PDB Short entry for 3FGW HEADER HYDROLASE 08-DEC-08 3FGW TITLE ONE CHAIN FORM OF THE 66.3 KDA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOLIPASE B-LIKE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 66.3 KDA PROTEIN, LAMINA ANCESTOR HOMOLOG 2, LAMA-LIKE COMPND 5 PROTEIN 2, 76 KDA PROTEIN, P76, PUTATIVE PHOSPHOLIPASE B-LIKE 2 28 COMPND 6 KDA FORM, PUTATIVE PHOSPHOLIPASE B-LIKE 2 40 KDA FORM, PUTATIVE COMPND 7 PHOSPHOLIPASE B-LIKE 2 15 KDA FORM; COMPND 8 EC: 3.1.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C3H/RV; SOURCE 6 GENE: AAG44101; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HT1080; SOURCE 11 EXPRESSION_SYSTEM_CELL: FIBROSARCOMA CELL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1/HYGRO(+) KEYWDS ALPHA BETA, GLYCOSYLATED, DISULPHIDE BONDS, N-TERMINAL HYDROLASE KEYWDS 2 FOLD, OCCUPIED POCKET, ONE CHAIN FORM, GLYCOPROTEIN, HYDROLASE, KEYWDS 3 LIPID DEGRADATION, LYSOSOME EXPDTA X-RAY DIFFRACTION AUTHOR K.LAKOMEK,A.DICKMANNS,R.FICNER REVDAT 4 01-NOV-23 3FGW 1 HETSYN REVDAT 3 29-JUL-20 3FGW 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-JUL-11 3FGW 1 VERSN REVDAT 1 15-SEP-09 3FGW 0 JRNL AUTH K.LAKOMEK,A.DICKMANNS,M.KETTWIG,H.URLAUB,R.FICNER,T.LUEBKE JRNL TITL INITIAL INSIGHT INTO THE FUNCTION OF THE LYSOSOMAL 66.3 KDA JRNL TITL 2 PROTEIN FROM MOUSE BY MEANS OF X-RAY CRYSTALLOGRAPHY JRNL REF BMC STRUCT.BIOL. V. 9 56 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19706171 JRNL DOI 10.1186/1472-6807-9-56 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.LAKOMEK,A.DICKMANNS,U.MUELLER,K.KOLLMANN,F.DEUSCHL, REMARK 1 AUTH 2 A.BERNDT,T.LUEBKE,R.FICNER REMARK 1 TITL DE NOVO SULFUR SAD PHASING OF THE LYSOSOMAL 66.3 KDA PROTEIN REMARK 1 TITL 2 FROM MOUSE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 220 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19237744 REMARK 1 DOI 10.1107/S0907444908041814 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 20907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -5.06000 REMARK 3 B33 (A**2) : 6.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.539 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.342 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4446 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6059 ; 0.983 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 5.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;34.745 ;24.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;15.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 654 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3396 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2215 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3001 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.134 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; CNS 1.21 WAS ALSO USED IN REFINEMENT REMARK 4 REMARK 4 3FGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FBX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 4000, 100MM NH4AC, 100MM REMARK 280 NAAC/HAC PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.34500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.34500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 146.69000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 TRP A 54 REMARK 465 GLN A 55 REMARK 465 ARG A 56 REMARK 465 GLN A 57 REMARK 465 ASN A 58 REMARK 465 PRO A 59 REMARK 465 ASP A 60 REMARK 465 THR A 240 REMARK 465 LYS A 241 REMARK 465 PRO A 242 REMARK 465 SER A 243 REMARK 465 LEU A 244 REMARK 465 GLY A 595 REMARK 465 ARG A 596 REMARK 465 GLY A 597 REMARK 465 SER A 598 REMARK 465 HIS A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 GLY A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 75 -16.97 -148.49 REMARK 500 THR A 142 -69.12 -102.72 REMARK 500 GLU A 151 126.41 -35.06 REMARK 500 THR A 206 88.28 -164.47 REMARK 500 SER A 246 -61.43 177.39 REMARK 500 SER A 248 76.10 45.92 REMARK 500 CYS A 249 156.54 91.74 REMARK 500 MET A 275 41.80 -84.25 REMARK 500 THR A 310 105.07 -51.60 REMARK 500 ASP A 316 83.24 83.17 REMARK 500 TYR A 379 74.16 53.41 REMARK 500 ASN A 394 -11.88 67.02 REMARK 500 ARG A 401 -21.53 90.24 REMARK 500 TYR A 431 -157.36 -150.23 REMARK 500 ASN A 487 108.83 -161.56 REMARK 500 ARG A 513 58.12 -145.53 REMARK 500 GLN A 561 -33.70 -132.27 REMARK 500 HIS A 577 63.54 -153.02 REMARK 500 TRP A 593 95.09 70.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 610 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 379 OH REMARK 620 2 HOH A 712 O 73.6 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FBX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LYSOSOMAL 66.3 KDA PROTEIN FROM MOUSE REMARK 900 SOLVED BY S-SAD REMARK 900 RELATED ID: 3FGR RELATED DB: PDB REMARK 900 TWO CHAIN FORM OF THE 66.3 KDA PROTEIN AT 1.8 ANGSTROEM REMARK 900 RELATED ID: 3FGT RELATED DB: PDB REMARK 900 TWO CHAIN FORM OF THE 66.3 KDA PROTEIN FROM MOUSE LACKING THE REMARK 900 LINKER PEPTIDE DBREF 3FGW A 47 594 UNP Q3TCN2 PLBL2_MOUSE 47 594 SEQADV 3FGW GLY A 595 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW ARG A 596 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW GLY A 597 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW SER A 598 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 599 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 600 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 601 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 602 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 603 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW HIS A 604 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FGW GLY A 605 UNP Q3TCN2 EXPRESSION TAG SEQRES 1 A 559 LEU PRO THR LEU GLY PRO GLY TRP GLN ARG GLN ASN PRO SEQRES 2 A 559 ASP PRO PRO VAL SER ARG THR ARG SER LEU LEU LEU ASP SEQRES 3 