PDB Short entry for 3FVU HEADER LYASE, TRANSFERASE 16-JAN-09 3FVU TITLE CRYSTAL STRUCTURE OF HUMAN KYNURENINE AMINOTRANSFERASE I IN COMPLEX TITLE 2 WITH INDOLE-3-ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KYNURENINE--OXOGLUTARATE TRANSAMINASE I, KYNURENINE COMPND 5 AMINOTRANSFERASE I, KATI, GLUTAMINE--PHENYLPYRUVATE TRANSAMINASE, COMPND 6 GLUTAMINE TRANSAMINASE K, GTK, CYSTEINE-S-CONJUGATE BETA-LYASE; COMPND 7 EC: 2.6.1.7, 2.6.1.64, 4.4.1.13; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCBL1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBLUEBAC4.5 KEYWDS ALPHA BETA PROTEIN, PLP DEPENDENT PROTEIN, AMINOTRANSFERASE, LYASE, KEYWDS 2 PYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HAN,H.ROBINSON,T.CAI,D.A.TAGLE,J.LI REVDAT 4 22-NOV-23 3FVU 1 REMARK REVDAT 3 06-SEP-23 3FVU 1 REMARK LINK REVDAT 2 13-JUL-11 3FVU 1 VERSN REVDAT 1 19-MAY-09 3FVU 0 JRNL AUTH Q.HAN,H.ROBINSON,T.CAI,D.A.TAGLE,J.LI JRNL TITL STRUCTURAL INSIGHT INTO THE INHIBITION OF HUMAN KYNURENINE JRNL TITL 2 AMINOTRANSFERASE I/GLUTAMINE TRANSAMINASE K JRNL REF J.MED.CHEM. V. 52 2786 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19338303 JRNL DOI 10.1021/JM9000874 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 115737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6120 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 435 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6738 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6987 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9481 ; 1.330 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 8.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;36.737 ;23.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1138 ;12.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1000 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5372 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3492 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4839 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 552 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.149 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4194 ; 0.697 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6804 ; 1.259 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2793 ; 1.967 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2677 ; 3.097 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1W7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 400, SODIUM ACETATE 0.2 M, REMARK 280 TRIS 0.1 M, 4% GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.18200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.18200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -168.62 -109.04 REMARK 500 ARG A 238 23.18 -140.06 REMARK 500 SER A 276 -50.72 -136.08 REMARK 500 PHE A 278 -60.83 68.86 REMARK 500 SER A 337 -178.14 83.03 REMARK 500 THR B 64 -169.68 -107.25 REMARK 500 SER B 276 -55.74 -131.65 REMARK 500 PHE B 278 -57.52 72.71 REMARK 500 ARG B 300 -5.34 74.97 REMARK 500 SER B 337 176.73 77.27 REMARK 500 ASP B 353 34.53 -97.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 427 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 206 O REMARK 620 2 HOH A 431 O 168.5 REMARK 620 3 HOH A 438 O 90.8 99.5 REMARK 620 4 HOH A 537 O 85.9 89.1 88.9 REMARK 620 5 HOH A 641 O 83.9 100.7 92.5 169.7 REMARK 620 6 HOH A 702 O 77.8 91.9 168.6 90.9 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 426 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 206 O REMARK 620 2 HOH B 447 O 75.2 REMARK 620 3 HOH B 529 O 172.0 99.4 REMARK 620 4 HOH B 530 O 85.8 82.2 87.6 REMARK 620 5 HOH B 658 O 86.4 95.0 100.1 172.2 REMARK 620 6 HOH B 703 O 94.5 169.7 90.9 97.5 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IAC A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IAC B 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 425 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 426 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FVS RELATED DB: PDB REMARK 900 HUMAN KYNURENINE AMINOTRANSFERASE I IN COMPLEX WITH GLYCEROL DBREF 3FVU A 1 422 UNP Q16773 KAT1_HUMAN 1 422 DBREF 3FVU B 1 422 UNP Q16773 KAT1_HUMAN 1 422 SEQRES 1 A 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 A 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 A 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 A 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 A 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 A 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 A 