PDB Short entry for 3FUT HEADER TRANSFERASE 14-JAN-09 3FUT TITLE APO-FORM OF T. THERMOPHILUS 16S RRNA A1518 AND A1519 METHYLTRANSFERASE TITLE 2 (KSGA) IN SPACE GROUP P21212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLADENOSINE TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-ADENOSYLMETHIONINE-6-N', N'-ADENOSYL(RRNA) COMPND 5 DIMETHYLTRANSFERASE, 16S RRNA DIMETHYLASE, HIGH LEVEL KASUGAMYCIN COMPND 6 RESISTANCE PROTEIN KSGA, KASUGAMYCIN DIMETHYLTRANSFERASE; COMPND 7 EC: 2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: KSGA, TTHA0083; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS METHYLTRANSFERASE, DIMETHYLTRANSFERASE, DUAL-SPECIFIC KEYWDS 2 METHYLTRANSFERASE, 16S RRNA METHYLTRANSFERASE, TRANSLATION, KEYWDS 3 ANTIBIOTIC RESISTANCE, RNA-BINDING, RRNA PROCESSING, S-ADENOSYL-L- KEYWDS 4 METHIONINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,R.BELARDINELLI,E.SERI,S.T.GREGORY,C.GUALERZI,A.E.DAHLBERG, AUTHOR 2 G.JOGL REVDAT 4 01-NOV-17 3FUT 1 REMARK REVDAT 3 13-JUL-11 3FUT 1 VERSN REVDAT 2 28-APR-09 3FUT 1 JRNL REVDAT 1 31-MAR-09 3FUT 0 JRNL AUTH H.DEMIRCI,R.BELARDINELLI,E.SERI,S.T.GREGORY,C.GUALERZI, JRNL AUTH 2 A.E.DAHLBERG,G.JOGL JRNL TITL STRUCTURAL REARRANGEMENTS IN THE ACTIVE SITE OF THE THERMUS JRNL TITL 2 THERMOPHILUS 16S RRNA METHYLTRANSFERASE KSGA IN A BINARY JRNL TITL 3 COMPLEX WITH 5'-METHYLTHIOADENOSINE. JRNL REF J.MOL.BIOL. V. 388 271 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19285505 JRNL DOI 10.1016/J.JMB.2009.02.066 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 77536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 255 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 768 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4290 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5842 ; 1.334 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;26.764 ;21.311 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 714 ;13.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;14.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3280 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2107 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2968 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 582 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 96 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 73 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2755 ; 0.774 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4332 ; 1.120 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 1.901 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1510 ; 2.960 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 96.6239 36.5601 42.4882 REMARK 3 T TENSOR REMARK 3 T11: -0.0469 T22: -0.0031 REMARK 3 T33: 0.0107 T12: 0.0102 REMARK 3 T13: 0.0054 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.3938 L22: 1.6473 REMARK 3 L33: 1.7438 L12: -0.0672 REMARK 3 L13: -0.5058 L23: 0.