A 559 ALA ALA SER GLY GLN LEU ARG LEU GLU ASP GLY PHE HIS SEQRES 4 A 559 PRO ASP ALA VAL ALA TRP ALA ASN LEU THR ASN ALA ILE SEQRES 5 A 559 ARG GLU THR GLY TRP ALA TYR LEU ASP LEU SER THR ASN SEQRES 6 A 559 GLY ARG TYR ASN ASP SER LEU GLN ALA TYR ALA ALA GLY SEQRES 7 A 559 VAL VAL GLU ALA SER VAL SER GLU GLU LEU ILE TYR MET SEQRES 8 A 559 HIS TRP MET ASN THR VAL VAL ASN TYR CYS GLY PRO PHE SEQRES 9 A 559 GLU TYR GLU VAL GLY TYR CYS GLU LYS LEU LYS ASN PHE SEQRES 10 A 559 LEU GLU ALA ASN LEU GLU TRP MET GLN ARG GLU MET GLU SEQRES 11 A 559 LEU ASN PRO ASP SER PRO TYR TRP HIS GLN VAL ARG LEU SEQRES 12 A 559 THR LEU LEU GLN LEU LYS GLY LEU GLU ASP SER TYR GLU SEQRES 13 A 559 GLY ARG LEU THR PHE PRO THR GLY ARG PHE THR ILE LYS SEQRES 14 A 559 PRO LEU GLY PHE LEU LEU LEU GLN ILE SER GLY ASP LEU SEQRES 15 A 559 GLU ASP LEU GLU PRO ALA LEU ASN LYS THR ASN THR LYS SEQRES 16 A 559 PRO SER LEU GLY SER GLY SER CYS SER ALA LEU ILE LYS SEQRES 17 A 559 LEU LEU PRO GLY GLY HIS ASP LEU LEU VAL ALA HIS ASN SEQRES 18 A 559 THR TRP ASN SER TYR GLN ASN MET LEU ARG ILE ILE LYS SEQRES 19 A 559 LYS TYR ARG LEU GLN PHE ARG GLU GLY PRO GLN GLU GLU SEQRES 20 A 559 TYR PRO LEU VAL ALA GLY ASN ASN LEU VAL PHE SER SER SEQRES 21 A 559 TYR PRO GLY THR ILE PHE SER GLY ASP ASP PHE TYR ILE SEQRES 22 A 559 LEU GLY SER GLY LEU VAL THR LEU GLU THR THR ILE GLY SEQRES 23 A 559 ASN LYS ASN PRO ALA LEU TRP LYS TYR VAL GLN PRO GLN SEQRES 24 A 559 GLY CYS VAL LEU GLU TRP ILE ARG ASN VAL VAL ALA ASN SEQRES 25 A 559 ARG LEU ALA LEU ASP GLY ALA THR TRP ALA ASP VAL PHE SEQRES 26 A 559 LYS ARG PHE ASN SER GLY THR TYR ASN ASN GLN TRP MET SEQRES 27 A 559 ILE VAL ASP TYR LYS ALA PHE LEU PRO ASN GLY PRO SER SEQRES 28 A 559 PRO GLY SER ARG VAL LEU THR ILE LEU GLU GLN ILE PRO SEQRES 29 A 559 GLY MET VAL VAL VAL ALA ASP LYS THR ALA GLU LEU TYR SEQRES 30 A 559 LYS THR THR TYR TRP ALA SER TYR ASN ILE PRO TYR PHE SEQRES 31 A 559 GLU THR VAL PHE ASN ALA SER GLY LEU GLN ALA LEU VAL SEQRES 32 A 559 ALA GLN TYR GLY ASP TRP PHE SER TYR THR LYS ASN PRO SEQRES 33 A 559 ARG ALA LYS ILE PHE GLN ARG ASP GLN SER LEU VAL GLU SEQRES 34 A 559 ASP MET ASP ALA MET VAL ARG LEU MET ARG TYR ASN ASP SEQRES 35 A 559 PHE LEU HIS ASP PRO LEU SER LEU CYS GLU ALA CYS ASN SEQRES 36 A 559 PRO LYS PRO ASN ALA GLU ASN ALA ILE SER ALA ARG SER SEQRES 37 A 559 ASP LEU ASN PRO ALA ASN GLY SER TYR PRO PHE GLN ALA SEQRES 38 A 559 LEU HIS GLN ARG ALA HIS GLY GLY ILE ASP VAL LYS VAL SEQRES 39 A 559 THR SER PHE THR LEU ALA LYS TYR MET SER MET LEU ALA SEQRES 40 A 559 ALA SER GLY PRO THR TRP ASP GLN CYS PRO PRO PHE GLN SEQRES 41 A 559 TRP SER LYS SER PRO PHE HIS SER MET LEU HIS MET GLY SEQRES 42 A 559 GLN PRO ASP LEU TRP MET PHE SER PRO ILE ARG VAL PRO SEQRES 43 A 559 TRP ASP GLY ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MODRES 3FGW ASN A 93 ASN GLYCOSYLATION SITE MODRES 3FGW ASN A 115 ASN GLYCOSYLATION SITE MODRES 