PDB Short entry for 3FNV HEADER METAL BINDING PROTEIN 26-DEC-08 3FNV TITLE CRYSTAL STRUCTURE OF MINER1: THE REDOX-ACTIVE 2FE-2S PROTEIN CAUSATIVE TITLE 2 IN WOLFRAM SYNDROME 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDGSH IRON SULFUR DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL WATER-SOLUBLE DOMAIN: UNP RESIDUES 57-135; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM INTERMEMBRANE SMALL PROTEIN, MITONEET- COMPND 6 RELATED 1 PROTEIN, MINER1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDGSH2, CISD2, ERIS, ZCD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS DIABETES, MEMBRANE BOUND, THIAZOLIDINEDIONE, OXIDATIVE STRESS, CDGSH, KEYWDS 2 ENDOPLASMIC RETICULUM, IRON, IRON-SULFUR, MEMBRANE, METAL-BINDING, KEYWDS 3 TRANSMEMBRANE, ZINC-FINGER, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.CONLAN,H.L.AXELROD,A.E.COHEN,E.C.ABRESCH,D.YEE,J.ZURIS, AUTHOR 2 R.NECHUSHTAI,P.A.JENNINGS,M.L.PADDOCK REVDAT 7 21-FEB-24 3FNV 1 REMARK REVDAT 6 20-OCT-21 3FNV 1 REMARK SEQADV REVDAT 5 13-JUL-11 3FNV 1 VERSN REVDAT 4 08-SEP-09 3FNV 1 JRNL REVDAT 3 01-SEP-09 3FNV 1 TITLE REVDAT 2 25-AUG-09 3FNV 1 TITLE REVDAT 1 18-AUG-09 3FNV 0 JRNL AUTH A.R.CONLAN,H.L.AXELROD,A.E.COHEN,E.C.ABRESCH,J.ZURIS,D.YEE, JRNL AUTH 2 R.NECHUSHTAI,P.A.JENNINGS,M.L.PADDOCK JRNL TITL CRYSTAL STRUCTURE OF MINER1: THE REDOX-ACTIVE 2FE-2S PROTEIN JRNL TITL 2 CAUSATIVE IN WOLFRAM SYNDROME 2. JRNL REF J.MOL.BIOL. V. 392 143 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19580816 JRNL DOI 10.1016/J.JMB.2009.06.079 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 9013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 611 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1056 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 683 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1440 ; 1.859 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1695 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 4.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;33.462 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 176 ;11.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.142 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1171 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 187 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 181 ; 0.208 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 726 ; 0.200 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 510 ; 0.176 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 541 ; 0.089 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.135 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.163 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 6 ; 0.143 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.306 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 731 ; 1.803 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 272 ; 0.500 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1106 ; 2.536 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 400 ; 4.088 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 326 ; 5.419 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 68 A 500 4 REMARK 3 1 B 68 B 500 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 775 ; 0.350 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 775 ; 0.750 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7586 38.1419 19.8189 REMARK 3 T TENSOR REMARK 3 T11: -0.1805 T22: -0.2193 REMARK 3 T33: -0.1519 T12: -0.0200 REMARK 3 T13: -0.0262 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.9833 L22: 6.6573 REMARK 3 L33: 4.6043 L12: -0.7986 REMARK 3 L13: 1.1497 L23: -0.5850 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.0163 S13: 