PDB Short entry for 3FM3 HEADER HYDROLASE 19-DEC-08 3FM3 TITLE CRYSTAL STRUCTURE OF AN ENCEPHALITOZOON CUNICULI METHIONINE TITLE 2 AMINOPEPTIDASE TYPE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METAP 2, MAP-2, PEPTIDASE M 2; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 6035; SOURCE 4 STRAIN: GB-M1; SOURCE 5 GENE: ECU10_0750, MAP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBAC2 KEYWDS METHIONINE AMINOPEPTIDASE TYPE2, METAP2, ENCEPHALITOZOON CUNICULI, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, KEYWDS 4 AMINOPEPTIDASE, COBALT, HYDROLASE, METAL-BINDING, PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ALVARADO,M.RUSSELL,A.ZHANG,J.ADAMS,R.TORO,S.K.BURLEY,L.M.WEISS, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 5 06-SEP-23 3FM3 1 REMARK REVDAT 4 10-FEB-21 3FM3 1 AUTHOR REMARK LINK REVDAT 3 01-NOV-17 3FM3 1 REMARK REVDAT 2 22-DEC-09 3FM3 1 JRNL REVDAT 1 13-JAN-09 3FM3 0 SPRSDE 13-JAN-09 3FM3 2NW5 JRNL AUTH J.J.ALVARADO,A.NEMKAL,J.M.SAUDER,M.RUSSELL,D.E.AKIYOSHI, JRNL AUTH 2 W.SHI,S.C.ALMO,L.M.WEISS JRNL TITL STRUCTURE OF A MICROSPORIDIAN METHIONINE AMINOPEPTIDASE TYPE JRNL TITL 2 2 COMPLEXED WITH FUMAGILLIN AND TNP-470. JRNL REF MOL.BIOCHEM.PARASITOL. V. 168 158 2009 JRNL REFN ISSN 0166-6851 JRNL PMID 19660503 JRNL DOI 10.1016/J.MOLBIOPARA.2009.07.008 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 37498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5663 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7670 ; 1.314 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 6.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;31.316 ;23.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 972 ;15.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.151 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 858 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4293 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3538 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5720 ; 1.090 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2125 ; 1.844 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1946 ; 3.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9460 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BOA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M AMMONIUM SULFATE. REMARK 280 CRYOSOLUTION: 30% PEG 4000, 0.2M AMMONIUM SULFATE, 10% MPD, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.13700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CB CG CD OE1 NE2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 197 NE CZ NH1 NH2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 235 CD CE NZ REMARK 470 LYS A 275 CD CE NZ REMARK 470 GLU A 346 CB CG