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: 0.0889 S13: -0.0548 REMARK 3 S21: -0.1258 S22: 0.0795 S23: -0.2817 REMARK 3 S31: 0.0169 S32: 0.2958 S33: -0.0359 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 83.0407 38.3903 41.4779 REMARK 3 T TENSOR REMARK 3 T11: -0.0316 T22: -0.0702 REMARK 3 T33: -0.0481 T12: 0.0094 REMARK 3 T13: -0.0102 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.5354 L22: 0.8793 REMARK 3 L33: 1.1077 L12: -0.1662 REMARK 3 L13: 0.0014 L23: 0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.1708 S13: -0.0091 REMARK 3 S21: -0.1025 S22: 0.0115 S23: -0.0351 REMARK 3 S31: 0.0478 S32: 0.0696 S33: -0.0501 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5069 38.0216 34.2885 REMARK 3 T TENSOR REMARK 3 T11: -0.0118 T22: -0.0640 REMARK 3 T33: 0.0080 T12: 0.0022 REMARK 3 T13: -0.0753 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.1401 L22: 2.4993 REMARK 3 L33: 1.9332 L12: 1.9561 REMARK 3 L13: 1.1299 L23: 0.6483 REMARK 3 S TENSOR REMARK 3 S11: -0.2451 S12: 0.1874 S13: 0.3685 REMARK 3 S21: -0.3732 S22: 0.1117 S23: 0.4019 REMARK 3 S31: -0.1055 S32: -0.0905 S33: 0.1334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 80 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9826 41.5453 67.7644 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: 0.0114 REMARK 3 T33: 0.0005 T12: 0.0031 REMARK 3 T13: 0.0266 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.4735 L22: 0.9945 REMARK 3 L33: 2.4539 L12: 0.3160 REMARK 3 L13: -1.0520 L23: 1.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: -0.0145 S13: -0.1593 REMARK 3 S21: 0.1162 S22: -0.1053 S23: 0.1475 REMARK 3 S31: 0.1867 S32: -0.4344 S33: 0.2024 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 55.9212 40.7942 69.4493 REMARK 3 T TENSOR REMARK 3 T11: -0.0156 T22: -0.0373 REMARK 3 T33: -0.0498 T12: 0.0176 REMARK 3 T13: 0.0152 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 2.3486 L22: 0.4329 REMARK 3 L33: 1.7867 L12: 0.1467 REMARK 3 L13: -0.3848 L23: 0.5416 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.3672 S13: -0.2468 REMARK 3 S21: 0.1036 S22: 0.0143 S23: 0.0306 REMARK 3 S31: 0.2417 S32: -0.0171 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 82.7359 37.7174 77.0837 REMARK 3 T TENSOR REMARK 3 T11: -0.0030 T22: 0.2233 REMARK 3 T33: -0.0601 T12: 0.1891 REMARK 3 T13: -0.0492 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 4.7927 L22: 2.4589 REMARK 3 L33: 3.4651 L12: -1.9018 REMARK 3 L13: 0.6584 L23: 0.3877 REMARK 3 S TENSOR REMARK 3 S11: -0.3556 S12: -0.9830 S13: -0.0896 REMARK 3 S21: 0.3558 S22: 0.4730 S23: -0.3471 REMARK 3 S31: 0.3578 S32: 0.3908 S33: -0.1174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : BENT SINGLE SI (111) CRYSTAL REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING AND DEFLECTION) WITH REMARK 200 VERTICAL FOCUSING MIRROR REMARK 200 OPTICS : BENT SINGLE SI (111) CRYSTAL REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING AND DEFLECTION) WITH REMARK 200 VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM DI-AMMONIUM HYDROGEN PHOSPHATE REMARK 280 AND 20% W/V POLYETHYLENE GLYCOLE 3350, MICROBATCH TECHNIQUE REMARK 280 UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 68.52300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.52300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 VAL A 271 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 ALA B 21 REMARK 465 ASP B 22 REMARK 465 LYS B 23 REMARK 465 ARG B 24 REMARK 465 TYR B 120 REMARK 465 HIS B 121 REMARK 465 GLY B 269 REMARK 465 ALA B 270 REMARK 465 VAL B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 106 O HOH A 427 1.66 REMARK 500 OE1 GLU B 106 O HOH B 544 2.02 REMARK 500 NH1 ARG A 264 O HOH A 349 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 6 O HOH A 387 4566 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 249 CZ ARG B 249 NH1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 119 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO B 119 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG B 249 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 -161.69 -129.