0.2616 REMARK 3 S21: 0.0610 S22: -0.0440 S23: -0.1399 REMARK 3 S31: -0.1958 S32: 0.0459 S33: 0.0078 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0637 30.8908 15.2213 REMARK 3 T TENSOR REMARK 3 T11: -0.1464 T22: -0.1892 REMARK 3 T33: -0.1558 T12: -0.0213 REMARK 3 T13: -0.0193 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 4.2904 L22: 5.9646 REMARK 3 L33: 3.0652 L12: -0.5909 REMARK 3 L13: 1.4834 L23: -1.6280 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.2092 S13: -0.1759 REMARK 3 S21: -0.3546 S22: -0.0276 S23: 0.0554 REMARK 3 S31: 0.3446 S32: -0.0196 S33: 0.0417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. AN 2FE-2S CLUSTER (FES) WAS MODELED INTO EACH SUBUNIT IN THE REMARK 3 ASYMMETRIC UNIT. THE PRESENCE OF THE 2FE-2S CLUSTER WAS REMARK 3 CORROBORATED BY ANOMALOUS DIFFERENCE MAPS. THE PROTEIN LIGANDS REMARK 3 TO THE FE ATOMS IN THE 2FE-2S CLUSTERS ARE CYS 99, CYS 101, CYS REMARK 3 110, AND HIS 114. REMARK 4 REMARK 4 3FNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7418, 1.3624, 1.7372 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 25.90 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : 1.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, RESOLVE 2.13, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0, 100 MM NACL, REMARK 280 15% PEG 3000, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.45200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.05200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.28950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.05200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.45200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.28950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER FORMED FROM THE TWO REMARK 300 CHAINS (A AND B) IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 HIS A 55 REMARK 465 MET A 56 REMARK 465 ARG A 57 REMARK 465 PRO A 58 REMARK 465 PHE A 59 REMARK 465 LEU A 60 REMARK 465 PRO A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 LYS A 64 REMARK 465 GLN A 65 REMARK 465 GLN A 66 REMARK 465 LYS A 67 REMARK 465 VAL A 135 REMARK 465 GLY B 53 REMARK 465 SER B 54 REMARK 465 HIS B 55 REMARK 465 MET B 56 REMARK 465 ARG B 57 REMARK 465 PRO B 58 REMARK 465 PHE B 59 REMARK 465 LEU B 60 REMARK 465 PRO B 61 REMARK 465 LYS B 62 REMARK 465 LYS B 63 REMARK 465 LYS B 64 REMARK 465 GLN B 65 REMARK 465 GLN B 66 REMARK 465 LYS B 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LYS A 74 NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 SER A 92 OG REMARK 470 LYS A 95 CE NZ REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 116 CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 95 CE NZ REMARK 470 LYS B 105 CE NZ REMARK 470 LYS B 116 CD CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS B 131 CE NZ REMARK 470 LYS B 133 CD CE NZ REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 34.60 -140.64 REMARK 500 GLN B 76 60.75 36.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 200 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 99 SG REMARK 620 2 FES A 200 S1 114.9 REMARK 620 3 FES A 200 S2 115.9 105.5 REMARK 620 4 CYS A 101 SG 98.1 108.4 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 200 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 FES A 200 S1 108.3 REMARK 620 3 FES A 200 S2 124.0 106.0 REMARK 620 4 HIS A 114 ND1 97.2 116.1 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 200 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 99 SG REMARK 620 2 FES B 200 S1 114.8 REMARK 620 3 FES B 200 S2 115.4 104.6 REMARK 620 4 CYS B 101 SG 100.0 108.2 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 200 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 