CD OE1 OE2 REMARK 470 GLN B 8 CB CG CD OE1 NE2 REMARK 470 LYS B 19 CD CE NZ REMARK 470 ARG B 32 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 37 CD OE1 OE2 REMARK 470 LYS B 275 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 -47.26 72.16 REMARK 500 ASP A 20 63.00 -104.69 REMARK 500 ASP A 30 -165.90 -74.16 REMARK 500 ASN A 104 -113.06 55.71 REMARK 500 ASP A 173 -0.13 66.25 REMARK 500 PHE A 215 13.89 51.06 REMARK 500 LYS A 268 143.96 94.41 REMARK 500 ASP A 329 -169.13 -79.33 REMARK 500 LEU B 5 -48.77 73.40 REMARK 500 ASN B 104 -117.99 62.28 REMARK 500 ARG B 229 16.88 59.32 REMARK 500 ASP B 329 -164.58 -75.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 268 SER A 269 -149.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 452 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 ASP A 130 OD2 52.9 REMARK 620 3 ASP A 141 OD1 94.3 147.2 REMARK 620 4 GLU A 339 OE1 104.2 96.8 89.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 451 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 HIS A 210 NE2 91.2 REMARK 620 3 GLU A 339 OE2 76.1 111.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 552 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 ASP B 130 OD2 54.9 REMARK 620 3 ASP B 141 OD1 101.4 155.5 REMARK 620 4 GLU B 339 OE1 100.7 101.5 87.8 REMARK 620 5 HOH B 537 O 130.4 89.1 105.6 120.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 551 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 141 OD2 REMARK 620 2 HIS B 210 NE2 89.7 REMARK 620 3 GLU B 243 OE2 172.5 95.9 REMARK 620 4 GLU B 339 OE2 88.2 114.3 84.9 REMARK 620 5 HOH B 537 O 83.9 129.8 96.2 115.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENCEPHALITOZOON CUNICULI METHIONINE REMARK 900 AMINOPEPTIDASE TYPE 2 WITH ANGIOGENESIS INHIBITOR FUMAGILLIN BOUND REMARK 900 RELATED ID: 3FMR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENCEPHALITOZOON CUNICULI METHIONINE REMARK 900 AMINOPEPTIDASE TYPE 2 WITH ANGIOGENESIS INHIBITOR TNP470 BOUND REMARK 900 RELATED ID: NYSGXRC-9201A RELATED DB: TARGETDB DBREF 3FM3 A 1 358 UNP Q8SR45 AMPM2_ENCCU 1 358 DBREF 3FM3 B 1 358 UNP Q8SR45 AMPM2_ENCCU 1 358 SEQRES 1 A 358 MET LYS CYS ILE LEU LEU ASN GLN ALA GLU GLU LEU PRO SEQRES 2 A 358 ILE GLU PHE LEU PRO LYS ASP GLY VAL TYR GLY LYS GLY SEQRES 3 A 358 LYS LEU PHE ASP SER ARG ASN MET GLU ILE GLU ASN PHE SEQRES 4 A 358 THR GLU SER ASP ILE LEU GLN ASP ALA ARG ARG ALA ALA SEQRES 5 A 358 GLU ALA HIS ARG ARG ALA ARG TYR ARG VAL GLN SER ILE SEQRES 6 A 358 VAL ARG PRO GLY ILE THR LEU LEU GLU ILE VAL ARG SER SEQRES 7 A 358 ILE GLU ASP SER THR ARG THR LEU LEU LYS GLY GLU ARG SEQRES 8 A 358 ASN ASN GLY ILE GLY PHE PRO ALA GLY MET SER MET ASN SEQRES 9 A 358 SER CYS ALA