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FUU RELATED DB: PDB REMARK 900 T. THERMOPHILUS 16S RRNA A1518 AND A1519 METHYLTRANSFERASE (KSGA) REMARK 900 IN COMPLEX WITH ADENOSINE IN SPACE GROUP P212121 REMARK 900 RELATED ID: 3FUV RELATED DB: PDB REMARK 900 APO-FORM OF T. THERMOPHILUS 16S RRNA A1518 AND A1519 REMARK 900 METHYLTRANSFERASE (KSGA) IN SPACE GROUP P43212 REMARK 900 RELATED ID: 3FUW RELATED DB: PDB REMARK 900 T. THERMOPHILUS 16S RRNA A1518 AND A1519 METHYLTRANSFERASE (KSGA) REMARK 900 IN COMPLEX WITH 5'-METHYLTHIOADENOSINE IN SPACE GROUP P212121 REMARK 900 RELATED ID: 3FUX RELATED DB: PDB REMARK 900 T. THERMOPHILUS 16S RRNA A1518 AND A1519 METHYLTRANSFERASE (KSGA) REMARK 900 IN COMPLEX WITH 5'-METHYLTHIOADENOSINE IN SPACE GROUP P212121 DBREF 3FUT A 1 271 UNP Q5SM60 KSGA_THET8 1 271 DBREF 3FUT B 1 271 UNP Q5SM60 KSGA_THET8 1 271 SEQRES 1 A 271 MSE SER LYS LEU ALA SER PRO GLN SER VAL ARG ALA LEU SEQRES 2 A 271 LEU GLU ARG HIS GLY LEU PHE ALA ASP LYS ARG PHE GLY SEQRES 3 A 271 GLN ASN PHE LEU VAL SER GLU ALA HIS LEU ARG ARG ILE SEQRES 4 A 271 VAL GLU ALA ALA ARG PRO PHE THR GLY PRO VAL PHE GLU SEQRES 5 A 271 VAL GLY PRO GLY LEU GLY ALA LEU THR ARG ALA LEU LEU SEQRES 6 A 271 GLU ALA GLY ALA GLU VAL THR ALA ILE GLU LYS ASP LEU SEQRES 7 A 271 ARG LEU ARG PRO VAL LEU GLU GLU THR LEU SER GLY LEU SEQRES 8 A 271 PRO VAL ARG LEU VAL PHE GLN ASP ALA LEU LEU TYR PRO SEQRES 9 A 271 TRP GLU GLU VAL PRO GLN GLY SER LEU LEU VAL ALA ASN SEQRES 10 A 271 LEU PRO TYR HIS ILE ALA THR PRO LEU VAL THR ARG LEU SEQRES 11 A 271 LEU LYS THR GLY ARG PHE ALA ARG LEU VAL PHE LEU VAL SEQRES 12 A 271 GLN LYS GLU VAL ALA GLU ARG MSE THR ALA ARG PRO LYS SEQRES 13 A 271 THR PRO ALA TYR GLY VAL LEU THR LEU ARG VAL ALA HIS SEQRES 14 A 271 HIS ALA VAL ALA GLU ARG LEU PHE ASP LEU PRO PRO GLY SEQRES 15 A 271 ALA PHE PHE PRO PRO PRO LYS VAL TRP SER SER LEU VAL SEQRES 16 A 271 ARG LEU THR PRO THR GLY ALA LEU ASP ASP PRO GLY LEU SEQRES 17 A 271 PHE ARG LEU VAL GLU ALA ALA PHE GLY LYS ARG ARG LYS SEQRES 18 A 271 THR LEU LEU ASN ALA LEU ALA ALA ALA GLY TYR PRO LYS SEQRES 19 A 271 ALA ARG VAL GLU GLU ALA LEU ARG ALA LEU GLY LEU PRO SEQRES 20 A 271 PRO ARG VAL ARG ALA GLU GLU LEU ASP LEU GLU ALA PHE SEQRES 21 A 271 ARG ARG LEU ARG GLU GLY LEU GLU GLY ALA VAL SEQRES 1 B 271 MSE SER LYS LEU ALA SER PRO GLN SER VAL ARG ALA LEU SEQRES 2 B 271 LEU GLU ARG HIS GLY LEU PHE ALA ASP LYS ARG PHE GLY SEQRES 3 B 271 GLN ASN PHE LEU VAL SER GLU ALA HIS LEU ARG ARG ILE SEQRES 4 B 271 VAL GLU ALA ALA ARG PRO PHE THR GLY PRO VAL PHE GLU SEQRES 5 B 271 VAL GLY PRO GLY LEU GLY ALA LEU THR ARG ALA LEU LEU SEQRES 6 B 271 GLU ALA GLY ALA GLU VAL THR ALA ILE GLU LYS ASP LEU SEQRES 7 B 271 ARG LEU ARG PRO VAL LEU GLU GLU THR LEU SER GLY LEU SEQRES 8 B 271 PRO VAL ARG LEU VAL PHE GLN ASP ALA LEU LEU TYR PRO SEQRES 9 B 271 TRP GLU GLU VAL PRO GLN GLY SER LEU LEU VAL ALA ASN SEQRES 10 B 271 LEU PRO TYR HIS ILE ALA THR PRO LEU VAL THR ARG LEU SEQRES 11 B 271 LEU LYS THR GLY ARG PHE ALA ARG LEU VAL PHE LEU VAL SEQRES 12 B 271 GLN LYS GLU VAL