PDB Short entry for 3FQR HEADER IMMUNE SYSTEM 07-JAN-09 3FQR TITLE PHOSPHORYLATION OF SELF-PEPTIDES ALTERS HUMAN LEUKOCYTE ANTIGEN CLASS TITLE 2 I-RESTRICTED ANTIGEN PRESENTATION AND GENERATES TUMOR SPECIFIC TITLE 3 EPITOPES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS ALPHA1, ALPHA2, ALPHA3, UNP RESIDUES COMPND 5 25-299; COMPND 6 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PHOSPHO-PEPTIDE 30-39 FROM BETA-CATENIN: YLD(SEP)GIHSGA; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IMMUNE SYSTEM, PHOSPHORYLATION, GLYCOPROTEIN, IMMUNE RESPONSE, KEYWDS 2 MEMBRANE, MHC I, PHOSPHOPROTEIN, TRANSMEMBRANE, DISEASE MUTATION, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, PYRROLIDONE CARBOXYLIC ACID, SECRETED, KEYWDS 4 CANCER, TCR, SELF-EPITOPE EXPDTA X-RAY DIFFRACTION AUTHOR J.PETERSEN,J.ROSSJOHN REVDAT 5 01-NOV-23 3FQR 1 REMARK LINK REVDAT 4 01-NOV-17 3FQR 1 REMARK REVDAT 3 13-JUL-11 3FQR 1 VERSN REVDAT 2 10-MAR-09 3FQR 1 JRNL REVDAT 1 03-MAR-09 3FQR 0 JRNL AUTH J.PETERSEN,S.J.WURZBACHER,N.A.WILLIAMSON,S.H.RAMARATHINAM, JRNL AUTH 2 H.H.REID,A.K.NAIR,A.Y.ZHAO,R.NASTOVSKA,G.RUDGE,J.ROSSJOHN, JRNL AUTH 3 A.W.PURCELL JRNL TITL PHOSPHORYLATED SELF-PEPTIDES ALTER HUMAN LEUKOCYTE ANTIGEN JRNL TITL 2 CLASS I-RESTRICTED ANTIGEN PRESENTATION AND GENERATE JRNL TITL 3 TUMOR-SPECIFIC EPITOPES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2776 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196958 JRNL DOI 10.1073/PNAS.0812901106 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 56745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2740 - 4.6040 1.00 3021 156 0.1770 0.1910 REMARK 3 2 4.6040 - 3.6590 1.00 2897 152 0.1340 0.1440 REMARK 3 3 3.6590 - 3.1970 1.00 2830 158 0.1520 0.1820 REMARK 3 4 3.1970 - 2.9060 0.99 2834 157 0.1670 0.1890 REMARK 3 5 2.9060 - 2.6980 0.99 2763 160 0.1680 0.1790 REMARK 3 6 2.6980 - 2.5390 0.99 2784 155 0.1690 0.1970 REMARK 3 7 2.5390 - 2.4120 0.98 2810 120 0.1690 0.2010 REMARK 3 8 2.4120 - 2.3070 0.98 2761 149 0.1660 0.1780 REMARK 3 9 2.3070 - 2.2180 0.98 2707 159 0.1600 0.1860 REMARK 3 10 2.2180 - 2.1420 0.98 2756 126 0.1630 0.1750 REMARK 3 11 2.1420 - 2.0750 0.98 2750 129 0.1550 0.1670 REMARK 3 12 2.0750 - 2.0150 0.97 2724 144 0.1560 0.2000 REMARK 3 13 2.0150 - 1.9620 0.97 2712 149 0.1580 0.1820 REMARK 3 14 1.9620 - 1.9140 0.97 2694 126 0.1550 0.1850 REMARK 3 15 1.9140 - 1.8710 0.96 2689 139 0.1620 0.1890 REMARK 3 16 1.8710 - 1.8310 0.96 2680 150 0.1640 0.2160 REMARK 3 17 1.8310 - 1.7950 0.96 2664 146 0.1630 0.1760 REMARK 3 18 1.7950 - 1.7610 0.94 2594 141 0.1710 0.2000 REMARK 3 19 1.7610 - 1.7290 0.81 2278 119 0.1770 0.1900 REMARK 3 20 1.7290 - 1.7000 0.71 1958 104 0.1920 0.2410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 53.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15500 REMARK 3 B22 (A**2) : 1.65400 REMARK 3 B33 (A**2) : 0.50100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3446 REMARK 3 ANGLE : 0.998 4712 REMARK 3 CHIRALITY : 0.074 478 REMARK 3 PLANARITY : 0.004 619 REMARK 3 DIHEDRAL : 14.826 1292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1-181) OR CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 6.2111 -11.7216 -42.6293 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.0873 REMARK 3 T33: 0.1164 T12: -0.0096 REMARK 3 T13: -0.0188 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.8681 L22: 0.8560 REMARK 3 L33: 0.9572 L12: -0.0761 REMARK 3 L13: -0.1016 L23: 0.2104 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: 0.0521 S13: 0.0409 REMARK 3 S21: -0.0868 S22: -0.0249 S23: 0.0883 REMARK 3 S31: -0.0407 S32: -0.0218 S33: 0.0607 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 182-275) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7917 14.4723 -21.2839 REMARK 3 T TENSOR REMARK 3 T11: 0.0725 T22: 0.0527 REMARK 3 T33: 0.0476 T12: -0.0119 REMARK 3 T13: -0.0078 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.6104 