ REMARK 470 GLU A 184 CD OE1 OE2 REMARK 470 LYS A 197 CE NZ REMARK 470 LYS A 219 CE NZ REMARK 470 LYS A 227 CD CE NZ REMARK 470 GLU A 291 CD OE1 OE2 REMARK 470 GLU A 292 CD OE1 OE2 REMARK 470 LYS A 297 CE NZ REMARK 470 ARG A 299 CZ NH1 NH2 REMARK 470 GLN A 328 OE1 NE2 REMARK 470 GLN A 331 CD OE1 NE2 REMARK 470 ARG A 332 CD NE CZ NH1 NH2 REMARK 470 LYS A 333 CE NZ REMARK 470 GLU A 336 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 226 OE2 GLU A 230 1.96 REMARK 500 OE1 GLN A 156 NH1 ARG A 159 2.02 REMARK 500 OE1 GLU A 307 O HOH A 483 2.10 REMARK 500 OE1 GLU A 283 UNK UNX A 400 2.15 REMARK 500 O3' ADP A 397 O HOH A 630 2.16 REMARK 500 O TYR A 286 UNK UNX A 400 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 145 CD GLU A 145 OE2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 176.01 179.69 REMARK 500 PRO A 180 48.04 -84.64 REMARK 500 PRO A 185 49.74 -83.56 REMARK 500 ASN A 241 1.91 81.70 REMARK 500 ASP A 242 50.64 -154.96 REMARK 500 ASP A 264 84.88 71.48 REMARK 500 THR A 365 -88.29 -126.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 FOR THE LIGAND HC7 THE STEREO-CENTER AT THE "2" POSITION IS REMARK 600 SPECIFIED AS (2S), HOWEVER CAN BE (2R) OR (2S) AS THE MORPHOLINIUM REMARK 600 RING CAN OPEN LOSING THE SPECIFIED CONFIGURATION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 247 OD1 REMARK 620 2 ASP A 264 OD2 89.7 REMARK 620 3 ADP A 397 O3B 173.7 96.3 REMARK 620 4 ADP A 397 O1A 88.6 104.0 88.0 REMARK 620 5 HOH A 633 O 68.1 140.1 105.9 45.7 REMARK 620 6 HOH A 671 O 94.9 166.9 79.7 88.4 52.7 REMARK 620 7 HOH A 672 O 93.2 83.9 89.4 172.0 128.2 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC7 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 400 DBREF 3FEG A 35 395 UNP Q9Y259 CHKB_HUMAN 35 395 SEQADV 3FEG GLY A 17 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG SER A 18 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG SER A 19 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 20 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 21 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 22 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 23 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 24 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG HIS A 25 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG SER A 26 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG SER A 27 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG GLY A 28 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG LEU A 29 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG VAL A 30 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG PRO A 31 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG ARG A 32 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG GLY A 33 UNP Q9Y259 EXPRESSION TAG SEQADV 3FEG SER A 34 UNP Q9Y259 EXPRESSION TAG SEQRES 1 A 379 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 379 VAL PRO ARG GLY SER ARG ARG ARG ALA SER SER LEU SER SEQRES 3 A 379 ARG ASP ALA GLU ARG ARG ALA TYR GLN TRP CYS ARG GLU SEQRES 4 A 379 TYR LEU GLY GLY ALA TRP ARG ARG VAL GLN PRO GLU GLU SEQRES 5 A 379 LEU ARG VAL TYR PRO VAL SER GLY GLY LEU SER ASN LEU SEQRES 6 A 379 LEU PHE ARG CYS SER LEU PRO ASP HIS LEU PRO SER VAL SEQRES 7 A 379 GLY GLU GLU PRO ARG GLU VAL LEU LEU ARG LEU TYR GLY SEQRES 8 A 379 ALA ILE LEU GLN GLY VAL ASP SER LEU VAL LEU GLU SER SEQRES 9 A 379 VAL MET PHE ALA ILE LEU ALA GLU ARG SER LEU GLY PRO SEQRES 10 A 379 GLN LEU TYR GLY VAL PHE PRO GLU GLY ARG LEU GLU GLN SEQRES 11 A 379 TYR ILE PRO SER ARG PRO LEU LYS THR GLN GLU LEU ARG SEQRES 12 A 379 GLU PRO VAL LEU SER ALA ALA ILE ALA THR LYS MET ALA SEQRES 13 A 379 GLN PHE HIS GLY MET GLU MET PRO PHE THR LYS GLU PRO SEQRES 14 A 379 HIS TRP LEU PHE GLY THR MET GLU ARG TYR LEU LYS GLN SEQRES 15 A 379 ILE GLN ASP LEU PRO PRO THR GLY LEU PRO GLU MET ASN SEQRES 16 A 379 LEU LEU GLU MET TYR SER LEU LYS ASP GLU MET GLY ASN SEQRES 17 A 379 LEU ARG LYS LEU LEU GLU SER THR PRO SER PRO VAL VAL SEQRES 18 A 379 PHE CYS HIS ASN ASP ILE GLN GLU GLY ASN ILE LEU LEU SEQRES 19 A 379 LEU SER GLU PRO GLU ASN ALA ASP SER LEU MET LEU VAL SEQRES 20 A 379 ASP PHE GLU TYR SER SER TYR ASN TYR ARG GLY PHE ASP SEQRES 21 A 379 ILE GLY ASN HIS PHE CYS GLU TRP VAL TYR ASP TYR THR SEQRES 22 A 379 HIS GLU GLU TRP PRO PHE TYR LYS ALA ARG PRO THR ASP SEQRES 23 A 379 TYR PRO THR GLN GLU GLN GLN LEU HIS PHE ILE ARG HIS SEQRES 24 A 379 TYR LEU ALA GLU ALA LYS LYS GLY GLU THR LEU SER GLN SEQRES 25 A 379 GLU GLU GLN ARG LYS LEU GLU GLU ASP LEU LEU VAL GLU SEQRES 26 A 379 VAL SER ARG TYR ALA LEU ALA SER HIS PHE PHE TRP GLY SEQRES 27 A 379 LEU TRP SER ILE LEU GLN ALA SER MET SER THR ILE GLU SEQRES 28 A 379 PHE GLY TYR LEU ASP TYR ALA GLN SER ARG PHE GLN PHE SEQRES 29 A 379 TYR PHE GLN GLN LYS GLY GLN LEU THR SER VAL HIS SER SEQRES 30 A 379 SER SER HET HC7 A 1 68 HET SO4 A 396 5 HET ADP A 397 27 HET AMP A 398 23 HET MG A 399 1 HET UNX A 400 1 HET UNX A 2 1 HETNAM HC7 (2S)-2-[4'-({DIMETHYL[2-(PHOSPHONOOXY) HETNAM 2 HC7 ETHYL]AMMONIO}ACETYL)BIPHENYL-4-YL]-2-HYDROXY-4,4- HETNAM 3 HC7 DIMETHYLMORPHOLIN-4-IUM HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN HC7 2-{4-[4-(2-{DIMETHYL[2-(PHOSPHONATOOXY) HETSYN 2 HC7 ETHYL]AZANIUMYL}ACETYL)PHENYL]PHENYL}-2-HYDROXY-4,4- HETSYN 3 HC7 DIMETHYLMORPHOLIN-4-IUM FORMUL 2 HC7 C24 H35 N2 O7 P 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 