ALA GLU ARG MSE THR ALA ARG PRO LYS SEQRES 13 B 271 THR PRO ALA TYR GLY VAL LEU THR LEU ARG VAL ALA HIS SEQRES 14 B 271 HIS ALA VAL ALA GLU ARG LEU PHE ASP LEU PRO PRO GLY SEQRES 15 B 271 ALA PHE PHE PRO PRO PRO LYS VAL TRP SER SER LEU VAL SEQRES 16 B 271 ARG LEU THR PRO THR GLY ALA LEU ASP ASP PRO GLY LEU SEQRES 17 B 271 PHE ARG LEU VAL GLU ALA ALA PHE GLY LYS ARG ARG LYS SEQRES 18 B 271 THR LEU LEU ASN ALA LEU ALA ALA ALA GLY TYR PRO LYS SEQRES 19 B 271 ALA ARG VAL GLU GLU ALA LEU ARG ALA LEU GLY LEU PRO SEQRES 20 B 271 PRO ARG VAL ARG ALA GLU GLU LEU ASP LEU GLU ALA PHE SEQRES 21 B 271 ARG ARG LEU ARG GLU GLY LEU GLU GLY ALA VAL MODRES 3FUT MSE A 151 MET SELENOMETHIONINE MODRES 3FUT MSE B 151 MET SELENOMETHIONINE HET MSE A 151 8 HET MSE B 151 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *768(H2 O) HELIX 1 1 SER A 6 HIS A 17 1 12 HELIX 2 2 SER A 32 ARG A 44 1 13 HELIX 3 3 GLY A 58 ALA A 67 1 10 HELIX 4 4 ASP A 77 ARG A 79 5 3 HELIX 5 5 LEU A 80 LEU A 88 1 9 HELIX 6 6 ASP A 99 TYR A 103 5 5 HELIX 7 7 PRO A 104 VAL A 108 5 5 HELIX 8 8 ALA A 123 GLY A 134 1 12 HELIX 9 9 LYS A 145 THR A 152 1 8 HELIX 10 10 GLY A 161 HIS A 170 1 10 HELIX 11 11 PRO A 180 GLY A 182 5 3 HELIX 12 12 ASP A 205 PHE A 216 1 12 HELIX 13 13 THR A 222 ALA A 230 1 9 HELIX 14 14 PRO A 233 LEU A 244 1 12 HELIX 15 15 ARG A 251 LEU A 255 5 5 HELIX 16 16 ASP A 256 GLU A 268 1 13 HELIX 17 17 SER B 6 HIS B 17 1 12 HELIX 18 18 SER B 32 ARG B 44 1 13 HELIX 19 19 GLY B 58 ALA B 67 1 10 HELIX 20 20 ASP B 77 ARG B 79 5 3 HELIX 21 21 LEU B 80 LEU B 88 1 9 HELIX 22 22 ASP B 99 TYR B 103 5 5 HELIX 23 23 PRO B 104 VAL B 108 5 5 HELIX 24 24 ILE B 122 GLY B 134 1 13 HELIX 25 25 LYS B 145 THR B 152 1 8 HELIX 26 26 GLY B 161 HIS B 170 1 10 HELIX 27 27 PRO B 180 GLY B 182 5 3 HELIX 28 28 ASP B 205 GLY B 217 1 13 HELIX 29 29 THR B 222 ALA B 229 1 8 HELIX 30 30 PRO B 233 GLY B 245 1 13 HELIX 31 31 ARG B 251 LEU B 255 5 5 HELIX 32 32 ASP B 256 GLU B 268 1 13 SHEET 1 A 2 PHE A 29 LEU A 30 0 SHEET 2 A 2 PHE A 184 PHE A 185 -1 O PHE A 185 N PHE A 29 SHEET 1 B 7 ARG A 94 PHE A 97 0 SHEET 2 B 7 VAL A 71 GLU A 75 1 N ALA A 73 O VAL A 96 SHEET 3 B 7 VAL A 50 VAL A 53 1 N GLU A 52 O ILE A 74 SHEET 4 B 7 SER A 112 LEU A 118 1 O ASN A 117 N VAL A 53 SHEET 5 B 7 PHE A 136 GLN A 144 1 O LEU A 142 N ALA A 116 SHEET 6 B 7 SER A 192 PRO A 199 -1 O LEU A 197 N LEU A 139 SHEET 7 B 7 ALA A 171 LEU A 179 -1 N LEU A 176 O LEU A 194 SHEET 1 C 2 PHE B 29 LEU B 30 0 SHEET 2 C 2 PHE B 184 PHE B 185 -1 O PHE B 185 N PHE B 29 SHEET 1 D 7 VAL B 93 PHE B 97 0 SHEET 2 D 7 VAL B 71 GLU B 75 1 N ALA B 73 O VAL B 96 SHEET 3 D 7 VAL B 50 VAL B 53 1 N GLU B 52 O THR B 72 SHEET 4 D 7 SER B 112 LEU B 118 1 O VAL B 115 N PHE B 51 SHEET 5 D 7 PHE B 136 GLN B 144 1 O VAL B 140 N LEU B 114 SHEET 6 D 7 SER B 192 PRO B 199 -1 O LEU B 197 N LEU B 139 SHEET 7 D 7 ALA B 171 LEU B 179 -1 N PHE B 177 O LEU B 194 LINK C ARG A 150 N MSE A 151 1555 1555 1.32 LINK C MSE A 151 N THR A 152 1555 1555 1.33 LINK C ARG B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N THR B 152 1555 1555 1.33 CISPEP 1 ARG A 44 PRO A 45 0 -2.57 CISPEP 2 PHE A 185 PRO A 186 0 -9.27 CISPEP 3 ARG B 44 PRO B 45 0 -3.26 CISPEP 4 PHE B 185 PRO B 186 0 -6.19 CRYST1 137.046 53.692 69.354 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007297 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014419 0.00000