L22: 0.4041 REMARK 3 L33: 0.7608 L12: 0.4092 REMARK 3 L13: 0.2606 L23: 0.2634 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.0834 S13: 0.0138 REMARK 3 S21: -0.0714 S22: 0.0242 S23: 0.0215 REMARK 3 S31: -0.0539 S32: 0.1617 S33: 0.0484 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 7.8022 -4.4335 -15.9544 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.1265 REMARK 3 T33: 0.1295 T12: 0.0096 REMARK 3 T13: 0.0110 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.5429 L22: 0.6109 REMARK 3 L33: 0.7614 L12: 0.3873 REMARK 3 L13: 0.1367 L23: 0.5222 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.1103 S13: -0.0430 REMARK 3 S21: 0.2659 S22: -0.0566 S23: 0.0087 REMARK 3 S31: 0.1831 S32: -0.0466 S33: 0.0619 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.9290 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG3350, 5MM CDCL2, 5MM MGCL2, REMARK 280 0.1M NACL, PH7.4, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.83900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.77900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.85300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.77900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.83900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.85300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 6 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 6 NH2 REMARK 480 LYS B 47 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 133.34 -173.04 REMARK 500 ASP A 29 -128.86 51.08 REMARK 500 TRP B 59 -2.17 76.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 278 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 N REMARK 620 2 HIS A 3 NE2 120.7 REMARK 620 3 HOH A 478 O 135.3 95.6 REMARK 620 4 HOH A 513 O 97.1 96.5 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 279 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 52.6 REMARK 620 3 GLU A 212 OE1 135.3 83.2 REMARK 620 4 GLU A 212 OE2 161.3 138.3 56.5 REMARK 620 5 HOH A 301 O 79.0 93.8 100.7 84.5 REMARK 620 6 HOH A 309 O 91.6 140.3 132.4 81.1 95.1 REMARK 620 7 HOH A 551 O 90.3 86.4 93.1 104.5 166.2 76.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 280 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 O REMARK 620 2 HIS A 191 ND1 81.8 REMARK 620 3 HOH A 401 O 87.2 110.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 281 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 197 NE2 REMARK 620 2 GLU A 198 OE2 84.3 REMARK 620 3 HOH A 407 O 81.1 84.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 50 NE2 REMARK 620 2 HOH B 103 O 98.2 REMARK 620 3 HOH B 133 O 95.8 108.6 REMARK 620 4 HOH B 409 O 85.3 84.6 166.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 11 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP C 4 O REMARK 620 2 HIS C 7 NE2 77.2 REMARK 620 3 HOH C 510 O 76.1 95.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 99 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FQN RELATED DB: PDB REMARK 900 RELATED ID: 3FQT RELATED DB: PDB REMARK 900 RELATED ID: 3FQU RELATED DB: PDB REMARK 900 RELATED ID: 3FQW RELATED DB: PDB REMARK 900 RELATED ID: 3FQX RELATED DB: PDB DBREF 3FQR A 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 3FQR B 1 98 UNP P61769 B2MG_HUMAN 22 119 DBREF 3FQR C 1 10 PDB 3FQR 3FQR 1 10 SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 98 GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS PRO SEQRES 2 B 98 ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR VAL SEQRES 3 B 98 SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU LEU SEQRES 4 B 98 LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER ASP SEQRES 5 B 98 LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU TYR SEQRES 6 B 98 TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR ALA SEQRES 7 B 98 CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS ILE SEQRES 8 B 98 VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 10 