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 A 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 A 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 A 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 A 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 A 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 A 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 A 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 A 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 A 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 A 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 A 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 A 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LLP SEQRES 20 A 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 A 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 A 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 A 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 A 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 A 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 A 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 A 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 A 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 A 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 A 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 A 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 A 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 A 422 LYS TRP LYS VAL GLU LEU SEQRES 1 B 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 B 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 B 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 B 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 B 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 B 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 B 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 B 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 B 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 B 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 B 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 B 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 B 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 B 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 B 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 B 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 B 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 B 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 B 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LLP SEQRES 20 B 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 B 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 B 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 B 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 B 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 B 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 B 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 B 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 B 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 B 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 B 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 B 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 B 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 B 422 LYS TRP LYS VAL GLU LEU MODRES 3FVU LLP A 247 LYS MODRES 3FVU LLP B 247 LYS HET LLP A 247 24 HET LLP B 247 24 HET IAC A 423 13 HET GOL A 424 6 HET GOL A 425 6 HET GOL A 426 6 HET NA A 427 1 HET IAC B 423 13 HET GOL B 424 6 HET GOL B 425 6 HET NA B 426 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM IAC 1H-INDOL-3-YLACETIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN IAC INDOLE ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 IAC 2(C10 H9 N O2) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 7 NA 2(NA 1+) FORMUL 12 HOH *590(H2 O) HELIX 1 1 ALA A 7 ASP A 11 5 5 HELIX 2 2 TRP A 18 GLU A 27 1 10 HELIX 3 3 PRO A 43 VAL A 54 1 12 HELIX 4 4 ASP A 57 GLN A 62 5 6 HELIX 5 5 TYR A 69 GLY A 85 1 17 HELIX 6 6 ASP A 89 ASN A 93 1 5 HELIX 7 7 VAL A 98 VAL A 112 1 15 HELIX 8 8 CYS A 127 ALA A 135 1 9 HELIX 9 9 SER A 156 SER A 158 5 3 HELIX 10 10 ASP A 163 PHE A 171 1 9 HELIX 11 11 SER A 192 ASP A 207 1 16 HELIX 12 12 SER A 228 LEU A 232 5 5 HELIX 13 13 MET A 235 GLU A 237 5 3 HELIX 14 14 ALA A 245 SER A 250 1 6 HELIX 15 15 ALA A 251 LYS A 255 5 5 HELIX 16 16 PRO A 262 ASN A 275 1 14 HELIX 17 17 PRO A 281 LEU A 298 1 18 HELIX 18 18 SER A 304 SER