ALA HIS TYR THR VAL ASN PRO GLY GLU GLN SEQRES 10 A 358 ASP ILE VAL LEU LYS GLU ASP ASP VAL LEU LYS ILE ASP SEQRES 11 A 358 PHE GLY THR HIS SER ASP GLY ARG ILE MET ASP SER ALA SEQRES 12 A 358 PHE THR VAL ALA PHE LYS GLU ASN LEU GLU PRO LEU LEU SEQRES 13 A 358 VAL ALA ALA ARG GLU GLY THR GLU THR GLY ILE LYS SER SEQRES 14 A 358 LEU GLY VAL ASP VAL ARG VAL CYS ASP ILE GLY ARG ASP SEQRES 15 A 358 ILE ASN GLU VAL ILE SER SER TYR GLU VAL GLU ILE GLY SEQRES 16 A 358 GLY ARG MET TRP PRO ILE ARG PRO ILE SER ASP LEU HIS SEQRES 17 A 358 GLY HIS SER ILE SER GLN PHE ARG ILE HIS GLY GLY ILE SEQRES 18 A 358 SER ILE PRO ALA VAL ASN ASN ARG ASP THR THR ARG ILE SEQRES 19 A 358 LYS GLY ASP SER PHE TYR ALA VAL GLU THR PHE ALA THR SEQRES 20 A 358 THR GLY LYS GLY SER ILE ASP ASP ARG PRO PRO CYS SER SEQRES 21 A 358 HIS PHE VAL LEU ASN THR TYR LYS SER ARG LYS LEU PHE SEQRES 22 A 358 ASN LYS ASP LEU ILE LYS VAL TYR GLU PHE VAL LYS ASP SEQRES 23 A 358 SER LEU GLY THR LEU PRO PHE SER PRO ARG HIS LEU ASP SEQRES 24 A 358 TYR TYR GLY LEU VAL LYS GLY GLY SER LEU LYS SER VAL SEQRES 25 A 358 ASN LEU LEU THR MET MET GLY LEU LEU THR PRO TYR PRO SEQRES 26 A 358 PRO LEU ASN ASP ILE ASP GLY CYS LYS VAL ALA GLN PHE SEQRES 27 A 358 GLU HIS THR VAL TYR LEU SER GLU HIS GLY LYS GLU VAL SEQRES 28 A 358 LEU THR ARG GLY ASP ASP TYR SEQRES 1 B 358 MET LYS CYS ILE LEU LEU ASN GLN ALA GLU GLU LEU PRO SEQRES 2 B 358 ILE GLU PHE LEU PRO LYS ASP GLY VAL TYR GLY LYS GLY SEQRES 3 B 358 LYS LEU PHE ASP SER ARG ASN MET GLU ILE GLU ASN PHE SEQRES 4 B 358 THR GLU SER ASP ILE LEU GLN ASP ALA ARG ARG ALA ALA SEQRES 5 B 358 GLU ALA HIS ARG ARG ALA ARG TYR ARG VAL GLN SER ILE SEQRES 6 B 358 VAL ARG PRO GLY ILE THR LEU LEU GLU ILE VAL ARG SER SEQRES 7 B 358 ILE GLU ASP SER THR ARG THR LEU LEU LYS GLY GLU ARG SEQRES 8 B 358 ASN ASN GLY ILE GLY PHE PRO ALA GLY MET SER MET ASN SEQRES 9 B 358 SER CYS ALA ALA HIS TYR THR VAL ASN PRO GLY GLU GLN SEQRES 10 B 358 ASP ILE VAL LEU LYS GLU ASP ASP VAL LEU LYS ILE ASP SEQRES 11 B 358 PHE GLY THR HIS SER ASP GLY ARG ILE MET ASP SER ALA SEQRES 12 B 358 PHE THR VAL ALA PHE LYS GLU ASN LEU GLU PRO LEU LEU SEQRES 13 B 358 VAL ALA ALA ARG GLU GLY THR GLU THR GLY ILE LYS SER SEQRES 14 B 358 LEU GLY VAL ASP VAL ARG VAL CYS ASP ILE GLY ARG ASP SEQRES 15 B 358 ILE ASN GLU VAL ILE SER SER TYR GLU VAL GLU ILE GLY SEQRES 16 B 358 GLY ARG MET TRP PRO ILE ARG PRO ILE SER ASP LEU HIS SEQRES 17 B 358 GLY HIS SER ILE SER GLN PHE ARG ILE HIS GLY GLY ILE SEQRES 18 B 358 SER ILE PRO ALA VAL ASN ASN ARG ASP THR THR ARG ILE SEQRES 19 B 358 LYS GLY ASP SER PHE TYR ALA VAL GLU THR PHE ALA THR SEQRES 20 B 358 THR GLY LYS GLY SER ILE ASP ASP ARG PRO PRO CYS SER SEQRES 21 B 358 HIS PHE VAL