3FGW ASN A 236 ASN GLYCOSYLATION SITE MODRES 3FGW ASN A 441 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG A 21 14 HET NAG A 31 14 HET NAG A 1 14 HET GOL A 4 6 HET GOL A 8 6 HET GOL A 606 6 HET IOD A 607 1 HET IOD A 15 1 HET IOD A 16 1 HET IOD A 17 1 HET IOD A 20 1 HET IOD A 608 1 HET IOD A 609 1 HET NA A 610 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 IOD 7(I 1-) FORMUL 16 NA NA 1+ FORMUL 17 HOH *160(H2 O) HELIX 1 1 ASN A 115 SER A 131 1 17 HELIX 2 2 SER A 131 THR A 142 1 12 HELIX 3 3 GLU A 153 ASN A 178 1 26 HELIX 4 4 SER A 181 GLU A 202 1 22 HELIX 5 5 ASP A 227 LEU A 235 1 9 HELIX 6 6 PRO A 257 HIS A 260 5 4 HELIX 7 7 GLN A 273 MET A 275 5 3 HELIX 8 8 ASN A 335 VAL A 342 5 8 HELIX 9 9 LEU A 349 ALA A 361 1 13 HELIX 10 10 ASP A 363 ARG A 373 1 11 HELIX 11 11 LYS A 418 THR A 426 1 9 HELIX 12 12 PHE A 436 SER A 443 1 8 HELIX 13 13 LEU A 445 GLY A 453 1 9 HELIX 14 14 ASP A 454 PHE A 456 5 3 HELIX 15 15 ASN A 461 GLN A 471 1 11 HELIX 16 16 SER A 472 VAL A 474 5 3 HELIX 17 17 ASP A 476 ARG A 485 1 10 HELIX 18 18 ASP A 492 LEU A 496 5 5 HELIX 19 19 ARG A 513 ASN A 517 5 5 HELIX 20 20 PHE A 525 HIS A 529 5 5 HELIX 21 21 SER A 542 TYR A 548 1 7 SHEET 1 A11 LEU A 78 ASP A 82 0 SHEET 2 A11 SER A 64 LEU A 71 -1 N SER A 68 O GLU A 81 SHEET 3 A11 ALA A 90 ASN A 96 -1 O ALA A 90 N LEU A 69 SHEET 4 A11 ALA A 104 THR A 110 -1 O TYR A 105 N THR A 95 SHEET 5 A11 ILE A 278 ARG A 283 1 O ARG A 283 N LEU A 108 SHEET 6 A11 ASN A 301 SER A 306 -1 O PHE A 304 N LYS A 280 SHEET 7 A11 PHE A 317 LEU A 320 -1 O ILE A 319 N VAL A 303 SHEET 8 A11 LEU A 324 THR A 330 -1 O LEU A 324 N LEU A 320 SHEET 9 A11 ASN A 381 ASP A 387 -1 O VAL A 386 N VAL A 325 SHEET 10 A11 LEU A 403 ILE A 409 -1 O LEU A 406 N TRP A 383 SHEET 11 A11 MET A 412 ASP A 417 -1 O MET A 412 N ILE A 409 SHEET 1 B 6 TYR A 427 SER A 430 0 SHEET 2 B 6 SER A 250 LEU A 255 -1 N ILE A 253 O TRP A 428 SHEET 3 B 6 LEU A 262 ASN A 267 -1 O ASN A 267 N SER A 250 SHEET 4 B 6 ASP A 537 THR A 541 -1 O LYS A 539 N HIS A 266 SHEET 5 B 6 MET A 551 SER A 555 -1 O LEU A 552 N VAL A 540 SHEET 6 B 6 ILE A 589 VAL A 591 -1 O ILE A 589 N ALA A 553 SHEET 1 C 2 TRP A 269 SER A 271 0 SHEET 2 C 2 HIS A 533 GLY A 535 -1 O GLY A 534 N ASN A 270 SSBOND 1 CYS A 147 CYS A 157 1555 1555 2.03 SSBOND 2 CYS A 497 CYS A 500 1555 1555 2.04 LINK C1 NAG A 1 ND2 ASN A 93 1555 1555 1.45 LINK C1 NAG A 21 ND2 ASN A 236 1555 1555 1.45 LINK C1 NAG A 31 ND2 ASN A 441 1555 1555 1.45 LINK ND2 ASN A 115 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK OH TYR A 379 NA NA A 610 1555 1555 2.91 LINK NA NA A 610 O HOH A 712 1555 1555 2.97 CISPEP 1 ASN A 501 PRO A 502 0 3.50 CISPEP 2 VAL A 591 PRO A 592 0 6.61 CRYST1 146.690 88.110 73.550 90.00 111.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006817 0.000000 0.002630 0.00000 SCALE2 0.000000 0.011349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014573 0.00000