A 326 1 23 HELIX 19 19 ILE A 344 MET A 351 1 8 HELIX 20 20 PRO A 361 GLY A 375 1 15 HELIX 21 21 SER A 382 TYR A 385 5 4 HELIX 22 22 SER A 386 GLN A 390 5 5 HELIX 23 23 ASP A 404 GLU A 421 1 18 HELIX 24 24 ALA B 7 ASP B 11 5 5 HELIX 25 25 ASN B 16 SER B 26 1 11 HELIX 26 26 PRO B 43 VAL B 54 1 12 HELIX 27 27 ASP B 57 GLN B 62 5 6 HELIX 28 28 TYR B 69 GLY B 85 1 17 HELIX 29 29 ASP B 89 ASN B 93 1 5 HELIX 30 30 VAL B 98 VAL B 112 1 15 HELIX 31 31 CYS B 127 ALA B 135 1 9 HELIX 32 32 SER B 156 TRP B 160 5 5 HELIX 33 33 ASP B 163 PHE B 171 1 9 HELIX 34 34 SER B 192 ASP B 207 1 16 HELIX 35 35 SER B 228 LEU B 232 5 5 HELIX 36 36 MET B 235 GLU B 237 5 3 HELIX 37 37 ALA B 245 SER B 250 1 6 HELIX 38 38 ALA B 251 LYS B 255 5 5 HELIX 39 39 PRO B 262 ASN B 275 1 14 HELIX 40 40 PRO B 281 LEU B 298 1 18 HELIX 41 41 SER B 304 SER B 326 1 23 HELIX 42 42 ILE B 344 MET B 351 1 8 HELIX 43 43 PRO B 361 GLY B 375 1 15 HELIX 44 44 SER B 382 TYR B 385 5 4 HELIX 45 45 SER B 386 LYS B 391 1 6 HELIX 46 46 ASP B 404 GLU B 421 1 18 SHEET 1 A 2 VAL A 31 ASN A 32 0 SHEET 2 A 2 LEU A 376 VAL A 377 1 O VAL A 377 N VAL A 31 SHEET 1 B 7 VAL A 94 THR A 97 0 SHEET 2 B 7 GLY A 257 LEU A 260 -1 O GLY A 257 N THR A 97 SHEET 3 B 7 THR A 239 SER A 244 -1 N THR A 241 O LEU A 260 SHEET 4 B 7 VAL A 209 ASP A 213 1 N THR A 212 O LEU A 240 SHEET 5 B 7 THR A 175 ASN A 181 1 N LEU A 180 O ASP A 213 SHEET 6 B 7 GLU A 117 GLU A 122 1 N ILE A 119 O VAL A 179 SHEET 7 B 7 ARG A 138 SER A 143 1 O VAL A 140 N ILE A 120 SHEET 1 C 2 LYS A 145 PRO A 146 0 SHEET 2 C 2 TRP A 160 GLN A 161 -1 O GLN A 161 N LYS A 145 SHEET 1 D 4 LYS A 330 ILE A 332 0 SHEET 2 D 4 PHE A 339 ASP A 343 -1 O ASP A 343 N LYS A 330 SHEET 3 D 4 TYR A 396 CYS A 400 -1 O PHE A 399 N LEU A 340 SHEET 4 D 4 ILE A 379 PRO A 380 -1 N ILE A 379 O ARG A 398 SHEET 1 E 2 VAL B 31 ASN B 32 0 SHEET 2 E 2 LEU B 376 VAL B 377 1 O VAL B 377 N VAL B 31 SHEET 1 F 7 VAL B 94 THR B 97 0 SHEET 2 F 7 GLY B 257 LEU B 260 -1 O GLY B 257 N THR B 97 SHEET 3 F 7 THR B 239 SER B 244 -1 N THR B 241 O LEU B 260 SHEET 4 F 7 VAL B 209 ASP B 213 1 N THR B 212 O LEU B 240 SHEET 5 F 7 THR B 175 ASN B 181 1 N LEU B 180 O ASP B 213 SHEET 6 F 7 GLU B 117 GLU B 122 1 N GLU B 117 O LYS B 176 SHEET 7 F 7 ARG B 138 SER B 143 1 O VAL B 142 N GLU B 122 SHEET 1 G 4 LYS B 330 ILE B 332 0 SHEET 2 G 4 PHE B 339 ASP B 343 -1 O ASP B 343 N LYS B 330 SHEET 3 G 4 TYR B 396 CYS B 400 -1 O PHE B 399 N LEU B 340 SHEET 4 G 4 ILE B 379 PRO B 380 -1 N ILE B 379 O ARG B 398 LINK C GLY A 246 N LLP A 247 1555 1555 1.33 LINK C LLP A 247 N THR A 248 1555 1555 1.34 LINK C GLY B 246 N LLP B 247 1555 1555 1.33 LINK C LLP B 247 N THR B 248 1555 1555 1.33 LINK O HIS A 206 NA NA A 427 1555 1555 2.41 LINK NA NA A 427 O HOH A 431 1555 1555 2.39 LINK NA NA A 427 O HOH A 438 1555 1555 2.69 LINK NA NA A 427 O HOH A 537 1555 1555 2.37 LINK NA NA A 427 O HOH A 641 1555 1555 2.19 LINK NA NA A 427 O HOH A 702 1555 1555 2.60 LINK O HIS B 206 NA NA B 426 1555 1555 2.44 LINK NA NA B 426 O HOH B 447 1555 1555 2.52 LINK NA NA B 426 O HOH B 529 1555 1555 2.20 LINK NA NA B 426 O HOH B 530 1555 1555 2.47 LINK NA NA B 426 O HOH B 658 1555 1555 2.29 LINK NA NA B 426 O HOH B 703 1555 1555 2.71 CISPEP 1 GLU A 122 PRO A 123 0 1.39 CISPEP 2 THR A 182 PRO A 183 0 -7.05 CISPEP 3 ASN A 185 PRO A 186 0 14.38 CISPEP 4 GLU B 122 PRO B 123 0 0.90 CISPEP 5 THR B 182 PRO B 183 0 -7.27 CISPEP 6 ASN B 185 PRO B 186 0 14.20 SITE 1 AC1 10 TRP A 18 GLY A 36 TYR A 101 ASN A 185 SITE 2 AC1 10 LLP A 247 ARG A 398 GOL A 425 TYR B 63 SITE 3 AC1 10 PHE B 278 HIS B 279 SITE 1 AC2 7 ALA A 77 SER A 78 GLU A 87 ILE A 88 SITE 2 AC2 7 HOH A 588 HOH A 625 LYS B 23 SITE 1 AC3 6 GLN A 35 GLY A 36 IAC A 423 HOH A 686 SITE 2 AC3 6 HIS B 279 HOH B 654 SITE 1 AC4 4 PRO A 43 ASP A 44 PHE A 45 HOH A 699 SITE 1 AC5 6 HIS A 206 HOH A 431 HOH A 438 HOH A 537 SITE 2 AC5 6 HOH A 641 HOH A 702 SITE 1 AC6 11 TYR A 63 PHE A 278 HIS A 279 TRP B 18 SITE 2 AC6 11 GLY B 36 TYR B 101 PHE B 125 ASN B 185 SITE 3 AC6 11 PHE B 339 ARG B 398 GOL B 424 SITE 1 AC7 7 HIS A 279 VAL B 22 GLY B 36 IAC B 423 SITE 2 AC7 7 HOH B 526 HOH B 628 HOH B 700 SITE 1 AC8 7 MET B 59 LEU B 60 GLN B 62 TYR B 63 SITE 2 AC8 7 THR B 64 TYR B 69 HOH B 662 SITE 1 AC9 6 HIS B 206 HOH B 447 HOH B 529 HOH B 530 SITE 2 AC9 6 HOH B 658 HOH B 703 CRYST1 106.364 108.454 81.867 90.00 114.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009402 0.000000 0.004225 0.00000 SCALE2 0.000000 0.009220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013392 0.00000