LEU ASN THR TYR LYS SER ARG LYS LEU PHE SEQRES 22 B 358 ASN LYS ASP LEU ILE LYS VAL TYR GLU PHE VAL LYS ASP SEQRES 23 B 358 SER LEU GLY THR LEU PRO PHE SER PRO ARG HIS LEU ASP SEQRES 24 B 358 TYR TYR GLY LEU VAL LYS GLY GLY SER LEU LYS SER VAL SEQRES 25 B 358 ASN LEU LEU THR MET MET GLY LEU LEU THR PRO TYR PRO SEQRES 26 B 358 PRO LEU ASN ASP ILE ASP GLY CYS LYS VAL ALA GLN PHE SEQRES 27 B 358 GLU HIS THR VAL TYR LEU SER GLU HIS GLY LYS GLU VAL SEQRES 28 B 358 LEU THR ARG GLY ASP ASP TYR HET FE A 451 1 HET FE A 452 1 HET SO4 A 602 5 HET SO4 A 603 5 HET FE B 551 1 HET FE B 552 1 HET SO4 B 601 5 HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION FORMUL 3 FE 4(FE 3+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *324(H2 O) HELIX 1 1 SER A 42 VAL A 66 1 25 HELIX 2 2 THR A 71 LEU A 87 1 17 HELIX 3 3 GLU A 90 ASN A 93 5 4 HELIX 4 4 LYS A 149 ASN A 151 5 3 HELIX 5 5 LEU A 152 LEU A 170 1 19 HELIX 6 6 ARG A 175 SER A 188 1 14 HELIX 7 7 ASN A 274 LEU A 288 1 15 HELIX 8 8 SER A 294 TYR A 301 1 8 HELIX 9 9 SER A 308 MET A 318 1 11 HELIX 10 10 SER B 42 SER B 64 1 23 HELIX 11 11 THR B 71 LEU B 87 1 17 HELIX 12 12 GLU B 90 ASN B 93 5 4 HELIX 13 13 LYS B 149 ASN B 151 5 3 HELIX 14 14 LEU B 152 LEU B 170 1 19 HELIX 15 15 ARG B 175 SER B 188 1 14 HELIX 16 16 ASN B 274 LEU B 288 1 15 HELIX 17 17 SER B 294 TYR B 300 1 7 HELIX 18 18 SER B 308 MET B 318 1 11 SHEET 1 A 6 GLU A 35 ILE A 36 0 SHEET 2 A 6 LEU A 28 PHE A 29 -1 N LEU A 28 O ILE A 36 SHEET 3 A 6 GLY A 348 VAL A 351 -1 O LYS A 349 N PHE A 29 SHEET 4 A 6 VAL A 335 SER A 345 -1 N TYR A 343 O GLU A 350 SHEET 5 A 6 SER A 238 THR A 247 -1 N SER A 238 O LEU A 344 SHEET 6 A 6 ARG A 202 PRO A 203 -1 N ARG A 202 O THR A 247 SHEET 1 B 7 GLU A 35 ILE A 36 0 SHEET 2 B 7 LEU A 28 PHE A 29 -1 N LEU A 28 O ILE A 36 SHEET 3 B 7 GLY A 348 VAL A 351 -1 O LYS A 349 N PHE A 29 SHEET 4 B 7 VAL A 335 SER A 345 -1 N TYR A 343 O GLU A 350 SHEET 5 B 7 SER A 238 THR A 247 -1 N SER A 238 O LEU A 344 SHEET 6 B 7 GLY A 209 ILE A 212 -1 N HIS A 210 O ALA A 241 SHEET 7 B 7 SER A 222 ILE A 223 -1 O ILE A 223 N GLY A 209 SHEET 1 C 3 ILE A 95 MET A 103 0 SHEET 2 C 3 VAL A 126 SER A 135 -1 O ASP A 130 N GLY A 100 SHEET 3 C 3 ARG A 138 ALA A 147 -1 O VAL A 146 N LEU A 127 SHEET 1 D 3 CYS A 106 ALA A 108 0 SHEET 2 D 3 LEU A 327 ASN A 328 -1 O LEU A 327 N ALA A 107 SHEET 3 D 3 ASP A 254 ASP A 255 -1 N ASP A 254 O ASN A 328 SHEET 1 E 2 GLU A 191 GLU A 193 0 SHEET 2 E 2 MET A 198 PRO A 200 -1 O TRP A 199 N VAL A 192 SHEET 1 F 2 PHE A 262 LEU A 264 0 SHEET 2 F 2 LEU A 321 PRO A 323 -1 O THR A 322 N VAL A 263 SHEET 1 G 6 GLU B 35 ILE B 36 0 SHEET 2 G 6 LEU B 28 PHE B 29 -1 N LEU B 28 O ILE B 36 SHEET 3 G 6 GLY B 348 VAL B 351 -1 