MG MG 2+ FORMUL 7 UNX 2(X) FORMUL 9 HOH *298(H2 O) HELIX 1 1 SER A 42 GLY A 58 1 17 HELIX 2 2 GLY A 59 VAL A 64 5 6 HELIX 3 3 GLN A 65 LEU A 69 5 5 HELIX 4 4 GLY A 112 ARG A 129 1 18 HELIX 5 5 LYS A 154 ARG A 159 5 6 HELIX 6 6 GLU A 160 GLY A 176 1 17 HELIX 7 7 HIS A 186 LEU A 202 1 17 HELIX 8 8 ASN A 211 TYR A 216 1 6 HELIX 9 9 SER A 217 SER A 231 1 15 HELIX 10 10 GLN A 244 GLY A 246 5 3 HELIX 11 11 ARG A 273 TRP A 284 1 12 HELIX 12 12 PRO A 300 TYR A 303 5 4 HELIX 13 13 THR A 305 LYS A 321 1 17 HELIX 14 14 SER A 327 SER A 362 1 36 HELIX 15 15 GLY A 369 GLN A 387 1 19 SHEET 1 A 5 TYR A 72 PRO A 73 0 SHEET 2 A 5 LEU A 82 SER A 86 -1 O ARG A 84 N TYR A 72 SHEET 3 A 5 GLU A 100 LEU A 105 -1 O LEU A 103 N PHE A 83 SHEET 4 A 5 GLY A 142 GLN A 146 -1 O GLU A 145 N LEU A 102 SHEET 5 A 5 LEU A 135 PHE A 139 -1 N TYR A 136 O LEU A 144 SHEET 1 B 3 SER A 150 PRO A 152 0 SHEET 2 B 3 ILE A 248 LEU A 251 -1 O LEU A 250 N ARG A 151 SHEET 3 B 3 LEU A 260 LEU A 262 -1 O MET A 261 N LEU A 249 SHEET 1 C 2 VAL A 236 CYS A 239 0 SHEET 2 C 2 SER A 269 TYR A 272 -1 O SER A 269 N CYS A 239 SHEET 1 D 2 TYR A 286 ASP A 287 0 SHEET 2 D 2 LYS A 297 ALA A 298 -1 O LYS A 297 N ASP A 287 LINK OD1 ASN A 247 MG MG A 399 1555 1555 2.25 LINK OD2 ASP A 264 MG MG A 399 1555 1555 2.48 LINK O3B ADP A 397 MG MG A 399 1555 1555 2.00 LINK O1A ADP A 397 MG MG A 399 1555 1555 1.93 LINK MG MG A 399 O HOH A 633 1555 1555 2.48 LINK MG MG A 399 O HOH A 671 1555 1555 2.08 LINK MG MG A 399 O HOH A 672 1555 1555 1.80 CISPEP 1 TRP A 293 PRO A 294 0 13.96 SITE 1 AC1 18 ASP A 242 GLN A 244 ASP A 264 TYR A 267 SITE 2 AC1 18 GLU A 283 TYR A 288 PHE A 295 TRP A 353 SITE 3 AC1 18 TRP A 356 GLU A 367 PHE A 368 TYR A 370 SITE 4 AC1 18 TYR A 373 HOH A 527 HOH A 613 HOH A 631 SITE 5 AC1 18 HOH A 632 HOH A 672 SITE 1 AC2 3 HIS A 311 ARG A 314 HIS A 315 SITE 1 AC3 21 LEU A 82 LEU A 102 ARG A 104 PRO A 133 SITE 2 AC3 21 GLU A 145 GLN A 146 TYR A 147 ILE A 148 SITE 3 AC3 21 GLY A 246 ASN A 247 LEU A 249 ASP A 264 SITE 4 AC3 21 AMP A 398 MG A 399 HOH A 527 HOH A 630 SITE 5 AC3 21 HOH A 632 HOH A 633 HOH A 634 HOH A 671 SITE 6 AC3 21 HOH A 672 SITE 1 AC4 16 VAL A 74 LEU A 82 LEU A 102 PRO A 133 SITE 2 AC4 16 GLU A 145 GLN A 146 TYR A 147 ILE A 148 SITE 3 AC4 16 GLY A 246 LEU A 249 ADP A 397 HOH A 507 SITE 4 AC4 16 HOH A 630 HOH A 633 HOH A 634 HOH A 671 SITE 1 AC5 6 ASN A 247 ASP A 264 ADP A 397 HOH A 633 SITE 2 AC5 6 HOH A 671 HOH A 672 SITE 1 AC6 4 GLU A 245 GLU A 283 TYR A 286 TYR A 288 CRYST1 97.994 72.987 62.397 90.00 117.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.000000 0.005372 0.00000 SCALE2 0.000000 0.013701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018111 0.00000