TYR LEU ASP SEP GLY ILE HIS SER GLY ALA MODRES 3FQR SEP C 4 SER PHOSPHOSERINE HET SEP C 4 20 HET GOL A 276 6 HET MG A 277 1 HET CD A 278 1 HET CD A 279 1 HET CD A 280 1 HET CD A 281 2 HET GOL B 99 6 HET GOL B 100 6 HET MG B 101 1 HET CD B 102 1 HET CD C 11 2 HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CD CADMIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 CD 6(CD 2+) FORMUL 15 HOH *516(H2 O) HELIX 1 1 ALA A 49 GLN A 54 1 6 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 HIS A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLN A 253 GLN A 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LEU A 126 N HIS A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 ALA A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 ALA A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 GLN A 224 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 5 SER B 10 0 SHEET 2 E 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 E 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 E 4 GLU B 49 HIS B 50 -1 N GLU B 49 O TYR B 66 SHEET 1 F 4 LYS B 5 SER B 10 0 SHEET 2 F 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 F 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 F 4 SER B 54 PHE B 55 -1 N SER B 54 O TYR B 62 SHEET 1 G 4 GLU B 43 ARG B 44 0 SHEET 2 G 4 GLU B 35 LYS B 40 -1 N LYS B 40 O GLU B 43 SHEET 3 G 4 TYR B 77 ASN B 82 -1 O ALA B 78 N LEU B 39 SHEET 4 G 4 LYS B 90 LYS B 93 -1 O LYS B 90 N VAL B 81 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 24 CYS B 79 1555 1555 2.04 LINK C ASP C 3 N ASEP C 4 1555 1555 1.33 LINK C ASP C 3 N BSEP C 4 1555 1555 1.33 LINK C ASEP C 4 N GLY C 5 1555 1555 1.33 LINK C BSEP C 4 N GLY C 5 1555 1555 1.33 LINK N GLY A 1 CD CD A 278 1555 1555 2.52 LINK NE2 HIS A 3 CD CD A 278 1555 1555 2.27 LINK OE1AGLU A 19 MG MG A 277 1555 1555 2.46 LINK OD1 ASP A 30 CD CD A 279 1555 1555 2.47 LINK OD2 ASP A 30 CD CD A 279 1555 1555 2.49 LINK O HIS A 191 CD CD A 280 1555 1555 2.43 LINK ND1 HIS A 191 CD CD A 280 1555 1555 2.27 LINK NE2 HIS A 197 CD B CD A 281 1555 1555 2.60 LINK NE2 HIS A 197 CD A CD A 281 1555 1555 2.21 LINK OE2 GLU A 198 CD B CD A 281 1555 1555 2.59 LINK OE1AGLU A 212 CD CD A 279 1555 1555 2.27 LINK OE2AGLU A 212 CD CD A 279 1555 1555 2.38 LINK CD CD A 278 O HOH A 478 1555 1555 2.46 LINK CD CD A 278 O HOH A 513 1555 1555 2.41 LINK CD CD A 279 O HOH A 301 1555 1555 2.43 LINK CD CD A 279 O HOH A 309 1555 1555 2.40 LINK CD CD A 279 O HOH A 551 1555 1555 2.56 LINK CD CD A 280 O HOH A 401 1555 1555 2.40 LINK CD B CD A 281 O HOH A 407 1555 1555 2.42 LINK NE2 HIS B 50 CD CD B 102 1555 1555 2.29 LINK O LEU B 86 MG MG B 101 1555 1555 2.46 LINK CD CD B 102 O HOH B 103 1555 1555 2.54 LINK CD CD B 102 O HOH B 133 1555 1555 2.55 LINK CD CD B 102 O HOH B 409 1555 1555 2.50 LINK O ASEP C 4 CD A CD C 11 1555 1555 2.13 LINK O BSEP C 4 CD B CD C 11 1555 1555 2.43 LINK NE2 HIS C 7 CD B CD C 11 1555 1555 2.45 LINK CD B CD C 11 O HOH C 510 1555 1555 2.41 CISPEP 1 TYR A 209 PRO A 210 0 3.51 CISPEP 2 HIS B 30 PRO B 31 0 2.24 SITE 1 AC1 9 ARG A 6 PHE A 8 ASP A 29 ASP A 30 SITE 2 AC1 9 HOH A 336 HOH A 507 HOH A 516 TYR B 62 SITE 3 AC1 9 HOH B 273 SITE 1 AC2 4 GLU A 19 HOH A 607 HIS B 12 PRO B 13 SITE 1 AC3 4 GLY A 1 HIS A 3 HOH A 478 HOH A 513 SITE 1 AC4 5 ASP A 30 GLU A 212 HOH A 301 HOH A 309 SITE 2 AC4 5 HOH A 551 SITE 1 AC5 4 HIS A 151 GLU A 154 HIS A 191 HOH A 401 SITE 1 AC6 4 HIS A 145 HIS A 197 GLU A 198 HOH A 407 SITE 1 AC7 5 SER B 32 ASP B 33 HOH B 113 HOH B 154 SITE 2 AC7 5 HOH B 338 SITE 1 AC8 8 VAL A 231 ARG A 234 TRP A 244 GLN B 7 SITE 2 AC8 8 VAL B 8 MET B 98 HOH B 111 HOH B 112 SITE 1 AC9 5 ASN B 82 HIS B 83 LEU B 86 HOH B 232 SITE 2 AC9 5 HOH B 380 SITE 1 BC1 5 HIS B 50 HOH B 103 HOH B 133 HOH B 261 SITE 2 BC1 5 HOH B 409 SITE 1 BC2 4 ASP A 196 SEP C 4 HIS C 7 HOH C 510 CRYST1 59.678 79.706 111.558 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008964 0.00000