O LYS B 349 N PHE B 29 SHEET 4 G 6 VAL B 335 SER B 345 -1 N TYR B 343 O GLU B 350 SHEET 5 G 6 SER B 238 THR B 247 -1 N VAL B 242 O HIS B 340 SHEET 6 G 6 ARG B 202 PRO B 203 -1 N ARG B 202 O THR B 247 SHEET 1 H 7 GLU B 35 ILE B 36 0 SHEET 2 H 7 LEU B 28 PHE B 29 -1 N LEU B 28 O ILE B 36 SHEET 3 H 7 GLY B 348 VAL B 351 -1 O LYS B 349 N PHE B 29 SHEET 4 H 7 VAL B 335 SER B 345 -1 N TYR B 343 O GLU B 350 SHEET 5 H 7 SER B 238 THR B 247 -1 N VAL B 242 O HIS B 340 SHEET 6 H 7 GLY B 209 ILE B 212 -1 N HIS B 210 O ALA B 241 SHEET 7 H 7 SER B 222 ILE B 223 -1 O ILE B 223 N GLY B 209 SHEET 1 I 3 ILE B 95 MET B 103 0 SHEET 2 I 3 VAL B 126 SER B 135 -1 O LYS B 128 N SER B 102 SHEET 3 I 3 ARG B 138 ALA B 147 -1 O MET B 140 N THR B 133 SHEET 1 J 3 CYS B 106 ALA B 108 0 SHEET 2 J 3 LEU B 327 ASN B 328 -1 O LEU B 327 N ALA B 107 SHEET 3 J 3 ASP B 254 ASP B 255 -1 N ASP B 254 O ASN B 328 SHEET 1 K 2 GLU B 191 ILE B 194 0 SHEET 2 K 2 ARG B 197 PRO B 200 -1 O TRP B 199 N VAL B 192 SHEET 1 L 2 PHE B 262 LEU B 264 0 SHEET 2 L 2 LEU B 321 PRO B 323 -1 O THR B 322 N VAL B 263 LINK OD1 ASP A 130 FE FE A 452 1555 1555 2.17 LINK OD2 ASP A 130 FE FE A 452 1555 1555 2.63 LINK OD2 ASP A 141 FE FE A 451 1555 1555 2.15 LINK OD1 ASP A 141 FE FE A 452 1555 1555 2.00 LINK NE2 HIS A 210 FE FE A 451 1555 1555 2.44 LINK OE2 GLU A 339 FE FE A 451 1555 1555 2.21 LINK OE1 GLU A 339 FE FE A 452 1555 1555 2.09 LINK OD1 ASP B 130 FE FE B 552 1555 1555 2.06 LINK OD2 ASP B 130 FE FE B 552 1555 1555 2.55 LINK OD2 ASP B 141 FE FE B 551 1555 1555 2.29 LINK OD1 ASP B 141 FE FE B 552 1555 1555 2.10 LINK NE2 HIS B 210 FE FE B 551 1555 1555 2.25 LINK OE2 GLU B 243 FE FE B 551 1555 1555 2.73 LINK OE2 GLU B 339 FE FE B 551 1555 1555 2.28 LINK OE1 GLU B 339 FE FE B 552 1555 1555 1.95 LINK O HOH B 537 FE FE B 551 1555 1555 2.28 LINK O HOH B 537 FE FE B 552 1555 1555 2.34 CISPEP 1 GLY A 219 GLY A 220 0 6.33 CISPEP 2 PRO A 257 PRO A 258 0 -3.66 CISPEP 3 PRO B 257 PRO B 258 0 1.30 SITE 1 AC1 6 ASP A 141 HIS A 210 GLU A 243 GLU A 339 SITE 2 AC1 6 FE A 452 HOH A 498 SITE 1 AC2 6 PHE A 97 ASP A 130 ASP A 141 GLU A 339 SITE 2 AC2 6 FE A 451 HOH A 498 SITE 1 AC3 2 ARG A 77 ARG A 296 SITE 1 AC4 3 LYS A 88 ARG B 77 ARG B 296 SITE 1 AC5 6 ASP B 141 HIS B 210 GLU B 243 GLU B 339 SITE 2 AC5 6 HOH B 537 FE B 552 SITE 1 AC6 6 PHE B 97 ASP B 130 ASP B 141 GLU B 339 SITE 2 AC6 6 HOH B 537 FE B 551 SITE 1 AC7 8 LYS A 305 HOH A 440 ARG B 91 ASP B 136 SITE 2 AC7 8 PHE B 215 HOH B 369 HOH B 370 HOH B 383 CRYST1 62.204 94.274 66.496 90.00 99.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016076 0.000000 0.002610 0.00000 SCALE2 0.000000 0.010607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015235 0.00000