110 SG REMARK 620 2 FES B 200 S1 109.9 REMARK 620 3 FES B 200 S2 123.9 104.9 REMARK 620 4 HIS B 114 ND1 96.9 116.4 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QH7 RELATED DB: PDB REMARK 900 MITONEET IS A UNIQUELY FOLDED 2FE-2S OUTER MITOCHONDRIAL MEMBRANE REMARK 900 PROTEIN STABILIZED BY PIOGLITAZONE REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. IN THE TARGET SEQUENCE, CYS 92 IS REPLACED BY REMARK 999 AN SER RESIDUE BY SITE-DIRECTED MUTAGENESIS. REMARK 999 2. THE SOLUBLE DOMAIN OF MINER1 (RESIDUES 57-135) REMARK 999 WAS EXPRESSED WITH A PURIFICATION TAG IN A PET28A(+) REMARK 999 (NOVAGEN) BACTERIAL EXPRESSION VECTOR CONTAINING REMARK 999 AN N-TERMINAL HIS-TAG. THE TAG WAS REMOVED WITH THROMBIN REMARK 999 LEAVING ONLY GSHM FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FNV A 57 135 UNP Q8N5K1 CISD2_HUMAN 57 135 DBREF 3FNV B 57 135 UNP Q8N5K1 CISD2_HUMAN 57 135 SEQADV 3FNV GLY A 53 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV SER A 54 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV HIS A 55 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV MET A 56 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV SER A 92 UNP Q8N5K1 CYS 92 ENGINEERED MUTATION SEQADV 3FNV GLY B 53 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV SER B 54 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV HIS B 55 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV MET B 56 UNP Q8N5K1 EXPRESSION TAG SEQADV 3FNV SER B 92 UNP Q8N5K1 CYS 92 ENGINEERED MUTATION SEQRES 1 A 83 GLY SER HIS MET ARG PRO PHE LEU PRO LYS LYS LYS GLN SEQRES 2 A 83 GLN LYS ASP SER LEU ILE ASN LEU LYS ILE GLN LYS GLU SEQRES 3 A 83 ASN PRO LYS VAL VAL ASN GLU ILE ASN ILE GLU ASP LEU SEQRES 4 A 83 SER LEU THR LYS ALA ALA TYR CYS ARG CYS TRP ARG SER SEQRES 5 A 83 LYS THR PHE PRO ALA CYS ASP GLY SER HIS ASN LYS HIS SEQRES 6 A 83 ASN GLU LEU THR GLY ASP ASN VAL GLY PRO LEU ILE LEU SEQRES 7 A 83 LYS LYS LYS GLU VAL SEQRES 1 B 83 GLY SER HIS MET ARG PRO PHE LEU PRO LYS LYS LYS GLN SEQRES 2 B 83 GLN LYS ASP SER LEU ILE ASN LEU LYS ILE GLN LYS GLU SEQRES 3 B 83 ASN PRO LYS VAL VAL ASN GLU ILE ASN ILE GLU ASP LEU SEQRES 4 B 83 SER LEU THR LYS ALA ALA TYR CYS ARG CYS TRP ARG SER SEQRES 5 B 83 LYS THR PHE PRO ALA CYS ASP GLY SER HIS ASN LYS HIS SEQRES 6 B 83 ASN GLU LEU THR GLY ASP ASN VAL GLY PRO LEU ILE LEU SEQRES 7 B 83 LYS LYS LYS GLU VAL HET FES A 200 4 HET FES B 200 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 3 FES 2(FE2 S2) FORMUL 5 HOH *40(H2 O) HELIX 1 1 GLU A 89 LEU A 91 5 3 HELIX 2 2 GLY A 112 GLY A 122 1 11 HELIX 3 3 GLU B 89 LEU B 91 5 3 HELIX 4 4 GLY B 112 GLY B 122 1 11 SHEET 1 A 3 VAL A 82 ASN A 87 0 SHEET 2 A 3 VAL B 125 LYS B 131 1 O LYS B 131 N ILE A 86 SHEET 3 A 3 LYS B 95 TYR B 98 -1 N TYR B 98 O LEU B 128 SHEET 1 B 3 LYS A 95 TYR A 98 0 SHEET 2 B 3 VAL A 125 LYS A 131 -1 O LEU A 128 N TYR A 98 SHEET 3 B 3 VAL B 82 ASN B 87 1 O ASN B 84 N ILE A 129 LINK SG CYS A 99 FE1 FES A 200 1555 1555 2.40 LINK SG CYS A 101 FE1 FES A 200 1555 1555 2.32 LINK SG CYS A 110 FE2 FES A 200 1555 1555 2.37 LINK ND1 HIS A 114 FE2 FES A 200 1555 1555 2.20 LINK SG CYS B 99 FE1 FES B 200 1555 1555 2.37 LINK SG CYS B 101 FE1 FES B 200 1555 1555 2.32 LINK SG CYS B 110 FE2 FES B 200 1555 1555 2.36 LINK ND1 HIS B 114 FE2 FES B 200 1555 1555 2.19 CISPEP 1 PHE A 107 PRO A 108 0 5.75 CISPEP 2 PHE B 107 PRO B 108 0 6.01 SITE 1 AC1 8 CYS A 99 ARG A 100 CYS A 101 CYS A 110 SITE 2 AC1 8 ASP A 111 GLY A 112 SER A 113 HIS A 114 SITE 1 AC2 7 CYS B 99 ARG B 100 CYS B 101 CYS B 110 SITE 2 AC2 7 ASP B 111 SER B 113 HIS B 114 CRYST1 40.904 48.579 74.104 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013494 0.00000